BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494955
Length=1946
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) s... 2957 0.0
AT2G06985.1 | Symbols: | hypothetical protein | chr2:2893061-2... 237 3e-61
> AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19832872-19834934 REVERSE LENGTH=2063
Length=2063
Score = 2957 bits (1601), Expect = 0.0
Identities = 1852/1970 (94%), Gaps = 30/1970 (2%)
Strand=Plus/Plus
Query 1 TTGATTCTCAATGAACCCAACACAGACCCTTTACTCTCCCGGCGGTAA--------C--C 50
||||||||||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct 16 TTGATTCTCAATGAACCCAACACAGACACTTTTCTCTCCCGGCGGTAACTCGCCGGCGTC 75
Query 51 --CTCCGGC-A-TC-T---TC--C-CTCTTTCCTCAAATCAACAACTGTCGAACTATAAG 99
||||||| | || | || | |||||||||||||||||||||||||||||||||||
Sbjct 76 TTCTCCGGCGAGTCATCCATCTTCACTCTTTCCTCAAATCAACAACTGTCGAACTATAAG 135
Query 100 AGACCTCTCTCAAATCCATGCCGTTTTCATCAAATCTGGTCAAATTCGAGACACTCTCGC 159
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 136 AGACCTCTCTCAAATCCATGCCGTTTTCATTAAATCTGGTCAAATGCGAGACACTCTCGC 195
Query 160 CGCCGCAGAGATTCTTCGATTCTGTGCGACCTCCGATCTCAACCACCGTGACCTTGATTA 219
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 196 CGCCGCAGAGATTCTCCGATTCTGTGCTACCTCCGATCTCCACCACCGTGACCTTGACTA 255
Query 220 CGCACACAAGATCTTTAATCAAATGCCTCAACGAAATTGCTTCTCTTGGAATACTATAAT 279
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CGCACATAAGATCTTTAATCAAATGCCTCAACGAAATTGCTTCTCTTGGAATACTATAAT 315
Query 280 CAGAGGTTTTAGTGAGAGTGACGAAGACAAAGCTCTAATTGCAATCACATTGTTCTTTAA 339
||||||||| |||||||||||||||||||||||||| || ||||||||||| |||| |
Sbjct 316 CAGAGGTTTCAGTGAGAGTGACGAAGACAAAGCTCTGATCGCAATCACATTATTCTACGA 375
Query 340 GATGATGAGTGATGAGTTTATCGAACCGAACCGGTTTACGTTTCCGTCTGTGCTTAAGGC 399
||||||||||||||||||| | |||||||| |||||||||||||| ||||| ||||||||
Sbjct 376 GATGATGAGTGATGAGTTTGTTGAACCGAATCGGTTTACGTTTCCCTCTGTTCTTAAGGC 435
Query 400 GTGTGCGAAAACTGGGAAGATTCAAGAAGGTAAGCAGATTCATGGTTTGGCTTTGAAGTA 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TTGTGCGAAAACTGGGAAGATTCAAGAAGGTAAGCAGATTCATGGTTTGGCTTTGAAGTA 495
Query 460 TGGATTTGGTGGTGATGAGTTTGTGATGAGTAATCTTGTTAGAATGTATGTGATGTGTGG 519
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TGGATTTGGTGGTGATGAATTTGTGATGAGTAATCTTGTTAGAATGTATGTGATGTGTGG 555
Query 520 TTTGATGAAAGATGCTTGTGTTTTGTTTTATAAGAACATTATTGAGAGAGAGATGGTGGT 579
||| |||||||||||| |||| |||||||||||||||||||| |||| ||| ||||||||
Sbjct 556 TTTTATGAAAGATGCTCGTGTGTTGTTTTATAAGAACATTATAGAGAAAGATATGGTGGT 615
Query 580 GATGATTGATAGAAGAAAGAGAGATGGTGAAGTTGTTTTATGGAATGTTATGATTGATGG 639
||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 616 GATGACTGATAGAAGAAAGAGAGATGGTGAAATAGTTTTGTGGAATGTTATGATTGATGG 675
Query 640 TTATATGAGACTTGGTGATTGTAAAGCTGCAAGGATGTTGTTTGATAAAATGCGTCAAAG 699
