BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494960
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48970.1 | Symbols: | Mitochondrial substrate carrier famil... 2130 0.0
> AT5G48970.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:19856830-19859763 REVERSE LENGTH=1481
Length=1481
Score = 2130 bits (1153), Expect = 0.0
Identities = 1292/1357 (95%), Gaps = 17/1357 (1%)
Strand=Plus/Plus
Query 21 CTCTATC-G-GAGAACACGAACGTTGACGGAGAAAGAATCTCT---C-TC-AACTTTTTT 73
||||||| | ||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 30 CTCTATCGGAGAGAACACGAACGTTGACGGAGAAAGAATCTCTCAGCTTCTTTTTTTTTT 89
Query 74 AATAATCTTTTTCCAAGTCAAATCATTTTCAATCTCCACCCAGCTCTCAAATCCGCGGCA 133
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 90 TATAATCTTTTTCCGAGTCAAATCATTTTCAATCTCCACCCAACTCTCAAATCCGCGGCA 149
Query 134 AACGTTTAAGGGTCATCTCAAATTTGCTTACTTTTT-CCCGGAAAAT-CATCAATGTCGA 191
|||||||||||||||||||||| || ||| |||||| |||||||| | ||||||||||||
Sbjct 150 AACGTTTAAGGGTCATCTCAAAGTTCCTTGCTTTTTCCCCGGAAACTCCATCAATGTCGA 209
Query 192 GCCTTTTCGTTTCTCGCTTTATCAGCTTATAGAGA-CGAAAACCCTaaaaaaaTATGAGT 250
|||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||| |
Sbjct 210 CCCTTTTCGTTTCTCGCTTTATCTGCTTATAGAGACCAAAAACCCTAGAAAAATATGATT 269
Query 251 CCTACGACGGCGACGG-TG--GAGGATCCGGGACAGATTAAACGTGCCCTCATTGATGCT 307
|||||||||||||||| || || || |||||||||||||||||||| || |||||||||
Sbjct 270 CCTACGACGGCGACGGTTGATGATGAGCCGGGACAGATTAAACGTGCTCTGATTGATGCT 329
Query 308 TCTGCCGGAGCTATCTCTGGTGGTGTTTCTCGTACCT-TTACTTCTCCTCTTGATGTCAT 366
||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 330 TCTGCCGGAGCTATCTCTGGTGGTGTTTCTCGT-TCTGTAACTTCTCCTCTTGATGTCAT 388
Query 367 TAAGATTAGATTTCAGGTTCAATTAGAACCGACGACTTCATGGGGTTTGGTTCGGGGTAA 426
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 389 TAAGATTAGATTTCAGGTTCAGCTAGAACCGACGACTTCATGGGGTTTGGTTCGGGGAAA 448
Query 427 CTTGTCAGGAGCATCTAAGTATACTGGAATGGCT-CAGGCAACTAAAGATATATTTAGAG 485
|||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 449 CTTGTCAGGAGCTTCTAAGTATACTGGAATGG-TACAGGCGACTAAAGATATATTTAGAG 507
Query 486 AAGAAGGTTTTCGGGGGTTTTGGCGGGGTAATGTGCCAGCTTTGCTTATGGTCATGCCAT 545
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 508 AAGAAGGTTTTCGGGGGTTTTGGCGGGGTAATGTGCCAGCTTTGCTCATGGTCATGCCGT 567
Query 546 ATACTTCAATTCAGTTTACAGTACTACATAAGCTGAAATCTTTTGCATCGGGTTCTACTA 605
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 568 ATACTTCAATTCAGTTTACAGTACTACATAAGCTGAAATCTTTTGCATCTGGTTCTACTA 627
Query 606 AAACAGAGGATCATATACATTTGAGCCCTTATCTATCCTTCGTCAGTGGAGCGTTAGCAG 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AAACAGAGGATCATATACATTTGAGCCCTTATCTATCCTTCGTCAGTGGAGCGTTAGCAG 687
Query 666 GATGTGCTGCTACTCTAGGATCTTATCCTTTTGATCTTCTAAGGACAATATTGGCTTCAC 725
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 688 GATGTGCTGCTACTCTAGGATCTTATCCTTTTGATCTTTTAAGGACAATATTGGCCTCAC 747
Query 726 AAGGGGAGCCTAAGGTGTATCCAACAATGAGGTCTGCGTTTGTTGATATTATTCAGTCTC 785
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 748 AAGGGGAGCCTAAGGTGTATCCAACAATGAGGTCTGCTTTTGTCGATATTATTCAGTCTC 807
Query 786 GAGGCATAAGAGGATTGTATAATGGATTAACACCAACTCTTGTTGAGATTGTGCCTTACG 845
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GAGGTATAAGAGGATTGTATAATGGATTAACACCAACTCTTGTTGAGATTGTGCCTTACG 867
Query 846 CTGGCCTGCAATTTGGCACGTATGATATGTTTAAGCGTTGGATGATGGACTGGAATCGAT 905
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CTGGCCTGCAATTTGGCACATATGATATGTTTAAGCGTTGGATGATGGACTGGAATCGAT 927
Query 906 ACATATTATCCTCCAAAAACCCGATCAACGTGGACACCAACCTTTCTAGCTTCCAGCTTT 965
||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 928 ACAAATTATCCTCCAAAATCCCGATCAATGTGGACACCAACCTTTCTAGCTTCCAGCTTT 987
Query 966 TTATTTGTGGGCTTGGGGCGGGCACTAGCGCCAAGCTCGTCTGCCATCCTCTTGATGTGG 1025
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 988 TCATTTGTGGGCTTGGGGCGGGCACTAGCGCCAAGCTCGTCTGCCATCCCCTTGATGTGG 1047
Query 1026 TCAAAAAACGATTCCAGATTGAAGGTTTACAGAGACATCCAAGATATGGAGCCCGAGTGG 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TCAAAAAACGATTCCAGATTGAAGGTTTACAGAGACATCCAAGATATGGAGCCCGAGTGG 1107
Query 1086 AGCGACGTGCATACAGAAACATGTTAGACGGTCTCAGACAGATTATGATATCAGAAGGGT 1145
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1108 AGCGACGTGCATACAGAAACATGTTAGACGGTCTTAGACAGATTATGATATCAGAAGGGT 1167
Query 1146 GGCATGGGCTGTACAAAGGCATTGTGCCATCGACTGTGAAAGCTGCTCCTGCTGGTGCTG 1205
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GGCATGGTCTGTACAAAGGCATTGTGCCATCGACTGTGAAAGCTGCTCCTGCTGGTGCTG 1227
Query 1206 TAACCTTTGTGGCCTATGAGTTTACCTCCGACTGGTTGGAATCAATTTCTTGGTAGAGAT 1265
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1228 TAACCTTTGTGGCCTATGAGTTTACCTCCGATTGGTTGGAGTCAATTTCTTGGTAGAGAT 1287
Query 1266 TTTACTCTTTTGATACTTATATCTTACTGTCTCTAGCATTTTTTATAGGCGCATATAAAC 1325
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1288 TTTACTCTTTTGATACTTATATCTTACTGTCTCTAGCATTTATTATAGGCTCATATGAAC 1347
Query 1326 ATTGATCATTTTTGGAATGTAAACGTCAAAGTGTTGT 1362
|| ||||||||||||||||||||||||||||||||||
Sbjct 1348 ATCGATCATTTTTGGAATGTAAACGTCAAAGTGTTGT 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5