BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494984
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49215.1 | Symbols: | Pectin lyase-like superfamily protein... 2313 0.0
AT3G06770.2 | Symbols: | Pectin lyase-like superfamily protein... 91.6 2e-17
> AT5G49215.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19953487-19956116 FORWARD LENGTH=1775
Length=1775
Score = 2313 bits (1252), Expect = 0.0
Identities = 1463/1562 (94%), Gaps = 26/1562 (2%)
Strand=Plus/Plus
Query 1 CTTGTCTGTGTTGTTCTCTGTGGTCAttcttctttc-tttcacttcttcttcttcgctct 59
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 19 CTTCTCTGTGTTGTTCTCTGTGGTCATTCTTCTTTCTTTTCACTTCTTCTTCTT--CT-T 75
Query 60 c-cttctcctttctcAGTGTCGGGTTCCATTTGGCGCGAAAAGTTCTTCACtttttccag 118
| | ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CGC-TCTTC-TTCTCACTGTCGGGTTCCATTTGGCGCGAAAAGTTCTTCACTTTTTCCAG 133
Query 119 cttttttttgttctctgaca-tctttttttttt-ttt--ttACAAATAAAGATGCC---- 170
|||||||||||||||||||| | |||||||||| ||| |||||||||||||||||
Sbjct 134 CTTTTTTTTGTTCTCTGACAGT-TTTTTTTTTTGTTTGGTTACAAATAAAGATGCCAGTA 192
Query 171 A--GTGGCACTAGTTTTGCTGTTGACATTGAGCAGTGTGATTCTGATTAATGGGAGAAGT 228
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AGTGTGGCACTAGTTTTGCTGTTGACATTGAGCAGTGTGATTCTGATTAATGGGAGAAGT 252
Query 229 TACGGCGTCGGAAACGTATGCGATCTTGGTCGGAGACCGAACGAGAGACCACACAGTGTC 288
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 253 TACGGCGTCGGAAACATATGCGATCGTGGTCGGAGACCGAGCGAGAGACCACACAGTGTC 312
Query 289 AAAATCACTGATTTTGGAGCTGTGGGAGATGGTGAAA-CGTTGAACACACTTGCGTTTCA 347
||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct 313 AAAATCACTGATTTTGGTGCTGTGGGAGATGG-GAAAACGTTGAACACACTTGCGTTTCA 371
Query 348 GAATGCTGTCTTCTATCTTAACTCTTTTGCTGATAAAGGTGGTGCTCAGCTTTATGTCCC 407
||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 372 AAATGCTGTCTTTTATCTAAAGTCTTTCGCTGATAAAGGTGGTGCTCAGCTTTATGTTCC 431
Query 408 TCCGGGACGGTGGCTCACCGGAAGTTTCAATCTCACCAGTCATCTCACTCTCTTTCTCGA 467
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 432 TCCGGGACGGTGGCTCACCGGAAGTTTCAACCTCACCAGTCATCTCACTCTCTTTCTCGA 491
Query 468 GAAAGACGCCGTCATACTTGCCTCACAGGATCCATCACATTGGCAAGT-AGCGGATGCTT 526
|||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |
Sbjct 492 GAAAGACGCCGTCATACTTGCCTCACAGGATCCATCGCATTGGCAAGTCA-CGGATGCCT 550
Query 527 TACCATCATATGGGCGGGGTATTGATCTACCAGGGAAGAGATACATGAGTTTGATAAACG 586
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TACCGTCATATGGGCGGGGTATTGATCTACCAGGGAAGAGATACATGAGTTTGATAAACG 610
Query 587 GTGACACGCTACATGATGTAGTAGTAACAGGGGATAACGGTACTATAGATGGGCAAGGCC 646
|||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 611 GTGACATGCTACATGATGTAGTAGTAACAGGTGATAACGGTACCATAGATGGGCAAGGCC 670
Query 647 TTGTTTGGTGGGATCGTTTTAATTCTCATTCTTTAGAGTACAGTCGCCCTCACCTTGTTG 706
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 671 TTGTTTGGTGGGATCGGTTTAATTCTCATTCTTTAGAGTACAGTCGCCCTCACCTTGTCG 730
Query 707 AGTTTGTCTCTTCCGGAAATGTCATTGTCTCAAATCTTACGTTCTTGAATGCTCCGGCTT 766
||||||||||| ||| |||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 731 AGTTTGTCTCTGCCGAAAATGTCATTGTATCAAATCTTACATTCTTGAACGCTCCGGCTT 790
Query 767 ATACTATCCATTCGGTTTATTGTAGCAATTTATACATTCATAGAGTAACAGCTAATACTT 826
||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 791 ATACTATCCATTCAGTTTATTGTCGCAATTTATACATTCATAGAGTAACGGCTAATACTT 850
Query 827 CTCCAGAATCTCCTTATACCATCGGCATTGTCCCGGATTCTTCTGAAAATGTGTGTATCC 886
