BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494979
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49180.1 | Symbols: | Plant invertase/pectin methylesterase... 2615 0.0
AT3G49220.1 | Symbols: | Plant invertase/pectin methylesterase... 62.1 2e-08
> AT5G49180.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:19940678-19943007 REVERSE LENGTH=1952
Length=1952
Score = 2615 bits (1416), Expect = 0.0
Identities = 1757/1919 (92%), Gaps = 34/1919 (2%)
Strand=Plus/Plus
Query 1 TTAACTCCACTCTTCTCTCTCTTTCCTTCCTTCTAACCAAAACAGAGTCACAAGGGGCTC 60
|||| |||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 12 TTAAGTCCACTCTTCTCTCTC-AT--AT-CTTCTAACCAAAACAGAGTCACAAGGGGCTC 67
Query 61 -GAAGCCCCTCCAACTAAATTC--TTC--TT-TTAAATTG----TGAATCCACCAAACaa 110
|||||| ||||||||||||| ||| || || ||| ||||||||||| ||||
Sbjct 68 TTAAGCCCTTCCAACTAAATTCTTTTCTTTTGTTCTCTTGAAACTGAATCCACCAGACAA 127
Query 111 aaaaaTGGGGGTTGATAGTGAATTGAAAAAGAAGAAATGCATCATTGCTGGGGTTATCAC 170
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 128 AAAAATGGGGGTTGATGGTGAACTGAAAAAGAAGAAATGCATCATTGCTGGGGTTATCAC 187
Query 171 GGCCTTGCTCGTTATCATGGTTGTCGCTGTCGCCATCATAACATCAAGAAACACAAGTCA 230
|||||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||
Sbjct 188 AGCCTTGCTCGTTCTCATGGTTGTCGCTGTTGGCATCACAACATCAAGAAACACCAGTC- 246
Query 231 TAATTCAGACAAAATCGCCCCAGTGCAGATTAAAACAACCACAAATGCAGTCGAAGCAGT 290
||||||| ||||||| ||| ||||||||||||||| |||| | ||||| ||||||||
Sbjct 247 --ATTCAGAAAAAATCGTCCCTGTGCAGATTAAAACAGCCACCACGGCAGTTGAAGCAGT 304
Query 291 TTGTGCACCTACTGATTACAAAGAGACTTGTGTCAACAGTCTAATGAAAGCTTCTCCTGA 350
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 305 TTGTGCACCTACTGATTACAAAGAGACTTGTGTCAATAGTCTCATGAAAGCTTCTCCTGA 364
Query 351 CTCCACTCAGCCTCTTGACCTCATAAAGCTTGGCTTCAACGTCACTATTCGCTCCATTA- 409
||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||
Sbjct 365 CTCTACTCAGCCTCTTGATCTCATTAAGCTTGGCTTCAACGTCACCATTCGATCCA-TAG 423
Query 410 AAGATGGCATCAAGAAAGCTTCCGCT-GAGCTAAAAGCCAAGGCAGCCAACGATAACGAG 468
||||| |||||||||||||||||| | ||||| | |||||||||||| || || || ||
Sbjct 424 AAGATAGCATCAAGAAAGCTTCCG-TGGAGCTGACAGCCAAGGCAGCTAATGACAAGGAT 482
Query 469 ACCAAAGGGGCTTTGGAGTTGTGTGAGAAGCTTATGAATGATGCTACAGATGATCTGAAG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ACCAAAGGGGCTTTGGAGTTGTGTGAGAAGCTTATGAATGATGCTACAGATGATCTGAAG 542
Query 529 AAATGTCTTGATAACTTTGATGGGTTCTCAATTACTCAGATTGAGGACTTTGTCGAAGAT 588
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 AAGTGTCTTGATAACTTTGATGGGTTCTCAATTCCTCAGATTGAGGACTTTGTCGAAGAT 602
