BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494964
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49020.1 | Symbols: ATPRMT4A, PRMT4A | protein arginine meth... 2505 0.0
AT3G06930.2 | Symbols: ATPRMT4B, PRMT4B | protein arginine meth... 1439 0.0
> AT5G49020.1 | Symbols: ATPRMT4A, PRMT4A | protein arginine methyltransferase
4A | chr5:19871251-19874920 FORWARD LENGTH=1914
Length=1914
Score = 2505 bits (1356), Expect = 0.0
Identities = 1532/1617 (95%), Gaps = 11/1617 (1%)
Strand=Plus/Plus
Query 32 ACATACTGTATCCTCAAAAACAATGGAGATTCCTTCTCTGAATAAGCAGCAAGAGTTCAC 91
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ACATACTGTATTCTC-AAAACAATGGAGATTCCTTCTCTGAATAAGCAGCAAGAGTTCAC 128
Query 92 TCTCGCCTCCGTCACTGATCTCACTTCTTCTTCCTCATCTCCTTCGTCATCTCCTGTTGT 151
|||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 129 TCTCGCCTCCGTCACTGATCTCACTTCTCCTTCCTCATCTCTTTCGTCCTCTCCTGTTGT 188
Query 152 AGCTACGTTTTCATGCGTTAATGAAGTCAAGGAACTCCAATTTCAGGAATCTG-AATCGT 210
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 189 AGCTACGTTTTCATGCGTTAATGAAGTCAAGGAACTCCGATTTCAGGAATC-GAAATCGT 247
Query 211 CTGATGGTTTCAGTTTTGATCTTAGTTCAACTCAGTTGTTCAAGTTGGGGCCGCTTCTGT 270
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 248 CTGATGGTTTCAGTTTTGATCTTAGTTCGACTCAGTTGTTCAAGTTGGGGCCACTTCAGT 307
Query 271 TCATTTGTGTATCTGATATTTC-A--GGTTCTGCAAAGGAGAATTCGTCATTTTCTCGAG 327
||| ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||
Sbjct 308 TCACTTGTGTATCTGATGGTTCGATTTCTTCTGCAAAGGAGAAATCGTCATTTTCTCGAG 367
Query 328 GAGTTGTAATAAAATTTAGAGACGACAAGGATAGCAAGGAATTTTGTGATTCATTTGAGG 387
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 368 GAGTTGTAATAAAATTTAGAGATGAGAAGGATAGCAAGGAGTTTTGTGATTCATTTGAGG 427
Query 388 AATGTAAAAAGGAT--T-CTGTTAAACAAGGATCATCCTTTTTGAACGGAACTGTTGTTT 444
|||||||||||||| | ||||||||||||||||| |||| ||||||||| |||||||
Sbjct 428 AATGTAAAAAGGATGATGCTGTTAAACAAGGATCAGCCTTGCCGAACGGAACAGTTGTTT 487
Query 445 CAGCTAATAAAAGCAAGTTCGATGATAAGATAGAGGCTGCTTCAGCCAAAATGTATTTCC 504
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 488 CAGCTAATAAAAGCAAGTTCGATGATAAGATTGAGGCTGCTTCAGCCAAAATGTATTTCC 547
Query 505 ATTATTATGGACAACTTCTACATCAGCAAAATATGCTACAAGATTATGTGCGGACAGGTA 564
||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 548 ATTATTATGGACAACTTTTACATCAGCAAAATATGCTACAGGATTATGTGAGGACGGGTA 607
Query 565 CATATCATGCTGCAGTCATGGAGAACCGTTCAGACTTTTCTGGCCGTGTTGTTGTCGATG 624
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 608 CATATCATGCTGCAGTCATGGAGAACCGTTCAGATTTTTCTGGCCGTGTTGTTGTCGATG 667
Query 625 TGGGCGCTGGAAGTGGAATTTTGTCATTGTTTGCTGCACTGGCAGGTGCCAAGCATGTGT 684
| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 668 TAGGCGCTGGTAGTGGAATTTTGTCAATGTTTGCTGCACTGGCTGGTGCCAAGCATGTGT 727
Query 685 ATGCTGTTGAAGCGTCAGAAATGGCTGAATATGCCCGTAAGCTGATTGCTGGGAACCCAT 744
||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 728 ATGCTGTGGAGGCGTCAGAAATGGCTGAATATGCCCGTAAACTGATTGCTGGAAACCCAT 787
