BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494993
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49350.1 | Symbols: | Glycine-rich protein family | chr5:20... 706 0.0
> AT5G49350.1 | Symbols: | Glycine-rich protein family | chr5:20009741-20011099
REVERSE LENGTH=1006
Length=1006
Score = 706 bits (382), Expect = 0.0
Identities = 517/579 (89%), Gaps = 21/579 (4%)
Strand=Plus/Plus
Query 373 tggaggaggaggaggaggaTTAGGTGGGGGTGGTGTTAACGGAGGCTTCGGAGGAGGCGG 432
|||||| |||| ||||||||||||||||||||| | ||| ||||| ||||||||||| ||
Sbjct 442 TGGAGGCGGAGCAGGAGGATTAGGTGGGGGTGGGGGTAATGGAGGTTTCGGAGGAGGAGG 501
Query 433 --T-GGCGGCGGCGGCTTAGGTGGGGAAGGTCCACCGGAGATAGTTGCCAAAGCTTTGGA 489
| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 502 ATTAGGCGGCGGGGGATTAGGTGGGGAAGATCCACCGGAGATAGTTGCCAAAGCTTTGGA 561
Query 490 ATGTTTAAATGAGAAACACATATATAGAGAGTGTGAAGAAACATGGAGGCTAACGTTAAA 549
||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 562 ATGCTTAAATGAGAAACACATATACAGAGAGTGTGATGAATCATGGAGGCTAACGTTAAA 621
Query 550 CGGAGACCTAAATATTCCGGTGGCGAGTACGGAGGAGTTCTGCGAAGGACCATGCTTCTC 609
||||||||||||||||||| ||| ||| || || |||||||| |||||||||||||||||
Sbjct 622 CGGAGACCTAAATATTCCGCTGGGGAGGACAGAAGAGTTCTGTGAAGGACCATGCTTCTC 681
Query 610 CGAGACACATTTGGCTTTGAATTGCATTGAAGATATTATTCATCACTACAGATTCTTTAA 669
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 682 AGAAACACATTTGGCTTTGAATTGCATTGAAGAAATTATTCACCACTACAGATTCTTTAA 741
Query 670 CAGAGCAACAATTCACGACATCCGTGAAACCCTCAAGTCTGGCTGCAGCTACGGACCTGA 729
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CAGAGCCACCATTCACGACATCCGTGAAACCCTCAAGTCTGGCTGCAGCTACGGACCTGA 801
Query 730 ACGAGGTGATTTCAACGTTTTGGAACATATTGAAGCTGAAGAAGAAAATAG-AAGTGAGA 788
|||||||| ||||||||| ||||| |||||||||| ||||||||||||| | ||||||||
Sbjct 802 ACGAGGTGTTTTCAACGTCTTGGAGCATATTGAAGATGAAGAAGAAAAT-GCAAGTGAGA 860
Query 789 AGATAAAGTCAAAATCTGGACCGTTGCTTGGGACTGTGTTGTTCACCATTGCCTTGCTTC 848
|||||||||||| || ||| |||||||| | | | | | | ||||||||||||
Sbjct 861 AGATAAAGTCAAGATTTGGGCCGTTGCT----A-T-TCAT-T--A---TTGCCTTGCTTC 908
Query 849 TCTAAGACTTTTCTTAATTTTTAATTTTAGCCATTATCAT-ATATACATATATATGTTGC 907
|||||||| | |||||||||||||| |||||||||||| | |||||||||||| |||||
Sbjct 909 TCTAAGACCTCTCTTAATTTTTAATCTTAGCCATTATC-TGATATACATATAT--GTTGC 965
Query 908 TTATCTAATTAATACAATAAATATAAACCGATCTCTTTG 946
||||||| ||||||||||||||||||||||| || ||||
Sbjct 966 TTATCTAGTTAATACAATAAATATAAACCGAACTATTTG 1004
