BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494988
Length=2140
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49270.1 | Symbols: SHV2, DER9, MRH4, COBL9 | COBRA-like ext... 3286 0.0
> AT5G49270.1 | Symbols: SHV2, DER9, MRH4, COBL9 | COBRA-like extracellular
glycosyl-phosphatidyl inositol-anchored protein
family | chr5:19971909-19974444 REVERSE LENGTH=2150
Length=2150
Score = 3286 bits (1779), Expect = 0.0
Identities = 2028/2149 (94%), Gaps = 13/2149 (1%)
Strand=Plus/Plus
Query 2 TTCTTTCTCCAAGTAAACCTAACTTTCTTTGGAGAACGACACAATGGGCTTTCTCCTTCC 61
|||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 4 TTCTTTCTCCAAGTAAACTTAACTTTCTCTGGAGAAAGACACAATGGGCGTTCTCCTTCC 63
Query 62 GATTTTATTCGGAGTGTTACTCTTATTAACCGTTACTCCACCGTCTATGTCTCAGCTTCC 121
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 64 GATATTCTTCGGAGTGTTACTCTTATTCACCGTTACTCCACCGTCTATGTCTCAGCTTCC 123
Query 122 TCCAACAAT-A---AT--GGCTCCGGCACCGGCCCCGACTTCGCCATCAGATCTTTGCAA 175
||| ||||| | | ||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 124 TCCGACAATCATGGTTCCGGCACCGGCACCGGCCCCGATTTCTCCATCAGATCTTTGCAA 183
Query 176 TGGAATATTTCTCTCTTATGAATTCATACTCGGTCGCAAGATCCCTCCAAACGACACAAC 235
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 184 CGGAATATTTCTCTCTTATGATTTCATACTCGGTCGCAAGATCCCTCCGAACGACACAGC 243
Query 236 CGATCAGCCTTATCGGTTTGAGTCTGTCCTTACGGTTCTAAACAATGGCCGGGAAGAGCT 295
|||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||| |
Sbjct 244 CGATCAGCCTTATCGGTTCGAGTCAGTTCTTACGGTTCTAAACAATGGCCGTGAAGAGTT 303
Query 296 AAAAGAATGGAGAGTTTTTGTTGGATTCCAACACAACGAAATCCTTATTTCCGCCACCGA 355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 304 AAAAGAATGGAGAGTGTTTGTTGGATTCCAACACAACGAAATCCTTATTTCCGCCACAGA 363
Query 356 TGCATTAATAGTCAACGGGACGGAGCTTCCTGCTTTGGTAGGAAATGGTACCATCCTCGG 415
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 364 TGCGTTAATAGTCAACGGGACAGAGCTTCCTGCTTTGGTAGGAAATGGTACCATCTTCGG 423
Query 416 TGGCTATCCGGTCTCCGACCTCAAAACGGCTATTCAAACGGCCGGAGACTTGAAGCAAAT 475
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TGGCTATCCTGTCTCCGACCTCAAAACGGCTATTCAAACGGCCGGAGACTTGAAGCAAAT 483
Query 476 GACGGCTGAGATCGAACTTGTCGGGACTCAGTTCATGGTGGCCCCTCCGGCGATTCCTTT 535
|||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 484 GACGGCTGAGATTGAGCTTGTCGGGACTCAGTTCATGGTGGCTCCTCCGGCGGTTCCTTT 543
Query 536 GCCGTCCAACATATCGCTTGTTAACGATGGTTGGCTCTGTCCTGAGCCTACTCTTCAAAG 595
||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 544 GCCATCCAACATATCGCTTGTTAACGAGGGTTGGCTCTGTCCTGTGCCTACTCTTCAAAG 603
Query 596 CAAAAGAGAGCTAACGACCTGCTGCATGA-GAGACACAAACATTACAGTCAACACAACAA 654
||||||||| |||||||| |||||||| | ||||| | | ||||| ||||||||||||||
