BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494985
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49220.1 | Symbols: | Protein of unknown function (DUF789) ... 2420 0.0
> AT5G49220.1 | Symbols: | Protein of unknown function (DUF789)
| chr5:19956437-19958833 FORWARD LENGTH=1800
Length=1800
Score = 2420 bits (1310), Expect = 0.0
Identities = 1615/1752 (92%), Gaps = 62/1752 (4%)
Strand=Plus/Plus
Query 1 TTTACTCTCTTCTCTTCTTTATTTTTTCTGGGGAGAAAGAAATTTCACtttttttt-tcc 59
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 72 TTTAGTCTCTTCTCTTCTTTATTTTTTCTGGGGAGAAAGAAATTTCACTTTTTTTTATCC 131
Query 60 gattt-tgcttcatctgggttttggatttttgcgatcgattttgA-AAATTAGCAAACAA 117
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 132 GATTTCTGCTTCATCTGGGTTTTGGATTTTTGCGATCGATTTTGAGAAATTAGCAAACAA 191
Query 118 TGTCGGGTTCTGGAGGAGTTTCCATCGCACGAACAGCGATCCGTGGTGAGAATCGGTTTT 177
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 192 TGTCGGGTTCTGGAGGAGTTTCAATCGCACGTACAGCGATCCGTGGTGAGAATCGGTTTT 251
Query 178 ATAATCCACCTCCGATGCGAAGGATGCAGCAAGAGGCGCAATTGCAGCAACAGATTAGGG 237
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 252 ATAATCCACCTCCGATGCGTAGGATGCAGCAAGAGGCCCAATTGCAGCAACAGATTAGGG 311
Query 238 AGAAGCAACGTCGTGATGATGAAGAAGAAG-AGCGA-AGA-AAGG--CTGAGACTGTTG- 291
||||||||||||||||||||||||| || | || || |||| |||| | |
Sbjct 312 AGAAGCAACGTCGTGATGATGAAGATGAGGTTTTGATGGATAAGGAAAGGAGAAAG--GC 369
Query 292 TGGCTA-TGCCTCCTCCGAGG---ACTAGGAAAGGTCTTGGTGTGTCGGAGAGTAAGAAT 347
| |||| || | |||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 370 T-GCTACTG-TTGCTCCGAGGACTACTAGGAAAGGTCTTGGTGTGTCGGAGAGTAAGAGT 427
Query 348 CGGGTT-TTGGTTTCTGGTTCGGAAGTTTATGCCGGTTCTTCTGATTCTTCTTCCGGGTC 406
|||||| || ||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 428 CGGGTTGTT-GTTTCGGGTTCGGAAGTATGTGCCGGTTCTTCTGATTCTTCTTCCGGGTC 486
Query 407 GGGTCGGGTTCTTAGTGATGGGTCTAACTTGGATCGGTTCTTGGAGCATACTACTCCTGT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GGGTCGGGTTCTTAGTGATGGGTCTAACTTGGATCGGTTCTTGGAGCATACTACTCCTGT 546
Query 467 TGTTCCTGCCCGTTTATTTCCCATGAGGAGCAGGTGGGAACTTAAAAACCGCGAATCGGA 526
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 547 TGTTCCTGCTCGTTTATTTCCCATGAGGAGCAGGTGGGAACTTAAAACCCGTGAATCGGA 606
Query 527 TTGCCATACGTATTTTGTTTTGGAGGATCTTTGGGAGTCGTTTGCAGAATGGAGTGCATA 586
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 607 TTGCCATACGTATTTTGTTTTGGAGGATCTTTGGGAGTCATTTGCTGAATGGAGTGCATA 666
Query 587 CGGTGCTGGTGTTCCTCTAGAAATGCATCCTCTAGAAATGTATGGGAGTGACTCCACCGT 646
|||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||| ||
Sbjct 667 CGGTGCTGGTGTTCCTTTAGAGATGCATCCTCTAGAAATGCATGGGAATGACTCCACTGT 726
Query 647 GCAGTATTATGTGCCGTACTTATCTGGTATTCAGTTGTATGTGGATCCATCGAAGAAGCC 706
||||||||||||||| |||||||| ||||||||||||||||| ||||| | |||||||||
Sbjct 727 GCAGTATTATGTGCCTTACTTATCCGGTATTCAGTTGTATGTTGATCCGTTGAAGAAGCC 786
Query 707 TAGGAACCCAGTTGAAGATAATGAAGGAAGTAGTGAAGGAAGCAGCAACAGTAAGGTCGA 766
|| ||| | | || | || | | | || ||||||||| || | || |
Sbjct 787 TA-GAA---A--TCCAG-T--TGGA-G-A-TAATGAAGGAAGTAG----TG-AA----G- 824
Query 767 GAAGTTACCTAATCATGCTAAGAATTTGCCGAATGCGGTGGACTTGAGTGTCAGTGAACT 826
|||| | | || || | || || |||| | ||||||||||||||||| |||||||
Sbjct 825 GAAG-CAGC-AA-CA-G-TAGGACTTTG-C-----CGGTGGACTTGAGTGTCGGTGAACT 873
