BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494970
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49060.1 | Symbols: | Heat shock protein DnaJ, N-terminal w... 1829 0.0
> AT5G49060.1 | Symbols: | Heat shock protein DnaJ, N-terminal
with domain of unknown function (DUF1977) | chr5:19886498-19888463
FORWARD LENGTH=1498
Length=1498
Score = 1829 bits (990), Expect = 0.0
Identities = 1182/1274 (93%), Gaps = 15/1274 (1%)
Strand=Plus/Plus
Query 57 AATTA-GGGATTTGAAGAGTTATGGATGGTAATAAGGATGATGCGTCTCGTTGTTTGAGA 115
||||| ||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 86 AATTAGGGGTTTTGAATAGTGATGGATGGTAATAAGGATGATGCGTCTCGGTGTTTGAGA 145
Query 116 ATCGCCGAAGACGCCATTGCTTCTGGTGATAAAGAACGAGCGTTGAAATTTATCAAGATG 175
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 146 ATCGCCGAAGACGCCATTGTTTCTGGTGATAAAGAACGAGCGTTGAAATTCATCAATATG 205
Query 176 GCGAAACGGCTTAATCCAAGTCTCTCTGTTGATGAACTTGTTGCTGCTTGTGACAATCTG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GCGAAACGGCTTAATCCAAGTCTCTCTGTTGATGAACTTGTTGCTGCTTGTGACAATCTG 265
Query 236 GATTCAATTTCGAGGAATTCGTCTGTTAGTGAGAAGCTTAAAACTGTGGATGGTGATGAT 295
|||||| ||||||||||||| |||||||| ||||||||||||||| |||| | | ||||
Sbjct 266 GATTCAGTTTCGAGGAATTCTTCTGTTAGCGAGAAGCTTAAAACTATGGA-CG-G-TGAT 322
Query 296 GATGATAAGCTTGAGACTGGGAAAATGAAGTATAATGAGGAAAATGTGGAGTTGGTTAGG 355
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 323 GATGATAAGCTTGAGACTGGGAAAATGAAGTATACTGAGGAAAATGTGGATTTGGTTAGG 382
Query 356 AATATTA-AGAGGAACAACGATTATTATGCGATTTTGGGTTTGGAAAAGAATTGTTCGGT 414
||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 383 AATATTATA-AGAAACAATGATTATTATGCGATTTTGGGTTTGGAAAAGAATTGTTCTGT 441
Query 415 TGAAGAGATTAGAAAAGCTTATAGGAAGTTGTCTTTGAAAGTTCATCCGGATAAGAACAA 474
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 442 TGATGAGATTAGAAAAGCTTATAGGAAGTTGTCTTTGAAAGTTCATCCAGATAAGAACAA 501
Query 475 GGCTCCTGGTTCAGAGGAAGCGTTTAAGAAAGTTTTGAAGGCGTTTACTTGTTTGAGTGA 534
||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 502 GGCACCTGGTTCAGAGGAGGCGTTTAAGAAAGTTTCGAAAGCGTTTACTTGTTTGAGTGA 561
Query 535 TGGTAATTCGAGACGCCAGTATGATCAGGTGGGGATTGTTGATGAGTTTGATCATGTTCA 594
|||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 562 TGGTAACTCGAGAAGACAGTTTGATCAGGTGGGGATTGTTGATGAGTTTGATCATGTTCA 621
Query 595 GAGGCGGAATCGTAGGCCGAGGAGGAGATATAACACGCGGAATGATTTCTTTGATGATGA 654
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 622 GAGGCGGAATCGTAGGCCGAGGAGGAGATATAATACGCGGAATGATTTCTTTGATGATGA 681
Query 655 GTTTGATCCTGATGAGATATTCAGGGCGTTTTTTGGTCAACAACGAGACATGTTCCGTGA 714
|||||||||||| |||||||||||| || ||||||||||||||||||| |||| ||||
Sbjct 682 GTTTGATCCTGAAGAGATATTCAGGACGGTTTTTGGTCAACAACGAGAGGTGTTTCGTGC 741
Query 715 TTCTCGTGCTTATAGGACTAGACAAGCACGTAACCAATTCCGAGAGGAGGAGCCTAATGT 774
||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 742 TTCTCATGCTTATAGGACTAGACAACCACGTAACCAATTCCGAGAGGAGGAGATTAATGT 801
Query 775 GGCTGGACCAAGTTGTTTGACGATTATTCAGATTCTACCATTCTTTCTGCTTTTGTTACT 834
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 802 TGCTGGACCAAGTTGTTTGACGATTATTCAGATTTTGCCATTCTTTCTGCTTTTGTTGCT 861
Query 835 GGCTTATCTACCCTTTTCTGAGCCCGACTATTCTTTGCACAAGAACCAGTCTTATCAGAT 894
||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 862 GGCTTATTTACCCTTTTCTGAGCCTGACTATTCTCTGCACAAGAACCAGTCTTATCAGAT 921
Query 895 ACCAAAGACGACACAGAATATGGAGATTAGCTTTTATGTTAGATCAGCATCAGCCTTCGA 954
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 922 ACCAAAGACGACACAGAATACGGAGATTAGTTTTTATGTTAGATCAGCATCAGCCTTTGA 981
Query 955 TGAGAAGTTTCCGCTTGGTAGCTCTA-CTCGAGCCAACCTTGAGGGCAACGTGATCAAAG 1013
||||||||||||||| ||||||| | | ||||| |||||||||||||||||||||||||
Sbjct 982 TGAGAAGTTTCCGCTCAGTAGCTC-AGCCCGAGCTAACCTTGAGGGCAACGTGATCAAAG 1040
Query 1014 AGTATAGACATTTTCTATTCCAGTCTTGTCGCATTGAGCTTCAAAAACGGCGGTGGAACA 1073
|||| | ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1041 AGTACAAACACTTTCTTTTCCAGTCTTGTCGCATTGAGCTTCAAAAACGTCGGTGGAACA 1100
Query 1074 AGAAGATACCAACCCCTAACTGCAAT-GAACTTCAAGATCGTGGATTTGTTGACAGGCAA 1132
||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||
Sbjct 1101 AGAAGATACCAACCCCTCACTGCA-TCGAACTTCAAGATCGCGGATTTGTTGACAGGCAT 1159
Query 1133 ATACCGATATGATACCAGTTCAAAACTGTCCAACATTCGCTGAAGACCTGCCAGATTTTG 1192
|||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||| |
Sbjct 1160 ATACCGATATGATACCAGCTCAGAACTTTCCAACATTCGCTGA-GACCTGCCAGATTTGG 1218
Query 1193 ATGTTCCAGAGGTTCTTGGGCTG-ACCGTATAAACAGTAATGTATGCAAGGAGGGTAGCT 1251
||||||||||||||||||||||| | |||||| | ||||||| || | ||||| || |
Sbjct 1219 ATGTTCCAGAGGTTCTTGGGCTGCAA-GTATAATCTGTAATGTGTGTAGGGAGGATAACA 1277
Query 1252 ATAATCTCTTTTGTTTG-TTGCATATAGAGTTGGAGATGATAATTCCTAGGAGAATATTG 1310
||| ||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||
Sbjct 1278 ATAGTCTCTTTTGTTTGGTT-CATATAGATTTGGAGATGATAATTCCTAGGTGAATATTG 1336
Query 1311 AGAACAACAAAGAA 1324
||||||||||||||
Sbjct 1337 AGAACAACAAAGAA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5