BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494946
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2326 0.0
> AT5G48830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages. | chr5:19800169-19803098
REVERSE LENGTH=1874
Length=1874
Score = 2326 bits (1259), Expect = 0.0
Identities = 1622/1781 (91%), Gaps = 89/1781 (5%)
Strand=Plus/Plus
Query 1 TCCTTGTTGCTCTTCTCTTCTC-TGCTAATTTGAGAGATTGGGCTTAAGGATCTGCTTCC 59
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || |
Sbjct 115 TCCTTGTTGCTCTTCTCTTC-CATGCTAATTTGAGAGATTGGGCTTGAGGATCTG-TTTC 172
Query 60 CGAGATTAGGAAATGCTTTAGT--TGCGAGTTCTAAGGTTTCTTTTACCAATGGTTGGAC 117
|||||||| ||||||||||||| || ||||||||||| || |||||||||||||||||
Sbjct 173 CGAGATTACGAAATGCTTTAGTAGTGTGAGTTCTAAGG-TT-ATTTACCAATGGTTGGAC 230
Query 118 ATGTTGTTGTGTCTCCATCATTGTGCGTTCAGCTACGGATGCACAATG-------T--T- 167
|||||||||||||||| |||| | |||||||||| ||||||||||||| | |
Sbjct 231 ATGTTGTTGTGTCTCCTTCATCGAGCGTTCAGCTCCGGATGCACAATGTTCACTCTAGTC 290
Query 168 ---C-A----CTTCTCCACGAATCCTCGTGTGAAATTTTCCCA-A--AG--G-AAGA-C- 211
| | ||||||||| ||||||||||| ||||||||||| | || | |||| |
Sbjct 291 AAACAAGCTGCTTCTCCACAAATCCTCGTGTAAAATTTTCCCAGAGGAGTTGCAAGATCG 350
Query 212 T-T-TTGG-GAG-TTGCAAAATCATATCAA-G-GGATACTTCCTTGAATCTTGGATCGTC 265
| | || || || | |||| | | || | ||||||||||||||||||||||||
Sbjct 351 TATCAAGGAAAGCTTAC-AAAT--T-T-AATGTTTCTACTTCCTTGAATCTTGGATCGTC 405
Query 266 TAT-TTCTC-GTGGAGAGTCTACTTGTAAGTGTACTTGCTTGGCATCTCTTGCGGATTTT 323
| | ||||| | ||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct 406 T-TGTTCTCAG-GGAGATTCTACTTGTAAGTGTACTTGTTTTGCTTCTCTGGCGGATTTT 463
Query 324 GATGGTGTTGCTGGTTCTGGTTGGGTTCCTATTGGTGACCAAGTTCTTC-TGACGGCTAG 382
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 464 GATGGTGTTGCTGGTTCTGGTTGGGTTCCTATTGGTGACCAAGTTC-TCTTGACGGCTAG 522
Query 383 TATATTTCTTACCTATATGGCTGGAGTGATTCCTGTTCaaaaaaaCTCTACTTACTCTTC 442
|||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 523 TATATTTCTTACGTATATGGCTGGAGTGATTCCTGTTCAAAAAACCTCTACCTACTCTTC 582
Query 443 GAGAAAGAATACTACT-GTGGAGGAGGAT-CCAGATGTTGGAACTTCAGAATCTTCTGGT 500
| |||||| ||| | | |||||||| ||| ||||| |||||||||||| |||||||||||
Sbjct 583 GGGAAAGAGTACGA-TCGTGGAGGA-GATACCAGAAGTTGGAACTTCAAAATCTTCTGGT 640
Query 501 AGGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGAAGTAGTGAAAGTAAAGCTT 560
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 641 AGGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGATGTGGTGAAAGTAAAGCTT 700
Query 561 TTAGATTCTTTAGACGCCATCAAGCGTGAGAGTACACTTGGAAGCAAAGTTCTCAAACCC 620
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 701 TTAGATTCTTTAGACGCCATCAAGCGTGAGAATACACTTGGAAGCAAAGTTCTCAAACCC 760
Query 621 AAACCTCCCCAAGGGAAGCCCCCATTGAGTTTGTATGCGATATCTGAGGGGCCTCAGTTG 680
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 761 AAACCTCCCCAAGGGAAGCCCCCATTGAGTTTGTATGCGATATCTGAAGGGCCTCAGTTG 820
Query 681 TACTTGCTCTGGTCATGTTTTCAGAAACTTGAAGAAGAGACAAATAACATCTCTGACACA 740
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 821 TACTTGCTCTGGTCATGTTTTCAGAAACTTGAAGAAGAGACAAATAAGATCTCTGGCACA 880
Query 741 ATCAATTCAGATGAGTGGATGGTTAGTTTTACTCAAATTGTTCGGAG-AGCTTATCAAGC 799
|||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||
Sbjct 881 ATCAATTCAGATGAGTGGATGGGTAGTTTTACTCAAATTGTTC-GAGAAGCATATCAAGC 939
