BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494981

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22055.1 | Symbols: RALFL15 | RALF-like 15 | chr2:9379578-93...   311    3e-84
  AT1G61566.1 | Symbols: RALFL9 | ralf-like 9 | chr1:22717060-227...   257    4e-68
  AT1G61563.1 | Symbols: RALFL8 | ralf-like 8 | chr1:22714921-227...   254    5e-67


> AT2G22055.1 | Symbols: RALFL15 | RALF-like 15 | chr2:9379578-9379817 
FORWARD LENGTH=240
Length=240

 Score =  311 bits (168),  Expect = 3e-84
 Identities = 196/210 (93%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGATGTCAAAAAGTATCAAGGTTATTCTATCTCTTGCTCTCGTACTGTTTTTGGCA  60
            |||||||||||||||||||||||||||||| |||||||||||||| || | |||||||| 
Sbjct  1    ATGGGGATGTCAAAAAGTATCAAGGTTATTGTATCTCTTGCTCTCATATTATTTTTGGCC  60

Query  61   CTTGCAACAACCAAGGTTGAGGCCACAAGATACATAAGTTATCGTGGTATTAATCATGGA  120
            |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  61   CTTGCAGCAACCAAGGTTGAAGCCACAAGATACATAAGTTATCGTGGTATGAATCATGGA  120

Query  121  GATCATGCTATACATTGTGACAAAGCCCACCCTAATACATGCAAGAAGCAAGAAGCAAAT  180
            ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct  121  GATCATGCTATACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGCAAGTAGCAAAT  180

Query  181  CCTTACAGGAGAGGATGCGGGACGCTCGAA  210
            |||||||||||||||||||| ||  |||||
Sbjct  181  CCTTACAGGAGAGGATGCGGAACAATCGAA  210


> AT1G61566.1 | Symbols: RALFL9 | ralf-like 9 | chr1:22717060-22717610 
REVERSE LENGTH=551
Length=551

 Score =  257 bits (139),  Expect = 4e-68
 Identities = 181/201 (90%), Gaps = 4/201 (2%)
 Strand=Plus/Plus

Query  1    ATGGGGATGTCAAAAAGTATCAAGGTTATTC-TATCTCTTGCTCTCGTACTGTTTTTGGC  59
            ||||||||||| |||||||||||||||| || ||||||||||||||||| |||| |||||
Sbjct  119  ATGGGGATGTCTAAAAGTATCAAGGTTA-TCTTATCTCTTGCTCTCGTAGTGTTCTTGGC  177

Query  60   ACTTGCAACAACCAAGGTTGAGGCCACAAGATACATAAGTTATCGTGGTATTAATCATGG  119
             |||||  |||||||||||||||||||||||||||||| ||||| || |||  ||| |||
Sbjct  178  CCTTGCTGCAACCAAGGTTGAGGCCACAAGATACATAACTTATCCTGCTATCGATCGTGG  237

Query  120  AGATCATGCTATACATTGTGACAAAGCCCACCCTAATACATGCAAGAAGCAAGAAGCAAA  179
            |||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct  238  AGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGAAAGAAGCAAA  297

Query  180  TCCTTAC-AGGAGAGGATGCG  199
            ||||||| || ||||||||||
Sbjct  298  TCCTTACCAG-AGAGGATGCG  317


> AT1G61563.1 | Symbols: RALFL8 | ralf-like 8 | chr1:22714921-22715448 
REVERSE LENGTH=528
Length=528

 Score =  254 bits (137),  Expect = 5e-67
 Identities = 190/215 (88%), Gaps = 5/215 (2%)
 Strand=Plus/Plus

Query  1    ATGGGGATGTCAAAAAGTATCAAGGTTATTCTATCTCTTGCTCTCGTACTGTTTTTGGCA  60
            ||||||||||| ||||||||||||||||| |||||||||||||| ||| |||| ||||||
Sbjct  120  ATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTGCTCTTGTAGTGTTCTTGGCA  179

Query  61   CTTGCAACAACCAAGGTTGAGGCC-AC--AAGATACATAAGTTATCGTGGTATTAATCAT  117
            ||||||  ||||||||||||||||  |  ||||||||||| ||||| || |||  ||| |
Sbjct  180  CTTGCAGGAACCAAGGTTGAGGCCTCCGTAAGATACATAACTTATCCTGCTATCGATCGT  239

Query  118  GGAGATCATGCTATACATTGTGACAAAGCCCACCCTAATACATGCAAGAAGCAAGAAGCA  177
            |||||||||||| ||||||||||||||||||||||||| || ||||||||| || |||||
Sbjct  240  GGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGAAACAAGCA  299

Query  178  AATCCTTACAGGAGAGGATGCGG-GACGCTCGAAG  211
            ||||||||||||||||||||||| |  ||||||||
Sbjct  300  AATCCTTACAGGAGAGGATGCGGAGT-GCTCGAAG  333


 Score =  106 bits (57),  Expect = 2e-22
 Identities = 87/100 (87%), Gaps = 8/100 (8%)
 Strand=Plus/Plus

Query  248  TTATTTATATACACACTTTACATCCTCATATTCA----TT--TTTGGCTTTGTAATTGAT  301
            |||||| ||||||| |||||||||||||||||||    ||  ||||||||||||||||||
Sbjct  418  TTATTTGTATACACTCTTTACATCCTCATATTCATCTGTTAATTTGGCTTTGTAATTGAT  477

Query  302  TGTAATCACAT-GATGTTATGATCAATCATAAATATATAT  340
            ||||||||||| | ||||||| ||||||||| ||| ||||
Sbjct  478  TGTAATCACATCG-TGTTATGGTCAATCATATATAAATAT  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15934876433


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5