BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494982

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36925.1 | Symbols:  | unknown protein; Has 69 Blast hits to...   750    0.0  


> AT1G36925.1 | Symbols:  | unknown protein; Has 69 Blast hits 
to 69 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa 
- 45; Fungi - 4; Plants - 8; Viruses - 0; Other Eukaryotes 
- 10 (source: NCBI BLink). | chr1:13986436-13987289 FORWARD 
LENGTH=525
Length=525

 Score =  750 bits (406),  Expect = 0.0
 Identities = 459/485 (95%), Gaps = 1/485 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCAGGATACAGAAAACATT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  40   ATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCAGGATAAAGAAAACGTT  99

Query  61   CCTCCTAATTCTGAAGCTAACCCCATATCACCAATGCAACCAAACAGAGTTTCACCTAAT  120
            ||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  100  CCTCCTAGTTCTGAAGCTAACTCCATATCACCAATGCAACCAAAGAGAGTTTCACCTAAT  159

Query  121  AGCTTGAGTGATATTACAAATGAATGTGAATCTCCAAGGATGAAACGAATGCGTATTATA  180
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||
Sbjct  160  AGCTTGAGTGATATTACAAATGAATGTGAATCTCCAAGGATAAAACGGATGTGTGTTATA  219

Query  181  AAGGAGACGAAAGATAAAAGAAAGAAAGGAGAATCATCTCCAAGTACTAACTTGGACCAA  240
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  220  AAGGAGACTAAAGAGAAAAGAAAGAAAGGAGAATCATCTCCAAGTACTAACTTGGACCAA  279

Query  241  AACTTGGACGAGACGACACAGAACGGCAAGAGCAATGGCAATGGATTTCCATGTACTGCA  300
            || ||||||||||||||||||||||||||| |||| |||||  |||||||||||||||||
Sbjct  280  AAGTTGGACGAGACGACACAGAACGGCAAGGGCAAGGGCAACAGATTTCCATGTACTGCA  339

Query  301  GCAAGTAGGAGGAAAACAAACGTGCATAAGGAACCATATATGCAAGAATCAAGACATGAT  360
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  340  ACAAGTAGAAGGAAAACAAACGTGCATAAGGAACCATATATGCAAGAATCAAGACAAGAT  399

Query  361  AATCACAAAGAAGCTCCATCTAAAGACCATGCATCATCCTCACGTTCACATAATTCACTA  420
            ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  400  AATTACAAAGAAGCTCCATCTAAAGACCATGCATCATCGTCACGTTCACATAATTCACTA  459

Query  421  TATAACTCTGAAGAGTATGATGACAATGGGGATGCAATCTACAACTGTGAACACTGTGGA  480
            |||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  460  TATAACACTGACGAGTATGATGACAATGGGGATGCA-TCTACAACTGTGAACATTGTGGA  518

Query  481  GCTTT  485
            |||||
Sbjct  519  GCTTT  523



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23107707620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5