BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494959
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48960.1 | Symbols: | HAD-superfamily hydrolase, subfamily ... 3472 0.0
AT2G12290.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 100 5e-20
> AT5G48960.1 | Symbols: | HAD-superfamily hydrolase, subfamily
IG, 5'-nucleotidase | chr5:19849543-19853564 FORWARD LENGTH=2213
Length=2213
Score = 3472 bits (1880), Expect = 0.0
Identities = 2081/2177 (96%), Gaps = 17/2177 (1%)
Strand=Plus/Plus
Query 1 ACTCTCATCTTCTAGAAGTTAAAACCTCACGCCATTTTCCGAATTCAAACGTCGATGTTC 60
||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct 5 ACTCTCATCTTCTAGAAGTTAAAACATCACGCCATCTTCCGAATTCAAACGCCGATGTTC 64
Query 61 TGTCGTTTTCTGTCCCACACACTGGAGCGAGTATAGAGATGTCTAATTTCTCAGTTAACG 120
|||||||||||||| |||| | |||| |||| || ||||| ||||||||||||||||||
Sbjct 65 TGTCGTTTTCTGTCTCACATATTGGAACGAGCGTAAAGATGCCTAATTTCTCAGTTAACG 124
Query 121 TTCCCCAACTCTCGTCTCTCTACAGTACACAAACGCCCAAAGTGAGAATGAATCTATGTG 180
||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 125 TTCCCCAACTCTCATCTCTTTACAGTACAAAAACGCCCAAAGTGAGAATGAATCTATGTG 184
Query 181 CCGATCAGGTGTTCGACAAAATGCTTCTTTGGAGAGATATGGCAACGAAGATGAGGTTTC 240
|||||||||||||||| |||| |||||| |||||||||||| |||||||||||| ||||
Sbjct 185 CCGATCAGGTGTTCGATAAAAAGCTTCTGTGGAGAGATATGTCAACGAAGATGAAATTTC 244
Query 241 CTTCTTGTTCTAATGCGGAATTACCTGATTTGAGGAAAAG-AAGCAA-A--AGGAGATCT 296
|||||| |||| ||||||||||||||||||||||||||| || ||| | ||| |||||
Sbjct 245 CTTCTTTTTCTGCTGCGGAATTACCTGATTTGAGGAAAAGTAA-CAAGAGGAGGGGATCT 303
Query 297 CTTAGGATGATCAAGTGCAGAGCCGCCGGAGCTGATGGTGGTCGTGTGGCTGTTGGAGAT 356
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 304 CTTAGGATGATCAAGTGCAGAGCCGCCGGAGCTGACGGTGGACGCGTGGCTGTTGGGGAT 363
Query 357 GATGTGTTTTCGGTTACTACTTCTTCTAAGTATGAAGTTGACTATTTGGGTCAAAGTACT 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 364 GATGTGTTTTCGGTTACTACTTCTTCTAAGTATGAAGTTGACTATCTGGGTCAAAGTACT 423
Query 417 AAGGGAGATTTGAATCTCAAGCTTGACCCACTTCAGTCATTTGGAGATGGGCAGGCTACA 476
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 424 AAGGGAGATTTGAATCTCAAGCTTGACCCTCTTCAGTCATTTGGAGATGGGCAGGCTACA 483
Query 477 TTGGAAGGTCCAATTGAGGAGGTAGCGAGAACAGAGGCTCAAGCCGCGGAAAATTTGATT 536
||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 484 TTGGAGGGTCCCATTGAGGAGGTAGCGAGAACAGAGGCTCAAGCGGCTGAAAATTTGATT 543
Query 537 AGGGAGTTGGGTATCCAAGGTCCTTTCTCTGCGCAACACTCTCCTCGGGGTATATTTTGT 596
|| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 544 AGAGAGTTGGGTATCCAAGGCCCTTTCTCTGCACAGCACTCTCCTCGGGGTATATTTTGT 603
Query 597 AGTCGTACATTGAATCTACGGTCCATTAGTGCAATTGGGTATGATATGGATTACACTTTG 656
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 604 AGTCGTACATTGAATCTTCGGTCCATTAGTGCAATTGGATATGATATGGATTACACTTTG 663
Query 657 ATGCACTACAATGTCATGGCTTGGGAAGGAAAGGCTTATGACTATTGCATGGAAAATCTG 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 ATGCACTACAATGTCATGGCTTGGGAAGGAAAGGCTTATGACTATTGCATGGAAAATCTA 723
