BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494971
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49070.1 | Symbols: KCS21 | 3-ketoacyl-CoA synthase 21 | chr... 2189 0.0
> AT5G49070.1 | Symbols: KCS21 | 3-ketoacyl-CoA synthase 21 | chr5:19888751-19890145
REVERSE LENGTH=1395
Length=1395
Score = 2189 bits (1185), Expect = 0.0
Identities = 1297/1352 (96%), Gaps = 4/1352 (0%)
Strand=Plus/Plus
Query 31 TCAGAGCTGACGACGCTTCTCAGCTCAGGTGGTTCTGTCTTTGAGATCTTTGCCGCTTTG 90
||||||||||| || |||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 46 TCAGAGCTGACAACACTTCTCAGCTCAGGTGTTTCTGTCTTTGAGATCTTTGCCGGTTTG 105
Query 91 CTAGTATTGCATCTGGCCTACCAAAGAATTAGAGCAAGCGTCAAAGTTTACTTACTTGAT 150
|||||| |||||||| |||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 106 CTAGTAGTGCATCTGATCTACCAAAGAATTAGAACAAGAGTCAAAGTCTACTTACTTGAT 165
Query 151 TTCACTTGTTACCGAGCACCTGACTCAAACCGCGTCCCAATGTCAACTCTTATCGAAACC 210
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 TTCACTTGTTACCGGGCACCTGACTCAAACCGCGTCCCAATGTCAACTCTTATCGAAACC 225
Query 211 ATCTACCTCGATGACAAGCTTGATCAAGAGAGTATTGACTTCCAAGCCCGGATTCTTGAG 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ATCTACCTCGATGACAAGCTTGATCAAGAGAGTATTGACTTCCAAGCCCGGATTCTTGAG 285
Query 271 AGGTCCTGGTTAAGTAACCAAACCAGCATTCCTCCTTCCTTGATGGAAATACCCCTCAAG 330
|||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 286 AGGTCCTGGTTAAGCAACCAAACCAGTATTCCTCGTTCCCTGATGGAAATACCCCTCAAG 345
Query 331 AAATCTCTCTCCTCGGTCAAAATCGAAACCATGACCACTATCTTCACCTCTGTTGAGGAT 390
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 346 AAATCTCTCTCCTCGGTCAAAATAGAAACCATGACCACTATCTTCACCTCTGTTGAGGAT 405
Query 391 CTCCTGAAGAAAAACAAACTAAGCCCAAGAAGCATAGACATACTGATAACAAATTGCAGT 450
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 406 CTCCTGAGGAAAAACAAACTAAGCCCAAGAAGCATAGACATACTGATAACAAACTGTAGT 465
Query 451 TTGCATTCTCCTTCACCGTCTTTAAGTGCAATGGTGATCAACAAATTCCACATGAGAAGC 510
|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 466 TTGCATTCGCCTTCACCGTCTCTAAGTGCAATGGTGATCAACAAATTCCATATGAGAAGC 525
Query 511 AATATCAAGAGCTTTAACCTGTCCGGGATGGGTTGTGCGGCTGGGATTCTATCAGT-AGG 569
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 526 AATATCAAGAGCTTTAACCTGTCTGGGATGGGTTGTGCGGCTGGGATTCTATCAGTCA-A 584
Query 570 TTTGGCTAATGACTTGCTAAAGGTTCACCAAGGCTCCTTGGCTCTTATTGTAAGCACTGA 629
|||||||||||| |||||| ||| ||||| |||||| |||||||||||||| ||||| ||
Sbjct 585 TTTGGCTAATGATTTGCTACAGGCTCACCGAGGCTCATTGGCTCTTATTGTTAGCACCGA 644
Query 630 AGCGCTGAACACACATTGGTACATTGGCAAAGACAGATCTATGCTTCTTACCAACTGTCT 689
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 645 AGCGCTGAACACACATTGGTACATTGGCAAAGACAGATCTATGCTTCTTACTAATTGTCT 704
Query 690 CTTCCGAATGGGAGCAGCTGCAGTACTGATGTCGAGCAATGATCATGACAGAGACAATGC 749
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 705 CTTCCGAATGGGAGCAGCTGCAGTTTTGATGTCTAGCAATGATCATGACAGAGACAATGC 764
Query 750 AAAGTATGAGCTCTTGCATGTTGTCAGGAAAAATAAAGCGAAAGATGATCAAGCTTACCG 809
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 765 AAAGTATGAGCTCTTGCATGTTGTTAGAAAAAATAAAGCGAAAGATGATCGAGCTTACCG 824
Query 810 ATGTATCTATCAAGACATAGACTCTGATGAAAAGCAAGGGGTGTCGATAACCAAAGATGT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 ATGTATCTATCAAGACATAGACTCTGATGAAAAGCAAGGGGTGTCGATAACCAAAGATGT 884
Query 870 AATCAGCGTTGCTGGAGATATGCTGAAGATGAATCTAACTTCTCTGGGACCTTTGGTATT 929
||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 885 AATCAGCGTTGCTGGGGATATGCTGAAGATGAATCTAACTTCACTGGGACCTCTGGTATT 944
Query 930 ACCTTACCTAGAGCAATTCCAATATGTGATACGACAGATTCTTTGCAAGAAACTAAAGAT 989
||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 945 ACCTTACTTAGAGCAATTCCAATATGTGATACAACACATTCTTTGCAAGAAACTAAAGAT 1004
Query 990 CTATGAGTCGAGTTCTTCTTATACACCAAACTTCAAGACAGCGTTTGAGCATTTCTGCAT 1049
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CTATGAGTCGAATTCTTCTTATACACCAAACTTCAAGACAGCGTTTGAGCATTTCTGCAT 1064
Query 1050 TCATACAGGAGGAAGAGCTGTTATTCAAGCAATGGAGATGAACCTG-AACTTGACAAAAG 1108
||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 1065 TCATACAGGAGGAAGAGCTGTAATTCAAGCAATGGAGATGAACCTGAAAC-TGACAAAAG 1123
Query 1109 TAGACATCGAGCCATCAAAGATGACTCTTCATAGGTTTGGGAATACTTCTTCGTCATCCA 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TAGACATCGAGCCATCAAAGATGACTCTTCATAGGTTTGGGAATACTTCTTCGTCATCCA 1183
Query 1169 TTTGGTACGCTCTCTCTTACTTGGAAGCAAAAAGGAGAATGAAAAAAGGCGATAGGGTCT 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TTTGGTACGCTCTCTCTTACTTGGAAGCAAAAAGGAGAATGAAAAAAGGCGATAGGGTCT 1243
Query 1229 TGCAGATTGCATTTGGAAGTGGGTTCAAGTGTAACAGTGCGGTGTGGAGATGCATCCGAG 1288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TGCAGATTGCATTTGGAAGTGGGTTCAAGTGTAACAGTGCGGTGTGGAGATGCATCCGAA 1303
Query 1289 AAGTGGAGCCCAATACAGAAAACAAATGGCTCGACTTTATCGACTCATATCCTGTAGACG 1348
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AAGTGGAGCCCAACACAGAAAACAAATGGCTCGACTTTATCGACTCATATCCTGTAGACG 1363
Query 1349 TACCTGACTCTACGAATATCAGAACAGGCTAG 1380
||||||||||||| ||||||||| ||||||||
Sbjct 1364 TACCTGACTCTACAAATATCAGACCAGGCTAG 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5