BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494989
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49280.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1295 0.0
AT3G06750.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 102 5e-21
> AT5G49280.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:19976594-19977449 REVERSE LENGTH=856
Length=856
Score = 1295 bits (701), Expect = 0.0
Identities = 808/858 (94%), Gaps = 14/858 (2%)
Strand=Plus/Plus
Query 1 ttcttcttcttcttctttcccactcctacagtctttctccctcctctctcgctctctcat 60
||||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||
Sbjct 8 TTCTTCTTCTTCTTCTTTCCCACTCCTAC--TCTTTCTCCCT-C-CTCT-GCTCTCTCAT 62
Query 61 cttcttcctctGTATATT-TT-ACACAAAACTAAGTTTCTAAATCCAATTTCTGACAATG 118
|| ||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||
Sbjct 63 CTACTTCCTCTGTATATTCTTCGCACAAAATTAAGTTTCTAAATCCAGTTTCTGACAATG 122
Query 119 GAAACAAACCATTTATACACTTTTTCTACACTTGTTGTTATACTGCTAATGTCAGTGACA 178
||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 123 GAAACAAACCATTTATACACTTTGTCTACACTTGTTGTTATGCTGCTAGTGTCAGTGACA 182
Query 179 CCGACAGTAACATCTAAAGACGAGGTTGTTTCTTGTACAATGTGTTCTTCATGCGACAAT 238
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCGACAGTGACATCAAAAGACGAGGTTGTTTCTTGTACAATGTGTTCTTCATGCGACAAT 242
Query 239 CCATGTAGTCCCGTCCAATCTTCTCCACCGCCCCCTTCTCCTCCACCACCGTCAACCCCC 298
||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 243 CCATGTAGTCCTGTCCAATCATCTCCTCCGCCACCTTCTCCTCCACCACCGTCAACCCCC 302
Query 299 ACGACCGCATGTCCTCCCCCTCCTTCTCCTCCAAGCTCCGGTGGCGGTAGCTCTTACTAT 358
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ACAACCGCATGTCCTCCCCCTCCTTCTCCTCCAAGCTCCGGTGGCGGTAGCTCTTACTAT 362
Query 359 TACCCTCCTCCTTCTCAGTCCGGTGGAGGCGGCAAATACCCTCCACCTTACGGTGGCGGT 418
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 363 TACCCTCCTCCTTCTCAGTCCGGTGGAGGCAGTAAATACCCTCCACCATACGGTGGCGGT 422
Query 419 GGTCAAGGTTATTACTATCCTCCGCCGTATTCAGGAAACTATCCTATGCCGCCTCCGCCG 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 423 GGTCAAGGTTATTACTATCCTCCGCCGTATTCAGGAAACTATCCTACGCCGCCTCCGCCG 482
Query 479 AATCCGATCGTCCCTTATTTTCCGTTTTACTATCATACTCCACCACCAGGTTCTGGTTCA 538
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 483 AATCCGATCGTCCCTTATTTCCCGTTTTACTATCATACTCCACCACCAGGTTCTGGCTCA 542
Query 539 GATCGGTTTATGAGTTCTTGTTCTATTAtttttactttttttGCTGTCTTTCTCTGTTTA 598
||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 543 GATCGGTTTATGAGTTCTTACTCTATTATTTTTGCTCTTTTTGCTGTCTTTCTCTGTTTA 602
Query 599 GTGTGACGGATAAATATTCGGAAA-TTCGCCGG-AAATTTATGAAGaaaaaaaTCGAAAT 656
|||||||||| ||||| ||||||| |||||||| ||| | | ||||||||| |||||||
Sbjct 603 GTGTGACGGA-AAATAGTCGGAAAATTCGCCGGGAAAATGACGAAGAAAAAG-TCGAAAT 660
Query 657 AATGTGGCAGATCGGTAGATCTATAAATGTTTAGATATCTTTGATCATGGAAAC-AAGAT 715
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| || ||
Sbjct 661 AATGTGGCAGATCCGTAGATCTATAAATCTTTAGATTTCTTTGATCATGGAAACTAA-AT 719
Query 716 GATGTTGGATCTTTTACTTTCTTCGATCTGTTTTAACTTTTTCTTTTGTTGTTGACAATT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATGTTGGATCTTTTACTTTCTTCGATCTGTTTTAACTTTTTCTTTTGTTGTTGACAATT 779
Query 776 TGTATTTAATTGATCTTGACAATTAACATACTTAATTACTCGTTATTCAGATTTCAGAAA 835
|||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 780 TGTATTTAATTGTTCTTGATTATTAACATA-TTAATTACTCGTTATTCAGATTTCAAAAA 838
Query 836 TAAAGAATTGTTACTTTC 853
||||||||||||||||||
Sbjct 839 TAAAGAATTGTTACTTTC 856
> AT3G06750.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:2129623-2130315 REVERSE LENGTH=693
Length=693
Score = 102 bits (55), Expect = 5e-21
Identities = 168/220 (76%), Gaps = 17/220 (8%)
Strand=Plus/Plus
Query 310 TCCTCCCCCTCCTTCTCC-TCCAAGCTCCGGTGGCGGTAGCTCTTACTATTA--C-CCTC 365
|||||| |||||| | || | ||||||||||||||||| | ||||| ||||| | ||||
Sbjct 257 TCCTCCTCCTCCTCCGCCAT-CAAGCTCCGGTGGCGGTGGATCTTATTATTACTCTCCTC 315
Query 366 CTCCTTC-TC-AG-TCCGGTGGAGGCGGCAAATACCCTCCACCTTACGGTGGCGGTGGTC 422
||||| | || || |||||| || | |||||||| || || ||||| |||| || |
Sbjct 316 CTCCTCCTTCAAGCTCCGGT---GGTGTTAAATACCCGCCTCCGTACGGCGGCGACGG-C 371
Query 423 -AAGGTTATTACTATCCTCCGCCGTA-TTCAGGAAACTATC-CTATGCCGCCTCCGCCGA 479
| ||| || ||||| || || || | | || || || | | || || || ||||
Sbjct 372 TACGGTGGCTATTATCCGCCTCCTTACTAC-GGCAATTA-CGGGACACCACCACCACCGA 429
Query 480 ATCCGATCGTCCCTTATTTTCCGTTTTACTATCATACTCC 519
|||||||||| |||||||||||||||||||||||||||||
Sbjct 430 ATCCGATCGTTCCTTATTTTCCGTTTTACTATCATACTCC 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5