Query 800 AGCATGCACGGCTTGGCTAAAAAG-GGAACTATCTGTGG-GAA-AC--A--CTG------ 846
|||||||||||||||||| ||||| |||||| | ||||| || || | |||
Sbjct 940 AGCATGCACGGCTTGGCT-AAAAGAGGAACTGTATGTGGAAAACACTGATTCTGACAATA 998
Query 847 AT-T----C------TG-AGGCGATTACTCCTTTGCTGATCAGAATGCTAAATGAAAAGG 894
|| | | || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 999 ATCTAGCCCGTGATTTGCAGGCGATAACTCCTTTGCTGATCAGAATGCTAAATGAAAAGG 1058
Query 895 ACGCTATTTTTGACAAAATAAGAAAATCAGGCAAGGAGGATCTGTTTGCAGAATTTTTAT 954
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 ATGCTATATTTGACAAAATAAGAAAATCAGGCAAGGAGGATCTGTTTGCAGAATTTTTAT 1118
Query 955 ATTTCCATAGATTTGGATCTCCCGCGAAAGCTTTCTGCTACGACGTT-AGCTTCTTTCGC 1013
||||||||| |||||||||||||| ||||||||||||||| ||| || ||||||||||||
Sbjct 1119 ATTTCCATAAATTTGGATCTCCCGGGAAAGCTTTCTGCTATGAC-TTGAGCTTCTTTCGC 1177
Query 1014 ACTCACGGAGTTGCCATTTTGGAAGACTTCATGATAACATTGGCGGATGGGGTCGCTAGC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ACTCACGGAGTTGCCATTTTGGAAGACTTCATGATAACATTGGCGGATGGGGTCGCTAGC 1237
Query 1074 ATCTATCTAGAGCTCATTTCTGTAGACAGCAAATTTTCAAATGAAATGAATAGTGGAGGA 1133
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 ATCTATCTAGAGCTTATTTCTGTAGACAGCAAATTTTCAAATGAAATGAATAGTGGAGGA 1297
Query 1134 TTAGGTATTTGTAGCCTTTCTAGTCGAGCACTCCAAAAACTACGTAACGAGGTAGCTCTA 1193
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTAAGTATCTGTAGCCTTTCTAGTCGAGCACTCCAAAAACTACGTAACGAGGTAGCTCTA 1357
Query 1194 TACCAGTGGTTGCATCAGAATATGGAAGCAGTTGTATCGATGTATGAGGATCGCTTTGAC 1253
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1358 TATCAGTGGTTGCATCAGAATCTGGAAGCAGTTGTATCGATGTATGAAGATCGCTTTGAC 1417
Query 1254 CTCTACATTCTTAAAACTCAGGTTATCAACAACCTTGATGGTAGTGACGATACAGAAAGC 1313
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CTCTACATTCTTCAAACCCAGGTTATCAACAACCTTGATGGTAGTGACGATACAGAAAGC 1477
Query 1314 CGTAGCTGGTGGAGAAAGTTCAAACTGGGAAAAACTAAAGCTGCCTCATCATCACCCTTG 1373
| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1478 CTTAGTTGGTGGAGAAAGTTCACACTGGGAAAAACTAAAGCTGCCCCATCATCACCCTTG 1537
Query 1374 CGATACTCCATAATCAGCGATTTTTCATTGCCTGTTAAACGAACCAAGGAGCTTAAAGCT 1433
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1538 CGATACTCCATAATCAGCGACTTTTCATTGCCCGTTAAACGAACCAAGGAGCTTAAAGCT 1597
Query 1434 CTATCGGGATGGAGGTACTACTTCAGTCTGTTTCTGGAGTTATCAGACATCGGAATGCCA 1493
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1598 CTATCGGGATGG---TACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCA 1654
Query 1494 ATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTCACCTTG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 ATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTCACCTTG 1714
Query 1554 ATAGGTAGATCAGTCGGACTCATCTTCACCGGCATTAGACAGTCTCTCCGTTGGAAGTGA 1613
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1715 ATCGGTAGATCAGTCGGACTCATCTTCACCGGCATTAGACAGTCTCTCCGCTGGAAGTGA 1774
Query 1614 AATCTCATATAACCTTGATGGTAATTTTTT-GCGTCGACCTCATTTTTTGGTGTTCTTTT 1672
|||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1775 AATCTCATATAACCGTGATGGTAATTTTTTTGCGTCGACCTCATTTTT-GGTGTTCTTTT 1833
Query 1673 GATTATTCTTGTATGGTAAGTGATAAATTGGTGAAATATGA 1713
||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1834 CATTATTCTTGTTTGGTATGTGATAAATTGGTGAAATATGA 1874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87951354840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5