Query 745 TGCTTGCTGA-ACGGATCACAGTCATCAAGGGAAAAATTGAGGATATTGAGTTGCCTGAG 803
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGCTTGCTGAGA-GGATCACAGTCATCAAGGGAAAAATTGAGGATATTGAGTTGCCTGAG 846
Query 804 AAGGCCGATGTTTTGATCTCTGAACCAATGGGCACCCTATTGGTCAATGAGAGGATGTTG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 847 AAGGCCGATGTTTTGATCTCTGAACCAATGGGCACCCTATTGGTCAATGAGAGGATGCTG 906
Query 864 GAAACATATGTTATTGCTAGGGACCGTTTTCTGTCTCCAAACGGAAAAATGTTTCCGACA 923
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 907 GAAACATATGTTATTGCTAGGGATCGTTTTCTGTCTCCAAACGGAAAAATGTTTCCGACG 966
Query 924 GTTGGAAGGATCCACATGGCACCTTTCGCCGATGAATTCTTATTTGTTGAAATGGCAAAT 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GTTGGAAGGATCCACATGGCACCTTTCGCCGATGAATTCTTATTTGTTGAAATGGCAAAT 1026
Query 984 AAGGCTTTATTTTGGCAGCAACAGAACTATTATGGAGTTGATTTGACACCTCTATATGTA 1043
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AAGGCTTTGTTTTGGCAACAACAGAACTATTATGGAGTTGATTTGACACCTCTATATGTA 1086
Query 1044 TCAGCCCACCAGGGTTATTTTTCCCAGCCCGTGGTCGATGCATTTGATCCAAGATTATTG 1103
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1087 TCAGCCCACCAGGGTTATTTTTCCCAGCCCGTGGTTGATGCATTTGATCCGAGATTATTG 1146
Query 1104 GTGGCTCCCTCGATGTTTCATATGATAGATTTCACTAAAATGACGGAAGAACAATTTTAT 1163
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1147 GTGGCTCCCTCGATGTTTCATGTGATAGATTTCACTATGATGACGGAAGAACAATTTTAT 1206
Query 1164 GAGATCGATATCCCGTTGAAGTTCACAGCGTCAGTGTGTACCAGGGTGCATGGACTTGCG 1223
||||| |||||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct 1207 GAGATTGATATCCCGTTGAAGTTCACTGCGTCTGTGTGTACCAGAATTCATGGACTTGCG 1266
Query 1224 TGTTGGTTCGACGTTCTTTTTGACGGGAGCACGGTACAAAGATGGTTCACGACTGCTCCT 1283
|| ||||| || ||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1267 TGCTGGTTTGATGTTCTCTTTGACGGGAGCACGGTGCAAAGATGGTTTACAACTGCTCCC 1326
Query 1284 GGTGCACCAACGACCCATTGGTACCAAATAAGATGTGTTCTCTCGCAGCCTATTCATGTC 1343
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1327 GGTGCACCAACAACCCATTGGTACCAAATAAGATGTGTTCTCTCGCAGCCTATTCACGTC 1386
Query 1344 ATGGCAGGGCAAGAGATTACTGGTAGACTTCATTTGGTTGCCCACAGTGCTCAGAGTTAT 1403
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1387 ATGGCAGGGCAAGAGATCACTGGTAGACTTCATTTGATTGCCCACAGTGCTCAGAGTTAC 1446
Query 1404 ACTATAAATCTAACCCTCTCAGCTAAAATGTGGGGTCCCGGTGCCAATCAAGGTGGAATC 1463
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 ACTATAAATCTAACACTCTCAGCTAAAATGTGGGGTCCCGGTGCCAATCAAGGTGGAATC 1506
Query 1464 CTCCAGACATCATCGTGCAAACTCGATCTAAAGGAACCCTATTATAGAATGTCTCAGCCA 1523
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1507 CTCCAGACATCATCGTGCAAACTCGATCTGAAGGAACCCTATTATAGAATGTCTCAGCCA 1566
Query 1524 CAAGTTTACCCTACACAAGAACCACCAGCTCAGTCGCAAGACATACATATACATGGCGAT 1583
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 1567 CAGGTTTACCCTACACAGGAACCACCAGCTCAGTCGCAAGACATACATATACATAGTGAT 1626
