BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494958
Length=493
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48950.1 | Symbols: | Thioesterase superfamily protein | ch... 723 0.0
> AT5G48950.1 | Symbols: | Thioesterase superfamily protein |
chr5:19846180-19847435 FORWARD LENGTH=639
Length=639
Score = 723 bits (391), Expect = 0.0
Identities = 461/495 (93%), Gaps = 3/495 (1%)
Strand=Plus/Plus
Query 1 AATGGATCCAAAATCGCCGGAATTTATCATTGATCCGCCGCTTAAAATCTTAGGATTTGT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 20 AATGGATCCAAAATCGCCGGAATTTATCATTGATCAGCCGCTTAAAATCTTAGGATTTGT 79
Query 61 ATTCGAAGAGCTCTCCGCCACCAGAGTCGCCGGCCATCTCACCGTAACTGAAAAATGTTG 120
|||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct 80 ATTCGATGAGCTCTCCGCCACCAGAGTCTCCGGCCACCTCACCCTAACTGAAAAATGTTG 139
Query 121 CCAGCCGTTCAAAGTCTTGCACGGCGGCGTATCGGCTCTGATCGCTGAGGGAATCGCCAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 140 CCAGCCGTTCAAAGTCTTGCACGGCGGCGTATCGGCTCTGATCGCTGAGGCACTCGCCAG 199
Query 181 TCTCGGCGCCGGAATCGCTTCCGGTTATAAACGCGTCGCCGGAATCCATCTCTCAATTCA 240
|||||||||||||||||| || |||| |||||||||||| |||||||||||||| |||||
Sbjct 200 TCTCGGCGCCGGAATCGCCTCTGGTTTTAAACGCGTCGCTGGAATCCATCTCTCTATTCA 259
Query 241 CCACCTCCGACCTGCTGCTCTCGGCGATATCGTCTTTGCCGAATCTTTTCCAGTTTCCGT 300
||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| || ||
Sbjct 260 CCACCTCCGTCCTGCTGCTCTCGGCGAAATTGTCTTCGCCGAATCTTTTCCAGTCTCAGT 319
Query 301 CGGTAAAAATATTCAGGTGTGGGAGGTCCGGTTATGGAAAACCAAGAAAACCGAGAAACC 360
||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 320 CGGCAAAAATATTCAGGTGTGGGAGGTCCGGTTATGGAAAGCTAAGAAAACCGAGACACC 379
Query 361 GGAGAACAAGAA-AATGGTATCAACATCGCGGGTTACTCTCTTCTGCGGTTTACCTATAC 419
||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 380 GGACAACAA-AATAATGGTATCAACATCACGGGTTACTCTCTTCTGCGGTTTACCTATAC 438
Query 420 CAGACCATGTAAAAGATGCTCCGGACGAGTTGAAGAAAGTTATATCCAAGTTGTAA-TTC 478
| |||||||| ||||||||||| |||||| ||||||||||||||||||| || ||| |||
Sbjct 439 CGGACCATGTTAAAGATGCTCCAGACGAGCTGAAGAAAGTTATATCCAAATTATAAATTC 498
Query 479 AAATTGTATCTCTCT 493
||||||||||| |||
Sbjct 499 AAATTGTATCTATCT 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23509580796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5