Query 827 GAATAGAATTAGTCTGAGAGATCAATCTATTGCTGGCTCATTGTCTAGTGGAGAAACTGA 886
||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 874 GAATAGAATTAGTCTGAAAGATCAATCTATTACTGGCTCGTTGTCTAGTGGAGAAGCTGA 933
Query 887 GATCAGCGATCCGCAGGGACGATTACTATTCGAGTACTTGGAGTATGAACCTCCGTTTGG 946
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 934 GATCAGCAATCCGCAGGGACGATTACTATTCGAGTACTTGGAGTATGAACCTCCATTTGG 993
Query 947 CCGGGAACCTCTGGCTAACAAAGTCTCGGATCTGGCGTCAAGATTTCCTGAGCTAATGAC 1006
| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 994 CAGGGAACCTCTGGCTAACAAAATCTCGGATCTCGCGTCAAGAGTTCCTGAGCTAATGAC 1053
Query 1007 ATACCGGAGCTGTGATCTTCTTCCTTCAAGTTGGGTCTCTGTGTCATGGTATCCAATATA 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 ATACCGGAGCTGTGATCTTCTTCCTTCAAGTTGGGTCTCTGTGTCATGGTATCCAATATA 1113
Query 1067 CAGAATACCGGTTGGTCCAACACTACAAAATCTCGATGCCTGCTTTCTAACTTTTCACTC 1126
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1114 CAGAATACCGGTTGGTCCAACACTACAAAATCTTGATGCCTGCTTTCTAACTTTTCACTC 1173
Query 1127 TCTCTCAACAGCACCTCCTCAAAGTGCTATGGGTTGTAGTGATTCGGAACCATCCACAAA 1186
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1174 TCTCTCAACAGCACCTCCTCAAAGTGCTATGGGTTGTAGTGATTCACAACCATCCACAAA 1233
Query 1187 GCTACCGTTGCCTACTTTTGGACTCGCATCTTATAAGCTGAAAGTATCTGTGTGGAACCA 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GCTACCGTTGCCTACTTTTGGACTCGCATCTTATAAGCTGAAAGTATCTGTGTGGAACCA 1293
Query 1247 AAATAGAACTCAAGAGTCGCAAAAGATCACTTCTTTACTACAAGCTGCAGATAAATGGCT 1306
|||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 1294 AAATAGAATTCAAGAGTCCCAAAAGATGACTTCTTTGCTACAAGCTGCAGATAAATGGCT 1353
Query 1307 CAAGCGTCTGCAAGTTGATCATCCAGACTACAGATTCTTCACCTCTAACAGCCCACAAAT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1354 CAAGCGTCTGCAAGTTGATCATCCAGACTACAGATTCTTCACCTCTAACAGTCCACAAAT 1413
Query 1367 GAGGTGAAAATGAAAGATACTTTCTTGACCATCGATTTGGCTCTGGTCTGATCTAAAGAC 1426
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1414 GAGGTGAAAATGAAAGATACATTCTTGACCATGGATTTGGCTCTGGTCTGATCAAAAGAC 1473
Query 1427 CCATTATCTGCTGCTCTTACTTCACACATAAAGTCTCTCTCTCTTACACTGAAGAACCAC 1486
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1474 CCATTATCTGCTGCTCTTACTTCACATATAAAGTCTCTCT-T---ACACTGAAGAACCAC 1529
Query 1487 CAAATAGTGGCCAGACTCTTGCGTGTTTTTCAGGCGATTTAAGAGTCTCTGCTGTTTCGT 1546
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 CAAATAGTGGTTAGACTCTTGCGTGTTTTTCAGGCGATTTAAGAGTCTCTGCTGTTTCGT 1589
Query 1547 TTCCAGAAGATGCTTTGTGAATTGTAGCCTAATCTTCCT-TTT-T-CTTCTGAAACTTAG 1603
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1590 TTCCAGAAGATGCTTTGTGAATTGTAGCCTAATCTTCCTCTTTCTTCTTCTGAAACTTAG 1649
Query 1604 TCTTTTGCTTTTCCCTGAATAAGTATTTGAGGAGCCCATATAGTGAAATTTGCGAGGAGT 1663
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1650 TCTTTTGATTTTCCCTGAATAAGGATTTGAGGAGCCCATATAGTGAAATTTGCGAGGAGT 1709
Query 1664 GTTTTTGTAATGTTGAGATGCAACACTTTTTGTGATACAATTTGATTACTGAACTGA--A 1721
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1710 GTTTTTGTAATGTTGAGATGCAACACTTTTTGTGATACAATTTGATTGCTGAACTGATGA 1769
Query 1722 A-CACAGGTTTG 1732
| |||||| |||
Sbjct 1770 AACACAGGGTTG 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85642129770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5