BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494961
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49000.2 | Symbols: | Galactose oxidase/kelch repeat superf... 1382 0.0
> AT5G49000.2 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19864527-19865645 FORWARD LENGTH=1119
Length=1119
Score = 1382 bits (748), Expect = 0.0
Identities = 928/1014 (92%), Gaps = 15/1014 (1%)
Strand=Plus/Plus
Query 1 TTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTCGAACCCTCGTTGCTTCACCG 60
||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||| |||
Sbjct 118 TTGTACTACCCAATTCTCTCGTTAGTCTCCAAGAGCTCTCGAACCCTCGTTACTTCGCCG 177
Query 61 GAGCTTTACAAGACTCGATCTTTCTTCAACCGCACGGAGAGTTGTCTCTATGTGTGCTTA 120
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 178 GAGCTATACAAGACTCGATCTTTCTTCAACCGAACGGAGAGTTGTCTCTATGTATGCTTA 237
Query 121 GAATTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTACCGAAAACCTAATCAAACC 180
|| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 238 GATTTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTACCGAAAACC---T--AA-C 291
Query 181 CTAACCAACATCACCGAGAAGACAAAGAACTCAAGTGGGTACGTTTTGGCCCCAATCCCA 240
| || ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 292 C-AA--AACATCACCGAGAAGACAAAGAACTCAAGCGGGTTTGTTTTAGCCCCAATCCCA 348
Query 241 AATCACCATTCCCCTAGTGCGAGTCTCGTTGCGGTTGGGTCTAATATCTATGCCATTGGT 300
||||||||||| | |||| ||||| ||||||| |||||||||| |||||||||||||||
Sbjct 349 AATCACCATTCACATAGTTCGAGTATCGTTGCTATTGGGTCTAACATCTATGCCATTGGT 408
Query 301 GGATCCATTGAGAATGCACCGTCTTCTAGGGTCTCAATTTTAGACTGCAGGTCTCATACG 360
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 409 GGATCCATTGAGAATGCACCCTCTTCTAAAGTCTCAATTTTAGACTGCAGGTCTCATACA 468
Query 361 TGGCACGAGGCGCCAAGCATGCGGATGAAGCGGAATTACCCAGCTGCTAATGTTGTTGAT 420
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 469 TGGCACGAGGCACCAAGCATGAGGATGAAGCGGAATTATCCAGCTGCTAATGTTGTTGAT 528
Query 421 GGGAAGATTTATGTAGCAGGAGGCTTGGAAGACTTTGATTCCTCTAAATGGATGGAGGTT 480
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 529 GGGAAGATTTATGTAGCAGGAGGCTTGGAAGAGTTTGATTCATCTAAATGGATGGAGGTT 588
Query 481 TTCGATACGAAGACTCAAACTTGGGAGTTTGTGTTGTGCCCTTTAGCGGAGAGATTCGTA 540
||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 589 TTCGATATAAAGACTCAAACTTGGGAGTTTGTGTTAAGCCCTTTAGCGGAGAGATTTATA 648
Query 541 TACAGGAGCTTAGTGATTGATGGAGAAATCTACATTTTTGGGGATAAGGTTGTGACCTAC 600
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 649 TATAGGAGCTTGGTGATTGAAGGAGAAATCTACATTTTTGGGGATAAGGTTGTGACTTAC 708
Query 601 AAGCCAAAAGAAGATAGATGGGGAGATGAAGGAGAGCATCAGAGTATGGATTTAGGTTTG 660
||||| ||||||||||||||||||| || |||||| ||||||||||||||||| || |||
Sbjct 709 AAGCCTAAAGAAGATAGATGGGGAGGTGTAGGAGAACATCAGAGTATGGATTTGGGATTG 768
Query 661 TATTTTCATTCGTATTGCGTTATAGATAACGTTCTCTATTGTTATCGACCTGGTGGAATC 720
| ||||||||| |||||||| |||||||| || || ||||||||||| ||||||||||||
Sbjct 769 TTTTTTCATTCTTATTGCGTGATAGATAATGTACTGTATTGTTATCGTCCTGGTGGAATC 828
Query 721 AAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAGGGGTTTGAAAGGATTGTCT 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 829 AAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAGGGGTTTGAAGGGATTGTCT 888
Query 781 AAGCTTGCTAGTAGTTGTGTTAGGTTGGCGGATTATGGTGGAAAGATTGCGATTTTTTGG 840
|||||||||||||| ||||||| ||| |||||||||||||||||||| || |||| |||
Sbjct 889 AAGCTTGCTAGTAGCTGTGTTAAGTTAGCGGATTATGGTGGAAAGATGGCTCTTTTGTGG 948
Query 841 GACAAGTAT-TCCCCTTCTAGTGGTTATAAGAGTCATAT-GATTTCGTGTGCGGTGATTT 898
||||||||| |||| || |||||| ||||||||||| | |||||||||||||||| |||
Sbjct 949 GACAAGTATATCCC-TTGTAGTGGGAATAAGAGTCAT-TCGATTTCGTGTGCGGTGGTTT 1006
Query 899 CCCTTG-GAAGTTGCAAAAATCAGGGTATTCGAGGAAAGGTTGAATGGTTTGATGATATG 957
|||||| || | ||||| |||||||||||| | ||||||||||| |||||||||||||||
Sbjct 1007 CCCTTGAGA-GATGCAAGAATCAGGGTATTAGGGGAAAGGTTGAGTGGTTTGATGATATG 1065
Query 958 CTTACAGTCCCTAGCTCTTATAACTTTGTGGGTGCTCTTGCTGCTACTCTTTGA 1011
||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CTTACGGTACCTAGCTCTTATAACTTTGTGGGTGCTCTTGCTGCTACTCTTTGA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5