Query 1584 GACTTGGAAGAAGTAGAGTTACTACAACAAACCGCAAACGCTCAGCTCTAGAACTAG 1640
|||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1627 GACTTGGAAGAACTAGAGTTGCTACAACAAAACGCAAACGCTCAGCTCTAGAACTAG 1683
> AT3G06930.2 | Symbols: ATPRMT4B, PRMT4B | protein arginine methyltransferase
4B | chr3:2185143-2189387 REVERSE LENGTH=2025
Length=2025
Score = 1439 bits (779), Expect = 0.0
Identities = 1244/1466 (85%), Gaps = 42/1466 (3%)
Strand=Plus/Plus
Query 102 GTCACTGATCTCACTTCTTCTTCCTCATCTCCTTCGTCATCTCCTGTTGTAGCTACGTTT 161
|||||||||||| |||| |||| | | | | | ||||| ||||| | |||||||||||||
Sbjct 146 GTCACTGATCTCTCTTCGTCTT-C-CGT-TTCGTCGTCCTCTCCAGCTGTAGCTACGTTT 202
Query 162 TCATGCGTTAATGAAGTCAAGGAACTCCAATTTCAGGAATCTGAATCGTCTGATGGTTTC 221
|| | |||| ||| ||||| ||| |||| ||||| | |||| || ||| | || |||||
Sbjct 203 TCCTACGTTGATGGAGTCACGGAGCTCCGATTTCTGCAATCGGATTCGACCCATTGTTTC 262
Query 222 AGTTTTGATCTTAG-TTCAACTCAGTTGTTCAAGTTGGGGCC-GCTTC-TGTTCATTTGT 278
| |||||||| | | ||| ||||||| |||||||||||||| | | | | ||||| |||
Sbjct 263 AATTTTGATC-TCGCTTCCGCTCAGTTATTCAAGTTGGGGCCAG-TCCAT-TTCATCTGT 319
Query 279 GTATCTGATATTTCAGGTTCTGCAAAGGAGAATTCGTCATTTTCTC-GAGGAGTTGTA-A 336
||||||||| |||| ||||| || ||||||| ||||| || | ||||| | | |
Sbjct 320 GTATCTGATGGTTCAAGTTCTTCAGAGGAGAA---ATCATTCTC-CAAAGGAG-TCAATA 374
Query 337 TAAAATTTAGAGACGACAAGGATAGCAAGGAATTTTGTGATTCATTTGAGGAATGTAAAA 396
||||||| | | | || |||||||||||||| |||||||| || ||||| || || | ||
Sbjct 375 TAAAATTCAAAAATGAGAAGGATAGCAAGGATTTTTGTGAGTCCTTTGAAGAGTGGAGAA 434
Query 397 AGGATTCTGTTAAACAAGGATCATCCTTTTTGAACGGAACTGTTGTTTCAGCTAATAAAA 456
| ||||||||| |||||||||||||| || ||||| ||||||||||||||||
Sbjct 435 ATGATTCTGTTGTTCAAGGATCATCCTTGCAAAATGGAAC---AGTTTCAGCTAATAAAA 491
Query 457 GCAAGTTCGATGATAAGATAGAGGCTG-CTTCAGCCAAAATGTATTTCCATTATTATGGA 515
|||||||||| ||||||||||||| | | || || ||||||||||| ||||||||||||
Sbjct 492 GCAAGTTCGACAATAAGATAGAGGC-GTCATCGGCAAAAATGTATTTTCATTATTATGGA 550
Query 516 CAACTTCTACATCAGCAAAATATGCTACAAGATTATGTGCGGACAGGTACATA-TCATGC 574
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 551 CAACTTCTACATCAGCAAAATATGCTACAAGATTATGTGCGGACAGGTACGTACT-ATGC 609
Query 575 TGCAGTCATGGAGAACCGTTCAGACTTTT-CTGGCCGTGTTGTTGTCGATGTGGGCGCTG 633
|||||||||||||| | |||||| |||| |||| |||||||| ||||||||||| ||||
Sbjct 610 CGCAGTCATGGAGAATCATTCAGA-TTTTGCTGGTCGTGTTGTGGTCGATGTGGGTGCTG 668
Query 634 GAAGTGGAATTTTGTCATTGTTTGCTGCACTGGCAGGTGCCAAGCATGTGTATGCTGTTG 693
| ||||| ||||||||| ||||||| || | ||| |||||||| ||||||||||| ||||
Sbjct 669 GGAGTGGCATTTTGTCAATGTTTGCGGCCCAGGCTGGTGCCAAACATGTGTATGCGGTTG 728
Query 694 AAGCGTCAGAAATGGCTGAATATGCCCGTAAGCTGATTGCTGGGAACCCATTGCTT-GCT 752
|||| |||||||||||||| ||||| ||||||||||||||||| |||||||| || |||
Sbjct 729 AAGCATCAGAAATGGCTGAGTATGCTCGTAAGCTGATTGCTGGAAACCCATTA-TTCGCT 787
Query 753 GAACGGATCACAGTCATCAAGGGAAAAATTGAGGATATTGAGTTGCCTGAGAAGGCCGAT 812