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 851 GTCCAGAATCTCCTTATACCATCGGTATTGTCCCAGATTCTTCTGAAAATGTGTGTATCC 910
Query 887 AAGATTCTAGTATCAACATGGGGTATGATGCCATTTCTCTTAAAAGTGGTTGGGACGAAT 946
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 911 AAGAATCTAGTATCAACATGGGGTATGATGCCATTTCTCTTAAAAGTGGTTGTGATGAAT 970
Query 947 ACGGTATT-TCGTATGCAAGACCTACTGCAAATGTCCAGATAAGAAATGTTTACCTCGGA 1005
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 971 ACGGT-TTATCGTATGCAAGACCTACTGCTAATGTCCAGATAAGAAATGTTTACCTTAGA 1029
Query 1006 GCAGCTTCTGGTTCATCCATTTCCTTCGGTAGTGAAATGTCTGGTGGCATATCTGATGTC 1065
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1030 GCAGCTTCTGGTTCCTCCATTTCCTTTGGTAGTGAAATGTCTGGTGGTATATCTGATGTT 1089
Query 1066 AAGGTTAGTGATGCTCACATACACAACTCGTTATCCGGGATTTCCTTTAGAACAACAAAC 1125
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1090 GAGGTCAGTGATGCTCACATACACAACTCGTTATCCGGGATTGCCTTTAGAACAACAAAT 1149
Query 1126 GGAAGAGGCGGTTACATTAAAGAGATCGATATTTCCAACATCCATATGGTTAATGTTCGT 1185
|||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1150 GGAAGAGGTGGTTATATTAAGGAGATTGATATTTCCAACATCCATATGGTTAATGTTGGT 1209
Query 1186 ACTGCGTTTCTAGCCAATGGTAGCTTCGGTACTCATCCGGATTCTGGTTTCGACGCTAAT 1245
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1210 ACTGCATTTCTAGCCAACGGTAGCTTCGGTACTCATCCGGATTCTGGTTTCGATGAAAAT 1269
Query 1246 GCTTTCCCGCTTGTGAGTCACATCAGATTACATGACATTGCTGGAGAAAACATAAGCACC 1305
|||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1270 GCTTACCCGCTTGTGAGTCACATCAGGTTACATGACATTGTTGGAGAAAACATAAGCACT 1329
Query 1306 GCCGGATATTTCTTTGGAACCGAA-GAGTCTCCTTTCACTTCGATTTTCTTATCGAATAT 1364
|| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 1330 GCTGGATATTTCTTTGGAAC-GAAAGAGTCTCCTTTCACTTCGATTTTGTTATCGAATAT 1388
Query 1365 CTCTCTGTCGATTAAAAACTCCGATTCTCCTGCTGATTCTTGGCAATGCTCATATGTTGA 1424
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 1389 CTCTCTGTCGATTAAAAACTCGGCTTCCCCTGCTGATTCTTGGCAATGCTCATATGTTGA 1448
Query 1425 CGGTTCTTCAGAATCCGTAGTCCCTGAACCGTGCCCCGAGCTGAAGAGTTTTGATAGTTC 1484
||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1449 CGGGTCTTCGGAATTCGTAGTCCCTGAACCGTGCCTTGAGCTGAAGAGTTTTGATAGTTA 1508
Query 1485 CTATGGTAGAGCTGAGGCCTTATGAAACCAAACTTCATTAGAAATGATGATTCATATTTG 1544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1509 CTATGGTAGAGCTGAGGCCTTATGAAACCAAACTTCATTAGGAATGATGATTCATATTTG 1568
Query 1545 TT 1546
||
Sbjct 1569 TT 1570
Score = 161 bits (87), Expect = 2e-38
Identities = 87/87 (100%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1589 TTGTTGTCCCTGTTATTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTT 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TTGTTGTCCCTGTTATTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTT 1716
Query 1649 CATTCATGTGTAACCAAAGAAATTTTG 1675
|||||||||||||||||||||||||||
Sbjct 1717 CATTCATGTGTAACCAAAGAAATTTTG 1743
> AT3G06770.2 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2134800-2137228 REVERSE LENGTH=1855
Length=1855
Score = 91.6 bits (49), Expect = 2e-17
Identities = 68/77 (88%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1599 TGTTATTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTTCATTCATGTG 1658
|||| |||||| || ||||| ||| | ||| ||||||||||||||||||||||||||||
Sbjct 1726 TGTTGTTTGCATATTCTGAGA-TAAGAAATC-TGTACAGGTTCATTTCTTCATTCATGTG 1783
Query 1659 TAACCAAAGAAATTTTG 1675
||| |||||||||||||
Sbjct 1784 TAAACAAAGAAATTTTG 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5