BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494997
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49400.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 1487 0.0
> AT5G49400.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr5:20030700-20032175 FORWARD LENGTH=1139
Length=1139
Score = 1487 bits (805), Expect = 0.0
Identities = 1000/1091 (92%), Gaps = 26/1091 (2%)
Strand=Plus/Plus
Query 28 ATTCCAAGCACGCTCCTTCGATCTTCCTCTTGGTGATACTCTCGTTTCTAATTGTAACAT 87
||||||||||||||||||||||||||||||| | | ||| ||||||||||||| |||||
Sbjct 64 ATTCCAAGCACGCTCCTTCGATCTTCCTCTT-G-G-TACGCTCGTTTCTAATT-AAACAT 119
Query 88 GTCTAATTCAAAGGACGAGAAAGCACAAGTTGCAGCTGATAAAATCAAGGCTGCAACACT 147
|||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 120 GTCTAATTCAAAGGACGAGAAATCACAAGATGCAGCTGATAGAATCAAGGCTGCAACACT 179
Query 148 CACTGCTGCTAAAGGTCTGAGTCGTACTCAAGCTGAGCGAGCAGCAGCTGCAGCGGCGAG 207
|||||||||||||||||| || ||||| ||||| ||| ||||||| |||||||| |||||
Sbjct 180 CACTGCTGCTAAAGGTCTAAGCCGTACACAAGCGGAGAGAGCAGCGGCTGCAGCAGCGAG 239
Query 208 AAACGTTAACGCTTATGGGCA-AAAGGAAGAAGGTCCCAGTAGATGGCAGGAGAAAAGAG 266
|||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||
Sbjct 240 AAACGTTAACGCTTATGGCCAGAAA-GAAGAAGGTCCGAGTAGATGGCAGGAGAAAAGAG 298
Query 267 AATTAAAGAGGCAGATGTATTTGATGAGTACCGAGAAAGCGGTTAGGCTTGGTGAAAGGA 326
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 299 AATTAAAGAGGCAGATGTATTTGATGAGTACTGAGAAAGCTGTCAGGCTTGGTGAAAGGA 358
Query 327 AAGACAAAACTATGTCAGCTTCTGCCGTGGGAAGCAGTGCTTCGGCTGCTTCACTGTGCC 386
|||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| |
Sbjct 359 AAGATAAAACAATGTCAGCTTCAGCCGTGGGAAGCAGTGCTTCGGCGGCTTCACAGTGTC 418
Query 387 AGAAATGTTTCCAAACTGGACATTGGACTTATGAGTGTAAGAATGAAAGGGTTTATATCT 446
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGAAATGTTTCCAAGCTGGGCATTGGACTTATGAGTGTAAGAATGAAAGGGTTTATATCT 478
Query 447 CCAGGCCTTCGAGAACCCAGCAGCTTAAGAATCCTAAACTGAGAATGAAGCCTTC-gatt 505
| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 479 CGAGGCCTTCGAGAACTCAGCAGCTTAAGAATCCTAAACTGAGAACGAAGCCTTCTG-TT 537
Query 506 gatgatcttgatggtaatgatgatgatgatgatgaAGAAAAGCCAGATGCAACTAATGGG 565
|||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 538 GATGATCTTGATGGTAGTGATGATGATGATGAAGAAGAAAGGCCTGATGCAACTAATGGG 597
Query 566 AAAGCGGAAGTGGAGAGGCGGTCTAAGAAGAGTAAGAGAAAGCATAGGTCAAAGTCTGAT 625
||||| ||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 598 AAAGCAGAAGTTGAGAAGCGATCTAAGAAGAGTAAGCGAAAGCATAGGTCAAAGTCTGAT 657
Query 626 TCTGGAAGTGACAGTGAAGCCTCTGTGTTTGAAACAGATAGTGACGGCTCATCTGGAGAG 685
|||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TCTGAAAGTGATAGTGAAGCCTCTGTGTTTGAAACAGATAGTGATGGCTCATCTGGAGAG 717
Query 686 AGTAGTTCAGAATACAGTTCATCTTCGGACTCagaggacgaaaggaggaggaaaagaaag 745
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 718 AGTAGTTCAGAATACAGTTCATCGTCGGACTCAGAGGACGAAAGGAGGAGGAGAAGAAAG 777
Query 746 gcgaagaagagcaagaagaaacaaaagcagagtaaagaaaggcgaagaagaTACAGCTCT 805
|| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 778 GCCAAGAAGAGCAAGAAGAAGCAAAAGCAGAGGAAAGAAAGGCGAAGAAGGTACAGCTCT 837
Query 806 TCTTCGTCGGAGTCATCTGAGTCAGAATCAGCTTCGGACTCAGATTCTGATGGAGATAGA 865
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 TCTTCATCGGAGTCATCTGAGTCAGAATCAGCTTCGGACTCAGATTCTGATGAAGATAGA 897
Query 866 AGCAGAAGAAAGAAGAAGAGCAAGAGGCACAGCAACAAACGTCGATGAATTGGTTTTCAG 925
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 898 AGCAGAAGAAAGAAGAAGAGCAAGAGGCACAGCAACAAGCGTCGTTGAATTGGTTTT-AG 956
Query 926 GAAATCAGA-AAGTGGATGAAAATTCTTATATGCCTTTTTAGAATGAATCATTTTGTTCT 984
|||||| || ||||||||||||||| || ||||||| ||||| |||||| ||
Sbjct 957 GAAATC-GATAAGTGGATGAAAATT-TTC-ATGCCTT---AGAAT----CATTTTAAGCT 1006
Query 985 ACATGAAGAAAACTCACTGCT-TCTTTCTTCTTTTTCCTCAAGTTCG-TTTTTTCGTTT- 1041
| | ||| |||||||||||| | || |||||||||| ||||||||| ||||||| |||
Sbjct 1007 TCTTAAAGGAAACTCACTGCTATGTTACTTCTTTTTCTTCAAGTTCGATTTTTTCTTTTT 1066
Query 1042 GTCAGCCATTTATGGCTGT--GTTGTAACAAACTGATGAATCTT-AGAATCCCCTCAAGT 1098
||||||||||||||||| | |||||||||||||||| |||||| |||||| ||||||||
Sbjct 1067 GTCAGCCATTTATGGCTTTATGTTGTAACAAACTGATAAATCTTTAGAATCTCCTCAAGT 1126
Query 1099 TTTCATAGCTC 1109
|||||||||||
Sbjct 1127 TTTCATAGCTC 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5