Score = 289 bits (156), Expect = 4e-77
Identities = 184/198 (93%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 AGCAATGGCGTTTTCATTTATCAGAGAGCTCCGGATCTCAGTGACCCTTGTCGttttttt 60
|||||||||||||||||| | ||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1 AGCAATGGCGTTTTCATTCAACAGAGAGCTCCGGATCTCAGTCACCATTGTCACTTTTTT 60
Query 61 CTTCCTCTTAGTTTCCTTTCAAGGGAACACTTATAGTGAAGAAGATGATTCAGAGGCAGG 120
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 61 CTTCCTCTTAGTTTCCTTTCCAGGGAACACTTATAGTGAAGAAGACGATTCAGAGGTAGG 120
Query 121 AGGTGCAGGTGGAGGAGTTGGAGGCGGAGGGACAGGATTTGGCGGTGGTGGGACTGGTGT 180
||||| |||||||||| ||||||| || || |||||||||||||||||||||||||||||
Sbjct 121 AGGTGAAGGTGGAGGAATTGGAGGTGGCGGCACAGGATTTGGCGGTGGTGGGACTGGTGT 180
Query 181 GGGAGGCGGAGGGACAGG 198
||||||||||||||||||
Sbjct 181 GGGAGGCGGAGGGACAGG 198
Score = 161 bits (87), Expect = 9e-39
Identities = 179/220 (81%), Gaps = 20/220 (9%)
Strand=Plus/Plus
Query 122 GGTGCAGGTGG-AGGAGTTGGAGGCGGAGGGA-CAGGATTTGGCGGTGGTGGGACTGGTG 179
||||| ||||| | | | |||||| ||| | | |||||| |||||||||||||||||||
Sbjct 296 GGTGCTGGTGGCA-GTGGTGGAGGAGGA-GCAGGAGGATTAGGCGGTGGTGGGACTGGTG 353
Query 180 TGGGAGGCGGAGGGACAGGCGGTGGTACTGGATTTAACGGCGGAGGGACAGGTTTTGG-C 238
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 354 TGGGAGGCGGAGGGACAGGTGGTGGTACTGGATTTAACGGCGGAGGGACAGGTTTTGGGC 413
Query 239 GGA--GGAGGAACAGGAGGTTTAGGCGGTGGC-GGTGGTAAcggaggagcaggaggatta 295
|| ||| ||||| || || | | | ||||| | || |||||||||||||||
Sbjct 414 CTTTTGGCGGA---GGAGGGTT-GG-G-TA-CTGGTGG-A--GGCGGAGCAGGAGGATTA 463
Query 296 ggcggtagcggtggtaacggaggcttt-ggaggaggagga 334
|| || | || ||||| ||||| ||| ||||||||||||
Sbjct 464 GGTGGGGGTGGGGGTAATGGAGG-TTTCGGAGGAGGAGGA 502
Score = 65.8 bits (35), Expect = 7e-10
Identities = 61/73 (84%), Gaps = 4/73 (5%)
Strand=Plus/Plus
Query 122 GGTGCAGGTGG-AGGAGTTGGAGGCGGAGGGA-CAGGATTTGGCGGTGGTGGGACTGGTG 179
||||| ||||| | | | |||||| ||| | | |||||| ||| |||||||||||||||
Sbjct 218 GGTGCTGGTGGCA-GTGGTGGAGGAGGA-GCAGGAGGATTAGGCAGTGGTGGGACTGGTG 275
Query 180 TGGGAGGCGGAGG 192
|||||||||||||
Sbjct 276 TGGGAGGCGGAGG 288
Score = 45.4 bits (24), Expect = 0.001
Identities = 33/37 (89%), Gaps = 2/37 (5%)
Strand=Plus/Plus
Query 263 GGTGGCGGTGGTA-Acggaggagcaggaggattaggc 298
|||||| ||||| | |||||||||||||||||||||
Sbjct 224 GGTGGCAGTGGTGGA-GGAGGAGCAGGAGGATTAGGC 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5