BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494976
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49120.1 | Symbols: | Protein of unknown function (DUF581) ... 819 0.0
> AT5G49120.1 | Symbols: | Protein of unknown function (DUF581)
| chr5:19908626-19909399 REVERSE LENGTH=694
Length=694
Score = 819 bits (443), Expect = 0.0
Identities = 520/556 (94%), Gaps = 10/556 (2%)
Strand=Plus/Plus
Query 93 AACAACAACAAC-AACACTCTCAACAGTGACGGTGGCTTAATTATTAGTCCTAAAGTCGT 151
|||||||||||| || || ||| ||||| |||| ||| | |||||||||||||||||
Sbjct 134 AACAACAACAACAAAAACCCTC-TTAGTGAAGGTGTCTT-A--ATTAGTCCTAAAGTCGT 189
Query 152 CAACAAAGCCAACGTTATCGTCACCACCACCGTGACGACGGACACGACTAATCTCCGTCG 211
||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 190 CAACAAAGCCAACATTATTGTCACCACCGCCGTGACGACGGACACGACTAATCTCCGTCG 249
Query 212 TTGTTATCAAGATTCTGGATTTCTCGAACATTGTTTTCTCTGTAGAAGAAAACTTCTTCC 271
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 250 TTGTTATCAAGATTCTGGATTTCTCGAACATTGTTTTCTCTGTAGACGAAAACTTCTTCC 309
Query 272 TGCGAAAGATATCTACATGTATAAAGGTGATAGAGCGTTTTGTAGCGTGGAGTGTAGATC 331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 AGCGAAAGATATCTACATGTATAAAGGTGATAGAGCGTTTTGTAGCGTGGAGTGTAGATC 369
Query 332 GAAGCAGATGATTATGGACGAAGAAGAAAGTTTGAGAAGAGAGTATTGTTCGTTAATGGA 391
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 370 GAAGCAGATGATTATGGACGAAGAAGAAAGCTTGAGAAGAGAGTATTGTTCTTTAATGGA 429
Query 392 TGTTAAGAAGAAGAAATCTGAATCTCCGGCGACGGCGCCGTCGCGTTACCGCCGAGATCC 451
||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 430 TGTTAAGAAGAAGAAATTTGATTCTCCGGCGACTGCGCCGTCGCGTTACCGTCGAGATCC 489
Query 452 GAGAAACCTAGCAGGCGGTTTCGCTTACTGAAGCAGAGAGAATCGCAAAGACTGAAAAAG 511
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 490 GAGAAACCAAGCAGGCGGTTTCGCTTACTGAAGCAGAGAGAATCGCAAAAACTGAAAAC- 548
Query 512 TTGTGTGGTT-TTGACTTTTTTACCCTTAGGCTAAGTTTTGTCGTTTTGTTTAATAACGT 570
|| ||| || |||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 549 TTATGTT-TTGTTGACTTTGTTACCCTTTGGCTAATTTTTGTCGTTTTGTTTAATAACGT 607
Query 571 GTAAAGCCGAGAGGGTGTTTTGGGTATTTCAGAGCttt-tttt-GCATATCTATGGGAGC 628
|||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 608 GTAAAGCCGAAAGGGTGTTTTGGGTATTTCAGAGCTTTCTTTTTGCATATCTATGGGAGC 667
Query 629 CCCTAGTAAAATATTT 644
||||||||||||||||
Sbjct 668 CCCTAGTAAAATATTT 683
Score = 150 bits (81), Expect = 1e-35
Identities = 100/108 (93%), Gaps = 6/108 (6%)
Strand=Plus/Plus
Query 1 CTTCTTTTCGCCATTAACACCTGAAAGAAATGAGATAAGAGAGAACAAAACCAAAAATAA 60
||||||||||| ||||||||||||||||||||||||| |||||||| | ||||| ||
Sbjct 15 CTTCTTTTCGCTATTAACACCTGAAAGAAATGAGATAGGAGAGAAC---A--AAAAA-AA 68
Query 61 TGGTGGGACTAAGTATTGTTTTGGAGATGACTAACAACAACAACAACA 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TGGTGGGACTAAGTATTGTTTTGGAGATGACTAACAACAACAACAACA 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31094936993
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5