|| || ||||||||||||||||| ||| |||||||||| |||||||||||||| || |||
Sbjct 788 GACCGAATCACAGTCATCAAGGGTAAAGTTGAGGATATCGAGTTGCCTGAGAAAGCAGAT 847
Query 813 GTTTTGATCTCTGAACCAATGGGCACCCTATTGGTCAATGAGAGGATGTTGGAAACATAT 872
||||||| |||||||| ||||||||| |||||||||| ||||| ||||| ||| | |||
Sbjct 848 ATTTTGATTTCTGAACCGATGGGCACCTTATTGGTCAACGAGAGAATGTTAGAATCGTAT 907
Query 873 GTTATTGCTAGGGACCGTTTTCTGTCTCCAAACGGAAAAATGTTTCCGACAGTTGGAAGG 932
|| ||||||||||| |||||| || ||||||| || ||||||||||| || || ||||||
Sbjct 908 GTAATTGCTAGGGATCGTTTTATGACTCCAAAAGGCAAAATGTTTCCCACTGTCGGAAGG 967
Query 933 ATCCACATGGCACCTTTCGCCGATGAATTCTTATTTGTTGAAATGGCAAATAAGGCTTTA 992
|| |||||||||||||| | ||||||||||||||| |||| ||||||||||||||| |
Sbjct 968 ATTCACATGGCACCTTTTTCTGATGAATTCTTATTTATTGAGATGGCAAATAAGGCTATG 1027
Query 993 TTTTGGCAGCAACAGAACTATTATGGAGTTGATTTGACACCTCTATATGTATCAGCCCAC 1052
|||||||| || ||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 1028 TTTTGGCAACAGCAGAACTATTATGGAGTTGATCTGACACCTCTATATGGATCAGCGCAC 1087
Query 1053 CAGGGTTATTTTTCCCAGCCCGTGGTCGATGCATTTGATCCAAGATTATTGGTGGCTCCC 1112
|| ||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |
Sbjct 1088 CAAGGTTATTTTTCTCAGCCCGTGGTTGATGCATTTGATCCGAGATTATTAGTGGCTTC- 1146
Query 1113 TC-GATGTTTCATATGATAGATTTCACTAAAATGACGGAAGAACAATTTTATGAGATCGA 1171
|| |||||| || ||||||||||||||| |||||| ||||||| | ||||| ||||| ||
Sbjct 1147 TCCGATGTTCCACATGATAGATTTCACTCAAATGAAGGAAGAAGATTTTTACGAGATTGA 1206
Query 1172 TATCCCGTTGAAGTTCACAGCGTC-AGTGTGTACCAGGGTGCATGGACTTGCGTGTTGGT 1230
|||||||||||||||||| || || | |||| ||||| ||||||||||||| || ||||
Sbjct 1207 TATCCCGTTGAAGTTCACTGCTTCCA-TGTGCACCAGAATGCATGGACTTGCCTGCTGGT 1265
Query 1231 TCGACGTTCTTTTTGACGGGAGCACGGTACAAAGATGGTTCACGACTGCTCCTGGTGCAC 1290
| |||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||||||
Sbjct 1266 TTGACGTTCTCTTTGACGGGAGCACGGTCCAAAGATGGCTCACAACTGCTCCCGGTGCAC 1325
Query 1291 CAACGACCCATTGGTACCAAATAAGATGTGTTCTCTCGCAGCCTATTCATGTCATGGCAG 1350
| || || |||||||||||||| |||||||||||||||||||||||| | || |||||||
Sbjct 1326 CTACAACGCATTGGTACCAAATCAGATGTGTTCTCTCGCAGCCTATTTACGTAATGGCAG 1385
Query 1351 GGCAAGAGATTACTGGTAGACTTCATTTGGTTGCCCACAGTGCTCAGAGTTATACTATAA 1410
| |||||||| |||||||||||||||||| | |||||||||||||||||||| || |||
Sbjct 1386 GTCAAGAGATCACTGGTAGACTTCATTTGATAGCCCACAGTGCTCAGAGTTACACCATAG 1445
Query 1411 ATCTAACCCTCTCAGCTAAAATGTGGGGTCCCGGTGCCAA-TCAAGGTGGAATCCTCCAG 1469
||||||| | ||||||||||||||||| |||||||| || |||||| ||||| |||||
Sbjct 1446 ATCTAACTTTATCAGCTAAAATGTGGGGGCCCGGTGC-AAGTCAAGGCGGAATTCTCCA- 1503
Query 1470 A-CATC-ATCGTGCAAACTCGATCT-AAAGGAACCCTATTATAGAATGTCTCAGCCACAA 1526
| |||| | | |||||| ||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 1504 ATCATCGA-CATGCAAATTCGATCTGAAAG-AACCTTATTATAGAATGTCTCAGCCACAA 1561
Query 1527 GTTTACCCTA---CACAAGAACCACC 1549
| |||||| |||||||||||||
Sbjct 1562 GCATACCCTGTTGCACAAGAACCACC 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5