BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495006
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 713 0.0
AT3G48630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 309 3e-83
> AT3G44150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr3:15887587-15888848 FORWARD LENGTH=891
Length=891
Score = 713 bits (386), Expect = 0.0
Identities = 534/600 (89%), Gaps = 31/600 (5%)
Strand=Plus/Plus
Query 287 ATCTCTCTCCTCTCCATCAACACCTCCGCCTTCTTCCCGAGACAACTATGGTGGATATAT 346
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 313 ATCTCTCTCCTCTCCATCAACACCTCCGCCTTCTTCCCG-GACAACTATGGTGGATATAT 371
Query 347 GGTGGCATTCGCGGGTCGGAAATACGCAGCGAGGT-TGATTCCGGCTTTTATTGCTAATA 405
||| |||||||||||||| |||||||||||||||| | || |||||||||||||||||||
Sbjct 372 GGTAGCATTCGCGGGTCGAAAATACGCAGCGAGGTCT-ATACCGGCTTTTATTGCTAATA 430
Query 406 GCACGTTCATCGTAACCAGTTTTACTTTAATTCATCATGAGATCTTATTTATGGTGTTGT 465
|||| |||||||||||||||||||| | || | ||| || | || | | |
Sbjct 431 GCACCTTCATCGTAACCAGTTTTAC--T--TTGGTGATG-GA--GT-TTCA--G-AAAGG 479
Query 466 TATGCTTCAAAATCTGTATTGGAAGAGAGACGGGTGTGCGTCGTGCAAGGGGAATCAAAA 525
|| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 480 TAGGCTTCAGAATCTGTATTGGAAGAGAGACGGGTGTGCGTCGTGTAAAGGGAATCAAAA 539
Query 526 --TT-T-TG----AACAAGCAAGATTGTGCGATAAGAACACCGAGCTGTAAAGGTCGGGG 577
|| | || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTTGTGTGTCTTAATAAGCAAGATTGTGCGATAAGAACACCGAGCTGTAAAGGTCGGGG 599
Query 578 AGGTTCAGTGGATTGCAGTCTCGGGATTCAGTTGGCATTTTTTGGCACTGATAAGCACTT 637
|||| | ||||| || ||||||||||| ||| |||| |||| || ||||||||||||||
Sbjct 600 AGGTGCCGTGGACTGTAGTCTCGGGATACAGCTGGCGTTTTCCGGGACTGATAAGCACTT 659
Query 638 GGCGGTTCTCAACTCGTGGTATGAAGTCGAGAATCTTAAGCAGTATTCTCTTTATGGTTT 697
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 GGCGGTTCTCAACTCGTGGTATGAAGTTGAGAATCTTAAGCAGTATTCTCTTTATGGTTT 719
Query 698 GTATTCAAACCTCAAGAGCTCTTTAACCAATCAGTTCAATAATTTCTTTTGAGCTTCTTG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTATTCAAACCTCAAGAGCTCTTTAACCAATCAGTTCAATAATTTCTTTTGAGCTTCTTG 779
Query 758 ATGACTTGTATTTGTTTGTTTGTTTGTTTGTATCACGTAAGTTAATCTCTTTGGTTACT- 816
| || ||| || | || |||||||||||||||||||||||||||||||||| |||
Sbjct 780 AGGA---GTA---GTAT-TT-GTTTGTTTGTATCACGTAAGTTAATCTCTTTGGTGACTT 831
Query 817 CTCTAATGGTTTATGGAATGTAACACGAAATTGCAGAAGTAGTTATGGTTTGGTTCAACC 876
||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 832 CTCTAATGGTTTATGAAATGTAACACGAAATTGCGGAAATAGTTATGGTTTGGTTCAACC 891
Score = 311 bits (168), Expect = 8e-84
Identities = 261/302 (86%), Gaps = 22/302 (7%)
Strand=Plus/Plus
Query 1 ATTTCCATAACAATTTC--aa-aaaa-aaaaTGTTCCCTTCGAAAACCCTAGCTAACACT 56
||||||| ||||||||| || |||| ||||||||| ||||||||| || ||||||||
Sbjct 1 ATTTCCACAACAATTTCAAAACAAAACAAAATGTTCTCTTCGAAAA-CC---CTAACACT 56
Query 57 CCTCGTCTTCTCCGCCGTGACACTTTCCACAAAACCGTAGCCATAGGCGGAGACGGCGGA 116
|||||||||||||||||||| || | | | |||||||| ||||||||||| |||||
Sbjct 57 CCTCGTCTTCTCCGCCGTGA---TT-CTA-A---CCGTAGCCTTAGGCGGAGACAGCGGA 108
Query 117 GGA--AG-TAACACCAACAAC-ATCTATTCCCCATGCTCTGACACCAGAATCCAAAGATC 172
|| || ||||||||||| | |||||||| |||||||| |||||| |||||||||||||
Sbjct 109 GGTTCAGGTAACACCAACA-CTATCTATTCACCATGCTCCGACACCCGAATCCAAAGATC 167
Query 173 CGACGGATTCACATTCGGAATCGCAttctcttctcgtccttctttcttcttaaaccaaac 232
||| |||||||||||||| |||||||||||||||||||| || |||||| ||||||||||
Sbjct 168 CGATGGATTCACATTCGGTATCGCATTCTCTTCTCGTCCCTCCTTCTTCATAAACCAAAC 227
Query 233 ggttcttctctctcCCTGTGACCATCGACTTTCCCTTGCCGCCATGAATTCACAATCTCT 292
||||||||||||||||||||||| || |||||||| ||||||||||||||||| | |||
Sbjct 228 GGTTCTTCTCTCTCCCTGTGACCGCCGCCTTTCCCTCGCCGCCATGAATTCACAGT-TCT 286
Query 293 CT 294
||
Sbjct 287 CT 288
> AT3G48630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G44150.1);
Has 64 Blast hits to 64 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18018226-18018808
REVERSE LENGTH=421
Length=421
Score = 309 bits (167), Expect = 3e-83
Identities = 221/246 (90%), Gaps = 8/246 (3%)
Strand=Plus/Plus
Query 567 AAAGGTCGGGGAGGTTCAGTGGATTGCAGTCTCGGGATTCAGTTGGCATTTTTTGGCACT 626
||||| |||||||||||||||| || ||||| ||||||||| |||| |||| ||||||
Sbjct 182 AAAGGCCGGGGAGGTTCAGTGGGCTGTAGTCTTGGGATTCAGCTGGCGTTTTCCGGCACT 241
Query 627 GATAAGCACTTGGCGGTTCTCAACTCGTGGTATGAAGTCGAGAATCTTAAGCAGTATTCT 686
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 242 GATAAGCACTTGGCGGTTCTCAACTCGTGGTATGAAGTTGATAATCTTAAGCAGTATTCT 301
Query 687 CTTTATGGTTTGTATTCAAACCTCAAGAGCTCT-TTAACCAATCAGTTCAATAATTTCTT 745
|||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||
Sbjct 302 CTTTATGGTTTGTATTCAAACCTCAAGAGCTCACTTA-CAAATCAGCTCAATAATTTCTT 360
Query 746 TTGAGCTTCTTGATG-ACTTGTATTTGTTTGTTTGTTTGTTTGTATCACGTAAGTTAATC 804
||||||||||| || | ||||||||||||||||| |||| ||||||||||||||||
Sbjct 361 CTGAGCTTCTTG-TGGAGTTGTATTTGTTTGTTTGCTTGT----ATCACGTAAGTTAATC 415
Query 805 TCTTTG 810
||||||
Sbjct 416 TCTTTG 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5