BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495005
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49480.1 | Symbols: ATCP1, CP1 | Ca2+-binding protein 1 | ch... 1040 0.0
> AT5G49480.1 | Symbols: ATCP1, CP1 | Ca2+-binding protein 1 |
chr5:20070743-20071638 FORWARD LENGTH=896
Length=896
Score = 1040 bits (563), Expect = 0.0
Identities = 662/706 (94%), Gaps = 22/706 (3%)
Strand=Plus/Plus
Query 1 AAAGCTTCCTTCACAATCTCAAAAGCCA-TTTTCAAATTTCAAAAAACTCAGAGAGATCA 59
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 11 AAAGCTTCCTTCACAATCTCAAAAGCCATTTTTCAAATTTC---AAACTCAGAGAGA--G 65
Query 60 AGCGATGTGTCCTTCCGGTAGAATCGCGATTCCGATAACCACCACCGCGAATTCAGATTT 119
|| |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 66 AGAGATGTGTCCTTCTGGTAGAATCGCGATTCCGATAACCACCACCGCGAATCCAAATTT 125
Query 120 CCGTCCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CCGACCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 185
Query 180 CCGTGCATTCTACGCCGGAATCACTTCCGGTGAAAACAACGACGAGGCGATGATCGGAAC 239
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 186 CCGTGCATTCTACGCCGGAATCCCTTCCGGTGAAAACAACGACGAGACGATGATCGGAAC 245
Query 240 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAGTTCGAGAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 246 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAATTCGAGAA 305
Query 300 AGTTCTAGAAACGGCGCCGTTGTTGTGTAGATCTGGTAACGGAGGAGACGATGGATTGAT 359
||||||||||||| ||||| | || | |||||||||||||||||||||||||||||||||
Sbjct 306 AGTTCTAGAAACGACGCCG-T-TT-TCTAGATCTGGTAACGGAGGAGACGATGGATTGAT 362
Query 360 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGATTGAGTTACGGAGATCT 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 363 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGACTGAGTTACGGAGATCT 422
Query 420 GAAAAGTTATATGGATTCGGCTGGTTTAGCTGCTT-CCGATGATGAAATCAAAGCTATGA 478
||| |||||||||||||||||||||||||||| | |||| |||||||||||| ||||||
Sbjct 423 GAAGAGTTATATGGATTCGGCTGGTTTAGCTG-TAACCGACGATGAAATCAAATCTATGA 481
Query 479 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTTGACGGTTTGCTTAAGATTT 538
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 482 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTCGACGGTCTGCTTAAGATCT 541
Query 539 TTGGGTGTTGaaaaaaaaa-TT-GttttttttGACACCGCACATTTTCCAACTTTATTTA 596
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 542 TTGGGTGTTGAAAAAAAAAGTTCGTTTTTTTTGACACCGCACATTTTCCAACTTTATTTT 601
Query 597 -T--CTCAGCtttgtttgtttgtttgtttgcagaagtgtatttgtgtccacccagatttt 653
| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GTTTCTCAG-TTT-T--GTTTGTTTGTTTGCAGAAGTGTATTTGTGTCCACCCAGATTTT 657
Query 654 gttttctctgttgttATAAAAATGTGAGAAAATTAATGTTGGAACA 699
||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 658 GTTTTAT--GTTGTTATAAAAATGTGAGAAAACTAATGTTGGAACA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5