BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494948
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-... 1506 0.0
> AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19805437-19807759 REVERSE
LENGTH=1120
Length=1120
Score = 1506 bits (815), Expect = 0.0
Identities = 904/948 (95%), Gaps = 2/948 (0%)
Strand=Plus/Plus
Query 21 AAAAAATATGGATAGAAGCTTGAAGAAGATGAAGAACAATTACAACAACTCGATAAAGAG 80
|||||| ||||| |||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 54 AAAAAAGATGGAGAGAAGCTTGAAGAAGACGAAGAACAATTATAACAACTCCATAAAGAG 113
Query 81 CAATCTTATGAAAGATGATGAAATGTTTCATGTGATTCACAAAGTTCCTTGTGGAGATAC 140
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 114 CAATCTTATGAAAGATGATGAATTGTTTCATGTGATTCACAAAGTTCCCTGTGGAGACAC 173
Query 141 TCCTTATGTCAGAGCCAAACATGCTCAGTTGATAGAGAAGAACCCGGAGATGGCAATAGT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCCTTATGTCAGAGCCAAACATGCTCAGTTGATAGAGAAGAACCCGGAGATGGCAATAGT 233
Query 201 GTGGTTTTGGAAAGCCATCAACACCGGAGACAGAGTAGACAGTGCTCTTAAGGACATGGC 260
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 234 GTGGTTTTGGAAAGCCATCAACACTGGAGACAGAGTAGACAGTGCCCTCAAGGACATGGC 293
Query 261 TGTTGTAATGAAACAACTTGACCGTTCCGAAGAAGCCATCGAAGCTATCAAATCCTTCCG 320
||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 294 TGTTGTAATGAAACAACTTGACCGTTCTGAAGAAGCTATTGAAGCTATCAAATCTTTCCG 353
Query 321 TCCTCGTTGCTCCAAGAACTCCCAAGATTCTCTAGACAATGTCCTCATCGACTTATACAA 380
||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 354 TCCTCGTTGTTCCAAGAATTCCCAAGATTCCCTTGACAATGTCCTCATCGACTTATACAA 413
Query 381 GAAATGCGGTAGAATGGAGGAGCAAGTTGAGTTGTTGAAGAGGAAGCTAAGGCAGATCTA 440
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 414 GAAATGTGGGAGAATGGAGGAGCAAGTTGAGTTGTTGAAGAGGAAATTAAGGCAGATCTA 473
Query 441 TCAAGGGGAGGCTTTCAACGGTAAACCCACCAAAACCGCTCGCTCTCATGGCAAAAAA-T 499
|||||| || |||||||| |||||||| ||||||||||||||||| || || |||||| |
Sbjct 474 TCAAGGAGAAGCTTTCAATGGTAAACCTACCAAAACCGCTCGCTCCCACGG-AAAAAAGT 532
Query 500 TTCAAGTGACCGTTCAACAAGAAATCTCAAGATTATTGGGTAACTTGGGGTGGGCATATA 559
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 533 TTCAAGTGACTGTTCAACAAGAAATCTCAAGATTACTGGGTAACTTGGGGTGGGCATATA 592
Query 560 TGCAACAAGCCAAGTACTTGTCGGCAGAGGCGGTATACAGAAAAGCCCAGATGGTTGAGC 619
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 593 TGCAACAAGCCAAGTACTTATCGGCCGAAGCGGTATACAGAAAAGCCCAGATGGTTGAGC 652
Query 620 CAGATGCAAACAAATCGTGCAACCTTGCGATGTGCCTTATCAAACAAGGCAGGTTTGAGG 679
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CAGATGCTAACAAATCGTGCAACCTTGCGATGTGCCTTATCAAACAAGGCAGGTTTGAGG 712
Query 680 AGGGAAGATTGGTTCTTGACGATGTTCTCGAGTCTAGGGTTTTGGGTGCGGATGATTGTA 739
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 713 AGGGAAGATTGGTTCTTGACGATGTTCTCGAGTATAGGGTTTTGGGTGCGGATGATTGTA 772
Query 740 GAACAAGGCAACGGGCCGAAGAGCTTCTGAGTGAATTAGAGTCTTCGCTGCCACGGATGC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GAACAAGGCAACGGGCCGAAGAGCTTCTGAGTGAATTAGAGTCTTCGCTGCCACGGATGC 832
Query 800 GAGATGCTGAGATGGAGGATGTCTTGGGGAATATCTTAGACGATGATTTTGTTCTTGGGC 859
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 833 GAGATGCTGAGATGGAGGATGTCTTGGGAAATATCTTAGACGATGACTTTGTTCTTGGGC 892
Query 860 TTGAACAGATGACATCCACTAGTTTTAAATCGAAGAGACTCCCAATCTTCGAACAGATCT 919
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 TTGAAGAGATGACATCCACTAGTTTTAAATCTAAGAGACTCCCAATCTTCGAACAGATCT 952
Query 920 CGTCTTTTAGAAATACATTAGTTTGCTAGTTTATTCATTTTGTGTTTT 967
||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 953 CGTCTTTTAGAAATACATTAGTTTGCTAGTTAATTCATTCTGTGTTTT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5