Query 589 CTTCGTGTATGGCTTAGTGGCTCCATTGCGTATCAACAAACATGCATGGATACTTTTGAG 648
|||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 603 CTTCGTGTTTGGCTTAGTGGCTCCATTGCTTATCAACAAACATGTATGGATACGTTTGAA 662
Query 649 GAAATTAAGTCGAACCTTTCACAAGACATGCATAAAATCTTTAAAACATCTAGAGAACTC 708
|||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 663 GAAACTAACTCGAAACTTTCACAAGACATGCAGAAAATCTTTAAAACATCTAGAGAACTC 722
Query 709 ACAAGTAATGGCCTTGCCATGATTACTAACATCTCTAACCTTCTCGGAGAGTTCAACATC 768
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 723 ACTAGTAATGGCCTTGCCATGATTACTAACATCTCTAACCTTCTCGGAGAGTTCAACGTC 782
Query 769 ACCGGATTAACCGGGGATCTCGG-AAACTACGCAAGAAAACTTTTATCAACGGAAGACGG 827
|| ||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||
Sbjct 783 ACAGGAGTAACCGGGGATCTCGGTAAA-TACGCAAGAAAACTTTTGTCGGCGGAAGACGG 841
Query 828 TATCCCAAGTTGGGTAGGACCAAACACTCGACAGCTCATGGCAACGAAAGGAGGTGTGAA 887
||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 842 TATACCAAGTTGGGTTGGACCAAACACTAGACGGCTCATGGCAACGAAAGGAGGTGTGAA 901
Query 888 AGCTAATGTGGTAGTGGCGCAAGACGGAAGCGGTCAGTACAAGACTATCAATGAGGCCTT 947
|||||| ||||| || || || |||||||| ||||||||||||||||||||||| |||||
Sbjct 902 AGCTAACGTGGTGGTTGCACACGACGGAAGTGGTCAGTACAAGACTATCAATGAAGCCTT 961
Query 948 GAATATTGTTCCTAAAGCCAACCAAAAGCCATTTGTTATCTATATTAAGCAAGGTGTCTA 1007
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 962 GAATGCAGTGCCTAAAGCCAACCAAAAGCCATTTGTTATCTACATTAAGCAAGGTGTCTA 1021
Query 1008 TAACGAGAAAGTTGACGTCACCAAGAAAATGACTCACGTCACTTTTATTGGTGATGGACC 1067
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1022 TAACGAGAAAGTTGACGTCACCAAGAAAATGACTCATGTCACTTTCATCGGTGATGGACC 1081
Query 1068 AACCAAAACGAAGATCACTGGTAGTCTCAACTTTTACATCGGCAAGGTCAAGACATACCA 1127
||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1082 AACCAAAACTAAGATCACTGGTAGTCTCAACTATTACATTGGCAAGGTCAAGACATACCT 1141
Query 1128 TACTGCCACTGTTGCGATCAATGGTGATCACTTCACGGCGAAGAACATCGGGTTTGAAAA 1187
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1142 TACTGCCACTGTTGCGATCAATGGTGATAACTTCACGGCGAAGAACATCGGGTTTGAAAA 1201
Query 1188 CACTGCCGGTCCCGAAGGACATCAAGCTGTGGCCCTAAGAGTATCGGGGGACTACGCCGT 1247
|||||| ||||||||||||||||||||||||||||||||||| |||| ||| | |||||
Sbjct 1202 CACTGCAGGTCCCGAAGGACATCAAGCTGTGGCCCTAAGAGTCTCGGCGGATTTGGCCGT 1261
Query 1248 TTTCTACAACTGCCAAATCGATGGTTACCAAGACACACTCTACGTCCATTCTCATCGTCA 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CTTCTACAACTGCCAAATCGATGGTTACCAAGACACACTCTACGTCCATTCTCATCGTCA 1321
Query 1308 GTTCTTCCGTGATTGCACAATCTCGGGCACCGTTGACTTCATCTTCGGCGATGCAAAAGT 1367
