BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494947
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48840.1 | Symbols: PANC, PTS, ATPTS | homolog of bacterial ... 1555 0.0
> AT5G48840.1 | Symbols: PANC, PTS, ATPTS | homolog of bacterial
PANC | chr5:19803557-19805077 REVERSE LENGTH=1235
Length=1235
Score = 1555 bits (842), Expect = 0.0
Identities = 959/1016 (94%), Gaps = 6/1016 (1%)
Strand=Plus/Plus
Query 1 AAACACTCGTCGGAAGACGATCTCAAATCTCCGACAATGGAACCAGAAGTAATCAGGGAC 60
||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1 AAACATTCGTCGGAAGACAATCTCAATTTTCCGACAATGGAACCAGAAGTAATCAGAGAC 60
Query 61 AAAGACTCGATGAGAAAATGGTCTCGAGCCATGAGATTACAAGGCAAGACCATTGGTTTA 120
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 AAAGACTCTATGAGAAAATGGTCTCGAGCCATGAGATCACAAGGCAAGACCATTGGTTTA 120
Query 121 GTACCCACAATGGGTTACCTCCACGAAGGTCACTTATCTCTCGTCCGTCAATC-CTTAAC 179
||||| |||||||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 121 GTACCAACAATGGGTTACCTCCACGAAGGTCACTTATCTCTCGTTCGTCAATCAC-TAGC 179
Query 180 CCTCACTGACGTCACCGTCGTCTCAATCTACGTCAATCCAGGCCAATTCTCTTCCACTGA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 CCTCACTGACGTCACCGTCGTCTCAATCTACGTCAATCCAGGCCAATTCTCTCCCACTGA 239
Query 240 AGATCTCTCCACTTACCCATCTGATTTCTCCGGCGATCTCACCAAGCTCGCGGCTATTTC 299
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 240 AGACCTCTCCACATACCCATCTGATTTCTCCGGCGATCTCACTAAGCTCGCGGCTCTTTC 299
Query 300 CGGTGGTAAAGTCGTCGTCTTTAACCCCAAAAACCTCTACGATTACGGCGGTGAGACCAA 359
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 300 CGGTGGTAAAGTCGTCGTCTTTAACCCAAAAAACCTCTATGATTACGGCGGTGAGACGAA 359
Query 360 GAAGATAAATGACggtggtggtggtggtggGAGGGTTGTGAGTTGTGTAGAGGAAGGTGG 419
||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 360 GAAGATAAACGACGGTGGTGGTAATGGTGGGAGGGTAGTGAGTTGTGTGGAGGAAGGTGG 419
Query 420 GTTAGGGCATGAGACTTGGATTAGGGTTGAGAGATTGGAGAAAGGTTTGTGTGGGAAGAG 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GTTAGGGCATGAGACTTGGATTAGGGTTGAGAGATTGGAGAAAGGTTTTTGTGGGAAGAG 479
Query 480 TAGGCCTGTGTTCTTTAGAGGTGTTGCCACTATTGTTACTAAGCTTTTTAATATTGTTGA 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TAGGCCTGTGTTCTTTAGAGGTGTTGCTACTATTGTTACTAAGCTTTTTAATATTGTTGA 539
Query 540 GCCTGATGTTACTGTGTTTGGTAA-AAAGGATTATCAACAATGGCGGATTATTCAGAGAA 598
|||||||||| || |||||||||| |||| |||||||||||||| ||||||| |||||||
Sbjct 540 GCCTGATGTTGCTCTGTTTGGTAAGAAAG-ATTATCAACAATGGAGGATTATACAGAGAA 598
Query 599 TGGTTCGAGATCTTGATTTTGGAATAGAGATTGTAGGATCAGATATAGCTAGAGAAAAAG 658
|||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 599 TGGTTCGAGATCTTAATTTTGGTATTGAGATTGTAGGATCAGATATAGCTAGAGAAAAAG 658
Query 659 ATGGACTTGCAATGAGTTCTAGAAATGTGCGTCTTTCAGATGAAGAAAGGCAAAGGGCGT 718
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 659 ATGGACTTGCGATGAGTTCGAGAAATGTGCGTCTTTCAGATGAAGAAAGGCAAAGGGCTT 718
Query 719 TGTCTATAAGTAGGTCACTGGCCATGGCTAAAGCTTCTGTAACTGAAGGGCAAACCAGTT 778
|||||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||
Sbjct 719 TGTCTATAAGTAGGTCACTGGCCATGGCTAAAGCTTCTGTTGCAGAAGGGAAAACCAATT 778
Query 779 GTGCAGAGCTTAAGGGTATGATCATTCAACAAGTTGTTGGATCTGCAGGACGAGTAGATT 838
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGCAGAGCTTAAGGATATGATCATTCAACAAGTTGTTGGATCTGCAGGACGAGTAGATT 838
Query 839 ATGTTGAGATTGTTGACCAAGAAACTCTGGAAGGAGTAGAAGAGATAAAGAGTGGAGTAG 898
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 839 ATGTCGAGATAGTTGACCAAGAAACTCTTGAAGGAGTAGAAGAGATAAAGAGTGGGGTAG 898
Query 899 TGATTTGTGTTGCTGCTTGGTTTGGAACGGTCAGGCTCATTGACAACATTGAGATCGATG 958
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 899 TGATTTGTGTTGCTGCTTGGTTTGGAACGGTCAGGCTCATAGACAACATTGAGATCAATG 958
Query 959 TCTCTCTTTAGATCTAAATGTCTGCATCAAACTTCAT-AACAAAACTTGGAAGCTT 1013
||||||| ||||||| | ||| ||||||||||||||| || |||||||||||||||
Sbjct 959 TCTCTCTCTAGATCTCACTGTATGCATCAAACTTCATGAA-AAAACTTGGAAGCTT 1013
Score = 204 bits (110), Expect = 2e-51
Identities = 155/176 (88%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 1014 GCAAA-CCGAGAAGATTGATGAGAATCAACGTAAACTATCACAGCTTCATTATGTTGGTA 1072
||||| || | |||||||||||| |||| |||||||||| |||||||| ||||| ||
Sbjct 1061 GCAAATCC-AAAAGATTGATGAGTATCATCGTAAACTAT--CAGCTTCACCATGTTTGTG 1117
Query 1073 TGTAAGAGACAGGATGGAAGCAGGAATGATATTTGCACATTCTCATTGTATCTGTTATAA 1132
|||| | || ||||| |||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1118 TGTACGTGATAGGATTGAAGCAGGAATGATATTTGCACATTCTCGTTGTCTCTGTTATAA 1177
Query 1133 CCTCTTTTCATTGCAAACCTGAGTGTTT-GAGTTTTGAAATTTACACACAGCTTTG 1187
||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1178 CCTCTTT-CATTGCAAACCTGAGTGTTTTGAGTTTTGAATTTTACACACAGTTTTG 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5