Sbjct 604 CAAAAGAGAACTAACGACGTGCTGCAT-ACGAGACGCGAGCATTATAGTCAACACAACAA 662
Query 655 TCACCACCAAATTCCTCCCACGACAACCCGGAGACTTGACCATAATGTACGACGTGATCC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCACCACCAAATTCCTCCCACGACAACCCGGAGACTTGACCATAATGTACGACGTGATCC 722
Query 715 GAGCCTACGACCAGAACTACCTAACCGAAGTAACCATGGAAAACCACAATCCACTAGGCC 774
||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 723 GAGCCTACGACCAGAACTACCTAACTGAAGTAACCATGGAAAACCACAACCCGCTAGGCA 782
Query 775 GACTCGACCATTGGGAGCTTAGTTTCGACTGGATGCGAGACGAGTTCATACAGAAGATGC 834
| || ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 783 GGCTTGACCATTGGGAGCTTAGTTTCGATTGGATGCGAGACGAGTTCATACAAAAAATGC 842
Query 835 AAGGCGCATATCCAACGGTCGTGGACGCCACGAAATGCATCTTTGGTCCTCAGTCTCTAA 894
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 843 AAGGCGCATATCCAACGGTCGTGGACGCCACAAAATGCATCTTTGGTCCTCAGTCCCTAA 902
Query 895 TCTACACTGGTCTAGATTTCGCTGACGTTCTCACATGTGAGAGACGACCAATCATCATAG 954
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 903 TCTACACTGGTCTAGATTTCGCTGACGTTCTCACATGTGAAAGAAGACCAATCATCATAG 962
Query 955 ACTTGCCTCCGACCAAAAAAGATGACACTACTTTAGGCAATATTCCTTCTTGCTGCAGAA 1014
|||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 963 ACTTGCCTCCAACCAAAAAAGATGACTCTACTTTAGGAAATATTCCTTCTTGCTGCAGAA 1022
Query 1015 ATGGTACAATCTTACCACGTATCATGGACCCTTCCAAATCAGTCTCCGTCTTCACGATGC 1074
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACGGTACCATCTTACCACGTATCATGGACCCTTCCAAATCAGTCTCCGTCTTCACGATGC 1082
Query 1075 AAGTTGCCAAAATGCCTCCTGATTTCAACCGATCCGCGCTTTTCCCACCGCAGAACTGGA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AAGTTGCCAAAATGCCTCCTGATTTCAACCGATCCGCGCTTTTCCCACCGCAGAACTGGA 1142
Query 1135 GGATTAAAGGGACGTTAAACCCGGATTACTCGTGCGGGCCACCCGTTCGGGTAAGCCCGA 1194
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1143 GGATTAAAGGGACGCTAAACCCGGATTACTCGTGCGGGCCACCCGTTCGGGTAACCCCGA 1202
Query 1195 CTTTTTATCCGGATCCGAGCGGTATGCCTACTAACAAATCATCTTTCGCCAGCTGGCAGA 1254
||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||
Sbjct 1203 CTTTTTATCCGGATCCGAGTGGTATGCCGACCAACAAATCATCTTTCGCCAGTTGGCAGA 1262
Query 1255 TTGTATGCAACATCACGCAAGCCAAAACCGAGATACCAAAATGTTGCGTCTCCTTCTCTG 1314
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1263 TCGTATGCAACATCACGCAAGCCAAAACCGAGATACCAAAATGTTGTGTCTCCTTCTCTG 1322
Query 1315 CTTTCTTCAACGACTCTATCATCCCTTGTAACACTTGCGCTTGCGGTTGCGTGTCGGAAA 1374
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1323 CTTTCTTCAACGACTCTATCATCCCTTGTAACACTTGCGCTTGTGGTTGCGTTTCCGAAA 1382
Query 1375 CGCGACGCACCTGCAGCGCGGAGTCTCCGTCTCTTCTCATCCCTCCAGACGCTCTTCTCT 1434
