BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495000
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49448.1 | Symbols: CPuORF4 | conserved peptide upstream ope... 828 0.0
AT5G49450.1 | Symbols: AtbZIP1, bZIP1 | basic leucine-zipper 1 ... 828 0.0
> AT5G49448.1 | Symbols: CPuORF4 | conserved peptide upstream open
reading frame 4 | chr5:20051829-20052735 FORWARD LENGTH=907
Length=907
Score = 828 bits (448), Expect = 0.0
Identities = 671/767 (87%), Gaps = 62/767 (8%)
Strand=Plus/Plus
Query 1 TCCCACTTTCCTTATTTTCGATCTTATCCTTATCTTCTTGCTTGTTCTATTTCTC-T-T- 57
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 4 TCCCACTTTCCTTATTTTCGATCTTATCCTTATCTTCTTCCTTGTTCTATTTCTCTTCTA 63
Query 58 -CTAA-------------C-T--AATCACACCTAATCATAAAT----ATCTTATTGTTTA 96
|||| | | ||||| || ||||||||||| ||||| |||||||
Sbjct 64 ACTAATCTCTTCTCTTCTCTTAAAATCAAACGTAATCATAAATAAAGATCTTCTTGTTTA 123
Query 97 ATTTCTCAAGATCTTCGTC-AAATCACAGATTCTTGAAA-----------T-TC-T---- 138
||||||| |||| ||| | ||||||||||||||||||| | || |
Sbjct 124 ATTTCTCTTGATCCTCG-CAAAATCACAGATTCTTGAAATTCTTTTTTCTTGTCTTGAAA 182
Query 139 TT-TT-AGTTCTTGAGTTATGAAATGACAATGGAGAGAGTTATGAAATGATAAATCTCAA 196
|| || |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 183 TTCTTGAGTTCTTGAGTTATGAAAAGACAATGGACAGAGTTATGAAATGATAAATCTCAA 242
Query 197 CCAATTTTCACGATTCCTTGTTTATCATTCTATATCCGTTGTGATTCTTCACTGGTTTTA 256
| || |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 243 -C------CA--ATTCCTTGTTTATCATTCTATATCAGTTGTGATTCTTCATTGGTTTTA 293
Query 257 CGTTATCTCTTAAAACAGAAAAACATGGCAAACGCAGAGAGGACAAGTTCAGGTTCCGAC 316
||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 294 CGTTATCTCTT-GAACAAAAAAACATGGCAAACGCAGAGAAGACAAGTTCAGGTTCCGAC 352
Query 317 ATGGATGAGAAGAAAAGAAAACGCAAATTATCAAACCGCGAATCAGCTAGGAGGTCGCGT 376
|| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 353 ATAGATGAGAAGAAAAGAAAACGCAAGTTATCAAACCGCGAATCTGCAAGGAGGTCGCGT 412
Query 377 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCGAGTCTTGAACGACGA 436
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 413 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCCAGTCTTGAACGACGA 472
Query 437 ATCAAAGAGAACAGCGAGAGATGTCGTGTTGTGAAACAGAGGCTTGACTCGGTCGAATCG 496
|||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| ||
Sbjct 473 ATCAAAGAGAACAGTGAGAGATGTCGAGCTGTAAAACAGAGGCTTGACTCGGTCGAAACG 532
Query 497 GAGAACGCGGTTCTTA-AGTCGGAGAAGATTTGGCTTTCGAATTACGTTAGCGATTTAGA 555
|||||||||| ||||| | ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 533 GAGAACGCGGGTCTTAGA-TCGGAGAAGATTTGGCTCTCGAGTTACGTTAGCGATTTAGA 591
Query 556 GAATATGATTGCTACGACGAGTTTAACTCTGACGCAGAATGGTGGTGGTGGCGATTGCGG 615
||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
Sbjct 592 GAATATGATTGCTACGACGAGTTTAACGCTGACGCAGA--G-TGGTGGTGGCGATTGTG- 647
Query 616 T-GATGATCAGAACGCAAACGCGGAAATAGCGGTTGGAGATTGTAGACGTAGACCGTGGA 674
| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 648 TCGACGATCAGAACGCAAACGCGGGAATAGCGGTTGGAGATTGTAGACGTACACCGTGGA 707
Query 675 AATTGAGTTGTGATTCTCTACAACCAATCGCGTCCTTTAAGACATGA 721