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 676 TTATATGAGACTTGGTGATTGTAAAGCTGCACGGATGTTGTTTGATAAAATGCGTCAAAG 735
Query 700 AAGCGTTGTTTCGTGGAATACGATGATATCGGGTTATTCGCAGAACGGtttttttAAGGA 759
||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||
Sbjct 736 AAGCGTTGTTTCGTGGAATACGATGATATCGGGTTATTCGCTGAACGGGTTTTTCAAAGA 795
Query 760 TGCTGTTGAGGTTTTTCGTGAGATGAAGAAAGGGGAGGATATCCGTCCGAATTATGTTAC 819
|||||||||||||||||||||||||||||||||||| || | | ||||||||||||||
Sbjct 796 TGCTGTTGAGGTTTTTCGTGAGATGAAGAAAGGGGAT-AT-TA-GACCGAATTATGTTAC 852
Query 820 TTTGGTTAGTGTTCTTCCTGCGATTTCACGGCTTGGGTCGTTAGAGTTAGGAGAATGGTT 879
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 853 TTTGGTTAGTGTTCTTCCTGCTATTTCACGGCTTGGGTCTTTAGAGTTGGGAGAATGGTT 912
Query 880 GCATTTGTATGCTGAGGATAGCGGAATTAGGATTGATGATGTGCTTGGCTCTGCTTTGAT 939
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 913 GCATTTGTATGCAGAGGATAGTGGAATTAGGATTGATGATGTGCTTGGCTCTGCTTTGAT 972
Query 940 TGATATGTACTCGAAATGTGGGATCATCGAGAAAGCGATT-AGGGTGTTTGAGAGATTAC 998
||||||||| ||||||||||||||||| |||||||||||| | | | |||||||| ||||
Sbjct 973 TGATATGTATTCGAAATGTGGGATCATTGAGAAAGCGATTCATG-TATTTGAGAGGTTAC 1031
Query 999 CTCGAGAGAACGTGATTACTTGGAGTGCGATGATAAACGGGTTTGCTATACACGGCCAGG 1058
|| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1032 CTAGAGAGAACGTGATTACTTGGAGTGCGATGATTAACGGGTTTGCTATACATGGCCAGG 1091
Query 1059 CAGGTGATGCTATTGACTGTTTTTGTAAAATGAGGCAGGCGGGAGTTCGGCCTAGCGATG 1118
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1092 CAGGTGATGCTATTGACTGTTTTTGTAAAATGAGGCAGGCTGGAGTTCGACCTAGTGATG 1151
Query 1119 TTGCCTACATTAGTCTCTTGACTGCTTGTAGCCATG-CTGGTTTGGTAGAAGAAGGAAGG 1177
|||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 1152 TTGCCTACATTAATCTTTTGACTGCTTGTAGCCATGGCGGGTT-GGTAGAAGAAGGAAGG 1210
Query 1178 AGATATTTCAGTCAAATGGTGAGTGTAGATGGTTTAGAGCCTAGGATTGAACACTACGGG 1237
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1211 AGATATTTCAGTCAGATGGTGAGTGTGGATGGTTTAGAGCCTAGGATTGAACACTACGGG 1270
Query 1238 TGTATGGTTGATCTATTGGGTCGTTCGGGTCTTCTTGATGAGGCTGAGGAGTTTATACTT 1297
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TGTATGGTTGATTTATTGGGTCGTTCGGGTCTTCTTGATGAGGCTGAGGAGTTTATACTT 1330
Query 1298 AATATGCCTATAAAACCAGATGATGTTATATGGAAAGCACTTTTGGGTGCTTGCAGAATG 1357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1331 AATATGCCTATAAAACCAGATGATGTGATATGGAAAGCACTTTTGGGTGCTTGCAGAATG 1390
Query 1358 CACGGAAATGTCGAGATGGGCAAGCGTGTGGCCAACATTCTGATGGATATGGTTCCTCAT 1417
|| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1391 CAGGGAAATGTCGAGATGGGCAAGCGCGTTGCCAATATTCTGATGGATATGGTTCCTCAT 1450
Query 1418 GACAGTGGAGCTTATGTTGCTCTCTCAAACATGTATGCATCTCAAGGAAACTGGTCAGAG 1477
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1451 GACAGTGGAGCTTATGTCGCCCTCTCAAACATGTATGCTTCTCAAGGAAACTGGTCAGAG 1510
Query 1478 GTTTCAGAGATGAGGCTGAGAATGAAGGAGATGGATATAAGAAAAGATCCC-GGGTGTAG 1536