|||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1383 CGCGACGCACATGCAGTGCAGAAACTCCGTCTCTTCTCATCCCTCCAGACGCTCTTCTCT 1442
Query 1435 TACCTTTCGAAAACAGAACCGCTCTAACGCTTGCTTGGAACGCACTCAAACACAAAACCC 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TACCTTTCGAAAACAGAACCGCTCTAACGCTTGCTTGGAACGCACTCAAACACAAAACCC 1502
Query 1495 TACCTAACCCGATGCCGTGTGGCGACAATTGCGGTGTATCAATTAACTGGCACATGGCGT 1554
||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1503 TACCTAATCCAATGCCGTGTGGGGACAATTGCGGTGTATCGATTAACTGGCACATGGCGT 1562
Query 1555 CGGATTATAGAGGTGGTTGGACCGTGAGGATCACGATTTTCAACTGGGGAGAAATCGATT 1614
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1563 CGGATTATAGAGGTGGTTGGACAGTGAGGATCACGATTTTCAACTGGGGAGAGATAGATT 1622
Query 1615 TCCCCAACTGGTTCCTCGCGGTTCAGATGAAAAAACCGGCGCTTCTAGGGTTCGAAAAAG 1674
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1623 TTCCCAACTGGTTCCTTGCGGTTCAGATGAAGAAACCGGCGCTTCTAGGGTTCGAGAAAG 1682
Query 1675 CCTACTCATTCAACGCAAGTCTCCTAAGCGTGGACGGAGGTGTCAACAACACGATTTTTA 1734
||||||| || ||||| |||||||| ||||||||||||||||| |||||||| || || |
Sbjct 1683 CCTACTCGTTTAACGCGAGTCTCCTTAGCGTGGACGGAGGTGTAAACAACACCATCTTCA 1742
Query 1735 TGGAAGGTCTTCCTGGTCTGGATTATCTTGTGGCGGAGGCTGATGAAAAAGATCCAAAGA 1794
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TGGAAGGTCTTCCGGGTCTAGATTATCTTGTGGCGGAGGCTGATGAAAAAGATCCAAAGA 1802
Query 1795 AGAAGAATATTAGGATTCCGGGTAAACAACAATCGGTGATACAGTTCAGCAAGAAACTTA 1854
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1803 AGAAGAATATTAGGATTCCTGGTAAACAACAATCCGTGATACAGTTCAGCAAGAAACTCA 1862
Query 1855 CGCCGGGGATTAATGTGGCGGAACGTGACGGGTTTCCGGCGAAAGTGATATTTAACGGCG 1914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1863 CGCCGGGGATTAATGTGGCGGAACGTGACGGGTTTCCGGCGAAAGTGATATTTAACGGTG 1922
Query 1915 AGGAATGTTTGCTTCCTGATCTGCTTCCGATGGCTAGTGGTGGCAGACGAAATGGGGCTA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 AGGAATGTTTGCTTCCTGATCTGCTTCCGATGGCTAGTGGTGGCAGACGAAATGGGGCTA 1982
Query 1975 TCACGGTTTTGTCCTTTATAACGTTTTATGTTGCGGCCTTTATAATTCGGTTATAAGttt 2034
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||
Sbjct 1983 TCACGGTTTTGTCCTTTATAACGTTTTATGTTGCGGCGTTTATGGTTCTATTATAAGCTT 2042
Query 2035 ttttCTAGGGTTT-ATTATACTCTGTTTTGTTGATTGATTAATTTGTTTTGTAAAATAAA 2093
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 TTTACTAGGGTTTTATTATACTCTGTTTTGTTGATTGATTAATTTGTTTTGTAAAATAAA 2102
Query 2094 CCTGATTTCTTTACT--GCAGTTGTTTGTAAAACCATGCAATATTCTAG 2140
|||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2103 ATTGAT--CTTTACTCTGCAGTTGTTTGTAAAACCATGCAATATTCTAG 2149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106123952130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5