BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494978
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1040 0.0
> AT5G49170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G06840.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:19938576-19939571 REVERSE LENGTH=910
Length=910
Score = 1040 bits (563), Expect = 0.0
Identities = 680/735 (93%), Gaps = 13/735 (2%)
Strand=Plus/Plus
Query 1 AAGAGGGTGAAGAAGCATTGAATCAACC-AAACACTAACACTAAAACACCTTTTCTCTTG 59
||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 AAGAGAGTGAAGAAGCATTGAATCAACCAAAACACTAACACTAGAACACCTTTTCTCTTG 60
Query 60 GAACACTCAAATACTAAACTCATTTCACCAATGTCTAACCAA-AACAAATCTCCTATTTT 118
|||||| ||| |||||| ||| ||||||||||||||| ||| | || |||||| |||||
Sbjct 61 AAACACT-AAAAACTAAAGTCACTTCACCAATGTCTAA-CAAGAGCATATCTCCAATTTT 118
Query 119 CCCAATGCTCCAATCTCAACATTTTAGCGATTATGGCTTCGATCCCCAGATCCACTACTT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 CCCAATGCTCCAATCTCAACATTTTAGCGATTATGGCTTCGATCCCCAGATCCATTACTT 178
Query 179 TCAGGTTTTGGAAGAAGCAAAGAAGCACAAGTCTTCTTCCATTGACACATTACAGTTCAA 238
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 179 TCAGGTTTTGGAAGAAGCAAAGAAACACAAGTCTTCCTCCATTGACACATTTCAGTTCAA 238
Query 239 GCTTCAAAAACCTATCTCGAAAGATGATTTGATCCGAACCACTCTCCACAAGAAGAACAA 298
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 239 ACTTCAAAAACCTATCTCGAAAGACGATTTGATCCGAACCACTCTCCACAACAAGAACAA 298
Query 299 GAACAAGAAGCGTTGGTTATGGTGCAAGAACGCTTTGTTCTTCTTGAAGTGGAGGAATTG 358
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 299 GAACAAGAAGCGTTGGTTATGGTGCAAGAACGCTTTGTTCTTCTTTAAGTGGCGGAAATG 358
Query 359 GCCAGTCT--TC-GCCGTCGTTGGACGATGCTCTGGCGAAAATGACGGAGACAATGAGTT 415
|||| ||| || |||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 359 GCCAATCTCCTCTGCCGTCGTTGGAAGATGCTCCGGCGAAAACGACGGAGACAATGAGTT 418
Query 416 CGACGATAGTAGTGATGTTCATATTGCTAGAGCTAGGAATTTTCGTGCCGGTTCGATATC 475
||||||| |||| ||||||||| ||||||||||||| |||||||| || |||||||||||
Sbjct 419 CGACGATCGTAGCGATGTTCATTTTGCTAGAGCTAGAAATTTTCGAGCTGGTTCGATATC 478
Query 476 GGGTCCGGTTTACGTGACGGAGAGCTGGAGCGGTTCGACTACACCGTACCGGCCGATGAC 535
||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 479 AGGTCCGGTTTACGTGACAGAGAGTTGGAGCGGTTCGAGTACACCATACCGGCCGATGAC 538
Query 536 GACGA-GATCGGCGGTTCAGTATTTGAGTCTACGGGAGCTTACTATGGAGCGACAACAGA 594
|||| | ||||| |||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 539 TACGACG-TCGGCAGTTCAGTATTTGAGTCTACGGGAGCTTAATATGGAGCGACAGCAGA 597
Query 595 GGATCACTACCACTTCTTCTATGTCCGGTCCTATTTACTTGGTCACGTGAATAAAAACAT 654
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 598 GGATCACTACCTCTTCTTCTATGTCCGGTCCAATTTACTTGGTCACGTGAATAAAAACAT 657
Query 655 CAATTTGCAGAATTATCCTTTTATAGGATCATAAAAGGAAAA-GATATTAA---GATTTG 710
||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||
Sbjct 658 CAATTTGCAGAATTATCCTTTTATAGGATCAAAAAAGGAAAAAGAAATTAATAAGATTTG 717
Query 711 TTTTGGGAGGTGTGG 725
|||||||||||||||
Sbjct 718 TTTTGGGAGGTGTGG 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5