BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494944
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48810.1 | Symbols: ATB5-B, B5 #3, ATCB5-D, CB5-D | cytochro... 1038 0.0
> AT5G48810.1 | Symbols: ATB5-B, B5 #3, ATCB5-D, CB5-D | cytochrome
B5 isoform D | chr5:19789067-19790334 REVERSE LENGTH=759
Length=759
Score = 1038 bits (562), Expect = 0.0
Identities = 661/708 (93%), Gaps = 10/708 (1%)
Strand=Plus/Plus
Query 1 AAGTAGACCAAAAAAGCGGTTGGTGAAAGATCCCAAA-T--CAGATTCCCAATTAATAAT 57
||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||| |
Sbjct 45 AAGTAGACCAAAAAAGCGGTTGGTGTAAGATCCCAAACTCACAGATTCCCAAATAATAGT 104
Query 58 ACT-CGTCTTCCTCTTCGAAACTCTCACCACTCACCAGCAGATCATCGGAGATGGGCGGA 116
| | | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 105 AATAC-TCTTCCTCTTCTCAACTCTCACCAGTCACCAGCAGATCATCGGAGATGGGCGGA 163
Query 117 GACGGCAAAGTTTTCACCTTGGCCGAGGTTTCTCAGCACAGTAGCTCTC-AGGATTGTTG 175
||||| ||||||||||||||| ||||||||||||||||||||||| | | ||||||||||
Sbjct 164 GACGGAAAAGTTTTCACCTTGTCCGAGGTTTCTCAGCACAGTAGCGC-CAAGGATTGTTG 222
Query 176 GATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGG 282
Query 236 TGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCAACTGATGATTTCGAGGATGTGGG 295
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 283 TGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCGACCGATGATTTCGAGGATGTGGG 342
Query 296 ACATAGTTCGACTGCAAAAGCCATGCTAGATGAGTACTATGTGGGTGATATTGACACAGC 355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 ACATAGTTCGACTGCGAAAGCCATGCTAGATGAGTACTATGTGGGTGATATTGACACAGC 402
Query 356 TACTGTCCCGGTTAAAGCTAAGTTTGTACCTCCTACTTCGAAGACAGTCGAGGATAATCA 415
|||||| |||||||||||||||||||| |||||||| |||| || || || || || |||
Sbjct 403 TACTGTGCCGGTTAAAGCTAAGTTTGTGCCTCCTACGTCGACGAAAGCCGTGGCTACTCA 462
Query 416 GGATAAGAGCTCGGATTTTGTCATTAAGCTCCTTCAGTTCCTTGTTCCTCTTCTAATCTT 475
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 463 GGATAAGAGCTCGGATTTTGTTATTAAGCTCCTTCAGTTCCTTGTTCCACTTCTAATCTT 522
Query 476 AGGGTTGGCTTTCGGCATCCGGTATTACACTAAGACCAAGACCCCTTCTTCTTGAA-GAT 534
||| |||||||||||||| ||||| ||||||||||||||| | ||||||||||||| |||
Sbjct 523 AGGCTTGGCTTTCGGCATTCGGTACTACACTAAGACCAAGGCTCCTTCTTCTTGAAAGAT 582
Query 535 TGAATTGTGGCCTAAGTGAATTGCTTGTGTACGACGTGGTAAAACTCTGTCTCGATCTCT 594
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 583 TGAATTGTGGCCTAAGTGAATTGCTTGTGTACGACGTGGTTAAACTCTGTCTCTACCTCT 642
Query 595 GTTTGTCTTGTAAGACATCATTATATTCTCTATTGCAATCAACTGAGAGACCTTTGATTT 654
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 643 GTTTGTCTTGTAAGACATCATTATATTCTCTATTCCAATCAACTGATAGACCTTTGATTT 702
Query 655 T-AAGTCATCTATCTTTTGTTGTCTTATATAAATCAAATCCATTTACA 701
| ||| |||||| |||| |||||||||||| |||||||||||||||||
Sbjct 703 TTAAGCCATCTACCTTT-GTTGTCTTATATCAATCAAATCCATTTACA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33958283372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5