||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 1511 GTTTCAGAGATGAGGCTGAGAATGAAGGAGAAGGATATAAGAAAAGA-CCCTGGGTGTAG 1569
Query 1537 TTGGATCGACATTGATGGCGTGCTTCACGAGTTTCTTGTGGAAGATGATTCTCACCCAAG 1596
|| |||||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1570 TTTGATCGACATTGATGGCGTGCTTCATGAGTTTGTTGTGGAAGATGATTCACACCCAAA 1629
Query 1597 AGCCAAAGAAATCAACTCAATGCTCGTAGAAATCTCAGACAAACTGAGACTAGCCGGGTA 1656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1630 AGCCAAAGAAATCAACTCAATGCTCGTAGAAATCTCAGACAAACTGAGACTAGCTGGGTA 1689
Query 1657 TAGACCAATCACCACACAGGTTTTGTTAAACTTGGAGGAAGAGGATAAAGAAAACGCACT 1716
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1690 TAGACCAATCACCACACAGGTTTTGTTAAACTTGGAGGAAGAAGATAAAGAAAATGTACT 1749
Query 1717 TCATTATCACAGCGAGAAGATGGCTACTGCGTTTGGGTTGATAAGCACGAGCCCTGGCAA 1776
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1750 TCATTACCACAGCGAGAAGATCGCTACAGCGTTTGGGTTGATAAGCACGAGCCCTGGCAA 1809
Query 1777 ACCAATACGCATTGTTAAGAACCTACGCATCTGTGAGGATTGTCATTCGTCCATCAAACT 1836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1810 ACCAATACGCATTGTTAAGAACCTACGTATCTGTGAGGATTGTCATTCGTCCATCAAACT 1869
Query 1837 CATCTCCAAAGTTTACAAGAGAAAGATAACGGTACGAGACCGGAAACGTTTTCACCATTT 1896
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1870 CATCTCCAAAGTTTACAAGAGAAAAATAACGGTACGAGACCGGAAACGTTTTCACCATTT 1929
Query 1897 CCAAGATGGCTCATGCTCGTGCATGGATTATTGGTGAAAGTAAACATAAA 1946
||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1930 CCAAGATGGCTCATGCTCGTGTATGGATTATTGGTGAAACTAAACATAAA 1979
> AT2G06985.1 | Symbols: | hypothetical protein | chr2:2893061-2893306
FORWARD LENGTH=246
Length=246
Score = 237 bits (128), Expect = 3e-61
Identities = 212/250 (85%), Gaps = 15/250 (6%)
Strand=Plus/Plus
Query 1683 TAAACTTGGAGGAAGAGGATAAAGAAAACGCACTTCATTATCACAGCG-AGAAGAT--GG 1739
|||||||||||||||||||||||||| || |||||||||| |||| | ||| ||| ||
Sbjct 8 TAAACTTGGAGGAAGAGGATAAAGAAGACTCACTTCATTACCACA-TGAAGATGATCGGG 66
Query 1740 CTAC-TGCGTTTGGGTTGATAAGCACGAGCCCTGGCAAACCAATACGCATTGTTAAGAAC 1798
|||| | || | ||||||||||||| ||| | ||||||| |||||| |||| ||||||||
Sbjct 67 CTACAT-CG-TCGGGTTGATAAGCATGAGTCGTGGCAAAGCAATACACATTCTTAAGAAC 124
Query 1799 CTACGCATCTGTGAGGATTGTCATTCGTCCATCAAACTCATCTCCAAAGTTTACAAGAGA 1858
|||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 125 CTACACATCTGTGAGGATTTTCATTCGTCCATCAAACTCATCTCCAAAGTTTAGAAGAGA 184
Query 1859 AAGATAACGGTACGAGACCGGAAACGTTTTCACCATTTCCAAGATGGCTCATGCTCGTGC 1918
||| | || || |||||| ||||||||||||| ||||||||||||||| |||
Sbjct 185 AAGTT-----TA-GA--CCGGAATTATTTTCACCATTTCTAAGATGGCTCATGCTTTTGC 236
Query 1919 ATGGATTATT 1928
|| |||||||
Sbjct 237 ATTGATTATT 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96385046400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5