|||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 708 AATTGAGTTGTGGTTCTCTACAACCAATGGCGTCCTTTAAGACATGA 754
> AT5G49450.1 | Symbols: AtbZIP1, bZIP1 | basic leucine-zipper
1 | chr5:20051829-20052735 FORWARD LENGTH=907
Length=907
Score = 828 bits (448), Expect = 0.0
Identities = 671/767 (87%), Gaps = 62/767 (8%)
Strand=Plus/Plus
Query 1 TCCCACTTTCCTTATTTTCGATCTTATCCTTATCTTCTTGCTTGTTCTATTTCTC-T-T- 57
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 4 TCCCACTTTCCTTATTTTCGATCTTATCCTTATCTTCTTCCTTGTTCTATTTCTCTTCTA 63
Query 58 -CTAA-------------C-T--AATCACACCTAATCATAAAT----ATCTTATTGTTTA 96
|||| | | ||||| || ||||||||||| ||||| |||||||
Sbjct 64 ACTAATCTCTTCTCTTCTCTTAAAATCAAACGTAATCATAAATAAAGATCTTCTTGTTTA 123
Query 97 ATTTCTCAAGATCTTCGTC-AAATCACAGATTCTTGAAA-----------T-TC-T---- 138
||||||| |||| ||| | ||||||||||||||||||| | || |
Sbjct 124 ATTTCTCTTGATCCTCG-CAAAATCACAGATTCTTGAAATTCTTTTTTCTTGTCTTGAAA 182
Query 139 TT-TT-AGTTCTTGAGTTATGAAATGACAATGGAGAGAGTTATGAAATGATAAATCTCAA 196
|| || |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 183 TTCTTGAGTTCTTGAGTTATGAAAAGACAATGGACAGAGTTATGAAATGATAAATCTCAA 242
Query 197 CCAATTTTCACGATTCCTTGTTTATCATTCTATATCCGTTGTGATTCTTCACTGGTTTTA 256
| || |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 243 -C------CA--ATTCCTTGTTTATCATTCTATATCAGTTGTGATTCTTCATTGGTTTTA 293
Query 257 CGTTATCTCTTAAAACAGAAAAACATGGCAAACGCAGAGAGGACAAGTTCAGGTTCCGAC 316
||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 294 CGTTATCTCTT-GAACAAAAAAACATGGCAAACGCAGAGAAGACAAGTTCAGGTTCCGAC 352
Query 317 ATGGATGAGAAGAAAAGAAAACGCAAATTATCAAACCGCGAATCAGCTAGGAGGTCGCGT 376
|| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 353 ATAGATGAGAAGAAAAGAAAACGCAAGTTATCAAACCGCGAATCTGCAAGGAGGTCGCGT 412
Query 377 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCGAGTCTTGAACGACGA 436
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 413 TTGAAGAAACAGAAGTTAATGGAAGACACGATTCATGAGATCTCCAGTCTTGAACGACGA 472
Query 437 ATCAAAGAGAACAGCGAGAGATGTCGTGTTGTGAAACAGAGGCTTGACTCGGTCGAATCG 496
|||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| ||
Sbjct 473 ATCAAAGAGAACAGTGAGAGATGTCGAGCTGTAAAACAGAGGCTTGACTCGGTCGAAACG 532
Query 497 GAGAACGCGGTTCTTA-AGTCGGAGAAGATTTGGCTTTCGAATTACGTTAGCGATTTAGA 555
|||||||||| ||||| | ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 533 GAGAACGCGGGTCTTAGA-TCGGAGAAGATTTGGCTCTCGAGTTACGTTAGCGATTTAGA 591
Query 556 GAATATGATTGCTACGACGAGTTTAACTCTGACGCAGAATGGTGGTGGTGGCGATTGCGG 615
||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
Sbjct 592 GAATATGATTGCTACGACGAGTTTAACGCTGACGCAGA--G-TGGTGGTGGCGATTGTG- 647
Query 616 T-GATGATCAGAACGCAAACGCGGAAATAGCGGTTGGAGATTGTAGACGTAGACCGTGGA 674
| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 648 TCGACGATCAGAACGCAAACGCGGGAATAGCGGTTGGAGATTGTAGACGTACACCGTGGA 707
Query 675 AATTGAGTTGTGATTCTCTACAACCAATCGCGTCCTTTAAGACATGA 721
|||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 708 AATTGAGTTGTGGTTCTCTACAACCAATGGCGTCCTTTAAGACATGA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5