BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495010
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49510.1 | Symbols: PFD3 | prefoldin 3 | chr5:20080614-20082... 1144 0.0
> AT5G49510.1 | Symbols: PFD3 | prefoldin 3 | chr5:20080614-20082762
FORWARD LENGTH=1009
Length=1009
Score = 1144 bits (619), Expect = 0.0
Identities = 688/719 (96%), Gaps = 13/719 (2%)
Strand=Plus/Plus
Query 1 AGTCGACAGATTCG-AAAACAAT-CGAGAAACCAAGTCGAAGCTTTTAAAACCCTAAATC 58
||||| |||||||| ||||| || | | ||||||||||||||||||||||||||||||||
Sbjct 27 AGTCGTCAGATTCGAAAAAC-ATAC-A-AAACCAAGTCGAAGCTTTTAAAACCCTAAATC 83
Query 59 CCCAAATC--G----GA-A-TCCGATTCGAAGATGTCTTCGTCTTCTCCGAGTGGAAGCG 110
|||||||| | || | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 84 CCCAAATCGGGAACTGAGATTCCGATTCGAAGATGTCGTCGTCTTCTCCGAGTGGAAGCG 143
Query 111 GTAGCGATTTGACTGAGAGAAGAGGAATCCCTGCCGCCAAATTCATTCAAGATGTGGAGA 170
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 144 GTAGTGATTTGACTGAGAGAAGAGGGATCCCTGCCGCCAAATTCATCCAAGATGTGGAGA 203
Query 171 CTTATCTCTCTCAGTCTGGTCTCGATCCTAACTCTGCTCTCGCCTTCCATCAAGAAAGGC 230
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 204 CTTATCTCTCTCAGTCTGGTCTCGATCCTAACTCTGCTCTCGCCTTTCACCAAGAAAGGC 263
Query 231 TTCAGCAATATAAAGTTGTTGAGATGAAGCTTCTTGCTCAACAAAGAGATCTTCAGGCTA 290
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 264 TTCAGCAATATAAAGTTGTTGAGATGAAGCTTCTTGCTCAACAAAGGGATCTTCAGGCTA 323
Query 291 AAATCCCAGATATTGAGAAGTGTTTAGAGGTTGTTGCTACTTTGGAAGCAAGGAAGGGTA 350
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 324 AAATCCCAGATATTGAAAAGTGTTTAGAGGTTGTTGCTACTTTGGAAGCAAAGAAGGGTA 383
Query 351 CTGGTGAGGCGCTTTTAGCCGATTTTGAGGTGTCTGAAGGAATTTATTCACGGGCCTGCA 410
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 384 CTGGTGAGGCGCTCTTAGCTGATTTTGAGGTGTCTGAAGGAATATATTCACGGGCCTGCA 443
Query 411 TTGAAGACACAGACTCAGTGTGTTTGTGGTTGGGAGCTAATGTCATGCTGGAATATTCCT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TTGAAGACACAGACTCAGTGTGTTTGTGGTTGGGAGCTAATGTCATGCTGGAATATTCCT 503
Query 471 GTGAAGAGGCTTCAGCTCTTCTGAAAAACAATCTGGAAAATGCTAAAGCCAGCCTGGAGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GTGAAGAGGCTTCAGCTCTTCTGAAAAACAATCTGGAAAATGCTAAAGCCAGCCTGGAGG 563
Query 531 TTCTCGTAGCTGATTTACAGTTCTTAAGGGATCAAGTCACAGTTACTCAGGTAACTATTG 590
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 564 TTCTTGTAGCTGATTTACAGTTCTTGAGGGATCAAGTCACAGTTACTCAGGTAACTATTG 623
Query 591 CGCGTGTTTATAACTGGGATGTTCATCAAAGGAGGGTTAAACAAGTTACCCCTACTGCTA 650
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CACGTGTTTATAACTGGGATGTTCATCAAAGGAGGGTTAAACAAGTTACCCCTACTGCTA 683
Query 651 TTGCTGCTGCAGATTCATGAACTACAGATCCAAATTATAATCGTGTGGGCTTAAACGAG 709
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 684 TTGCTGTTGCAGATTCATGAACTAGAGATCCAAATTATAATCGTGTGGGCTTAAACGAG 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5