Query 717 AAGAGCATGGGTTTCCCGGTTGATGGACTTGCTTTTGATCCAGAACTGGTTATCAGAGGT 776
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 724 AAGAGCATGGGTTTCCCTGTTGATGGACTTGCTTTTGATCCGGAACTGGTTATCAGGGGT 783
Query 777 CTCATGATTGACAAAGAGAAAGGTAATTTAGTCAAGGCCGATAGATTTGGGTATGTGAAG 836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 784 CTCATGATTGACAAAGAGAAAGGTAATTTAGTTAAGGCCGATAGATTTGGGTATGTGAAG 843
Query 837 AGAGCCATGCACGGTACAAAGATGTTATCAAATAAAGCTGTCAGTGAGATCTATGGAAGG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGAGCCATGCACGGTACAAAGATGTTATCAAATAAAGCTGTCAGTGAGATCTATGGAAGG 903
Query 897 GAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAGTTTCTCAATACAtttttttCTGTT 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 904 GAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAGTTTCTCAATACATTTTTTTCAGTT 963
Query 957 TCAGAGGCTCTGGCTTATGCACAGATGGTTGATAGATTGGATGATGGATTTATTTCGGCA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TCAGAGGCTCTGGCTTATGCACAGATGGTTGATAGATTGGATGATGGATTTATTTCGGCA 1023
Query 1017 GATCTTGGCACTCTTGATTATAAAGGACTGTACAAGGCTGTTGCAAAAGCTCTCTTCAGA 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1024 GATCTTGGCACTCTTGATTATAAAGGACTGTATAAGGCTGTTGCAAAAGCTCTCTTCAGA 1083
Query 1077 GCACATGTTGAAGGACAACTTAAGAGTGAGATAATGTCCAAGCCGGAACTATTTGTCGAG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GCACATGTTGAAGGACAACTTAAGAGTGAGATAATGTCCAAGCCGGAACTATTTGTCGAG 1143
Query 1137 CCAGACCCAGAATTACCTTTAGCTCTTTTAGATCAAAAGGAGGCTGGTAAGAAGCTCTTG 1196
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CCAGACCCAGAACTACCTTTAGCTCTTTTAGATCAAAAGGAGGCTGGTAAGAAGCTCTTG 1203
Query 1197 CTTATCACAAACTCGGATTATCACTACACAGACAAAATGATGAAGCATTCATTTAATAAA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1204 CTTATCACAAACTCGGATTATCACTACACAGACAAAATGATGAAGCATTCATTTAACAAA 1263
Query 1257 TTCCTTCCCAATGACATGGACTGGCGGGATCTTTTTGAAATGGTGATAGTTTCTGCGAGG 1316
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1264 TTCCTTCCCAATGACATGGACTGGCGAGATCTTTTTGACATGGTGATAGTTTCTGCGAGG 1323
Query 1317 AAACCAGAGTTCTTCCAGATGTCACACCCTTTGTACGAGGTTGTGACTGGAGAGGGTTTG 1376
||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||
Sbjct 1324 AAACCAGAGTTCTTCCAGATGTCGCACCCTCTATATGAGGTTGTGACTGGAGAGGGTTTG 1383
Query 1377 ATGCGTCCATGCTTCAAGGCTGAAACAGGAGGTTTGTACTCGGGAGGAAGTGCTCAAATG 1436
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1384 ATGCGTCCATGCTTCAAGGCTGAAACAGGAGGTTTGTACTCAGGAGGAAGTGCTCAAATG 1443
Query 1437 ATAGAGAGTTCACTCAACGTTCATGGAGATGAGATTTTGTATGTTGGTGACCACATCTAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 ATAGAGAGTTCACTCAACGTTCATGGAGATGAGATTTTGTATGTTGGTGACCACATCTAC 1503
Query 1497 ACTGATGTCAGCGTATCCAAAGTCCATCTCAGGTGGCGAACTGCACTGATTTGCCGTGAA 1556