||||||||||| |||||| |||||||||||||||||||||| |||||||||| | |||
Sbjct 1322 ATTCTTCCGTGACTGCACAGTCTCGGGCACCGTTGACTTCATTTTCGGCGATGGTATAGT 1381
Query 1368 TGTCTTACAAAACTGCAACATTGTAGTGAGAAAACCCATGAAAGGTCAGTCTTGCATGAT 1427
|||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1382 AGTCTTACAAAACTGTAACATTGTTGTGAGAAAACCCATGAAAAGTCAGTCTTGCATGAT 1441
Query 1428 CACAGCCCAAGGCCGGACCGATGTACGTGAATCCAGCGGACTCGTGCTACAAAACTGCCA 1487
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1442 CACAGCCCAAGGCCGCTCCGATAAACGTGAATCCACCGGACTCGTGCTACAAAACTGCCA 1501
Query 1488 CATTACCGGAGAACCGGCGTACCTTCCCGTAAAATCTATAAACAAAGCATATCTTGGAAG 1547
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1502 TATTACCGGAGAACCAGCGTATATTCCCGTAAAATCTATAAACAAAGCATATCTTGGAAG 1561
Query 1548 GCCATGGAAAGAGTTCTCAAGAACCATAATAATGGGAACGACCATAGACAACATTATTGA 1607
||||||||||||||| ||||||||||| ||||||||||| ||||||||| || |||||||
Sbjct 1562 GCCATGGAAAGAGTTTTCAAGAACCATTATAATGGGAACAACCATAGACGACGTTATTGA 1621
Query 1608 TCCAGCGGGATGGCTTCCTTGGAATGGTGATTTTGCACTCAACACACTTTATTATGCTGA 1667
||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct 1622 TCCAGCGGGATGGCTTCCTTGGAATGGTGATTTTGCACTTAATACGCTTTACTATGCTGA 1681
Query 1668 GTATGAGAATAATGGGCCTGGGTCAGACCAAGCCCAACGTGTTAAGTGGCCTGGAATTAA 1727
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1682 GTATGAGAATAATGGGCCTGGGTCAAACCAAGCCCAACGTGTTAAGTGGCCTGGAATTAA 1741
Query 1728 GAAGATT-TCACCTAAGCAAGCTCGTCGATTTACTCCAGCTAGGTTTTTACGTGGTAACT 1786
||| | | || || |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1742 GAA-ACTATCGCCCAAGCAAGCTCTTCGATTTACTCCTGCTAGGTTTTTACGTGGTAACT 1800
Query 1787 TGTGGATTCCACCAAATCGTGTGCCTTACATGGGGAATTTGCAGTAGATTCCAATTGGTG 1846
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1801 TGTGGATTCCACCAAATCGTGTGCCTTACATGGGGAATTTTCAGTAGATTCCAATTGGTG 1860
Query 1847 AATTTTCTTTTTCCACTTTCTATGTTCTCTCTaaaaaaaaaaaaaTTGAAGGTGAATAA 1905
||||||| | ||||||| ||| |||| |||||||||||| | ||||||||||||
Sbjct 1861 AATTTTC-----C-ACTTTCTGTGTGCTCTTTAAAAAAAAAAA--T-GAAGGTGAATAA 1910
> AT3G49220.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:18249776-18253839 FORWARD LENGTH=2053
Length=2053
Score = 62.1 bits (33), Expect = 2e-08
Identities = 47/54 (87%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1270 GGTTACCAAGACACACTCTACGTCCATTCTCATCGTCAGTTCTTCCGTGATTGC 1323
||||||||||||||||||||||||||||| | || || ||||| ||||| |||
Sbjct 1292 GGTTACCAAGACACACTCTACGTCCATTCAAACCGCCAATTCTTTCGTGAATGC 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5