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1504 ACTGATGTCAGCGTATCCAAAGTCCATCTCAGGTGGCGAACTGCGCTGATTTGCCGTGAA 1563
Query 1557 CTGGAAGAAGAGTATATGGCTCTAATTGGCAGTCGTGGTCACCGAGAAGAGCTAATAGAG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 CTGGAAGAAGAGTATATGGCTCTAATTGGCAGTCGTGGTCACCGAGAAGAGCTAATAGAG 1623
Query 1617 CTTATAAATCAAAAAGAAGTTGTTGGGGATCTCTTTAACCAGCTCCGGCTTGCTCTTCAA 1676
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 1624 CTTATAAATCAAAAAGAGGTTGTTGGGGATCTCTTTAACCAACTTCGGCTTGCTCTTCAA 1683
Query 1677 AGACGAAGCAAAGGCCGTCCTGCTCAGACCCTCGCTGCTACCAACTTAGATGATCAAGAA 1736
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1684 AGACGAAGCAAAGGCCGTCCTGCTCAGACTCTCGCTGCTACCAACTTGGATGATCAAGAA 1743
Query 1737 CTGACAGAGACTATGCAGAAGCTTCTCATTGTAATGCAAAGACTAGATGACAAGATTGGT 1796
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1744 CTGACAGAGACCATGCAAAAGCTTCTTATTGTAATGCAAAGACTAGATGACAAGATTGGT 1803
Query 1797 CTAATGCTGGAAACAGACGGCGAGCTCTTCAACAAAAGGTGGGGCTTCCTCTCACGCGCG 1856
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1804 CTAATGCTGGAAACAGATGGCGAGCTCTTTAACAAAAGGTGGGGCTTCCTCTCACGCGCG 1863
Query 1857 GGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAGTATGCGGATATATACACA 1916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 GGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAGTATGCGGATATATACACA 1923
Query 1917 TCAAGAGTCTCCAACTTCCTCAACTACACACCCTTCATGTATTTCCGCTCACAAGAGCAG 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TCAAGAGTCTCCAACTTCCTCAACTACACACCCTTCATGTATTTCCGCTCACAAGAGCAG 1983
Query 1977 TCACTGGCTCACGATTCTCCGCTTCAAGATGCGGGTATGGAAAACTAGCAGTTGTGCCCA 2036
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||
Sbjct 1984 TCACTGGCTCACGATTCTCCGCTTCCAGATGCGGGTATAGAAAACTAGCGGTTGTGACCA 2043
Query 2037 AACTCG-------TTGTGT-T-GTAATATATTTAGATGAAAA--CTGTGGATAGAAGAAA 2085
|| | | |||||| | ||||||| |||||||||||| ||||||||||||||||
Sbjct 2044 AAGTTGAGGCAACTTGTGTGTTGTAATATTTTTAGATGAAAAAACTGTGGATAGAAGAAA 2103
Query 2086 TGTAACAATAGAAATTCTTAAGCTCAAAC-TCTATTTTATGTATAAAATGTGTAATCCTA 2144
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||
Sbjct 2104 TGTAACAATAGAAATTCTTAAGCTCAAAAGTCTACTTTATGTATAAAATGTGTATTCTTA 2163
Query 2145 TTCTCTGAATTGAGGTT 2161
||||||||||||| |||
Sbjct 2164 TTCTCTGAATTGAAGTT 2180
> AT2G12290.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SBP (S-ribonuclease binding protein) family protein
(TAIR:AT4G19700.1); Has 66 Blast hits to 66 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:4924100-4924501 REVERSE LENGTH=402
Length=402
Score = 100 bits (54), Expect = 5e-20
Identities = 54/54 (100%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 879 AGTGAGATCTATGGAAGGGAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGTGAGATCTATGGAAGGGAGTTAGTTGACCTGCGGAACCAGAGTCGATGGGAG 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107178163575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5