BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495012
Length=2246
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49530.1 | Symbols: | SIN-like family protein | chr5:201005... 2887 0.0
> AT5G49530.1 | Symbols: | SIN-like family protein | chr5:20100579-20104447
FORWARD LENGTH=2429
Length=2429
Score = 2887 bits (1563), Expect = 0.0
Identities = 2077/2311 (90%), Gaps = 92/2311 (4%)
Strand=Plus/Plus
Query 1 CAGGAAGTAAAAATATGGACTTTGATGATGAAGACAAACCAAAAGAGGTTGCCAAAACCC 60
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 141 CAGGAAGTAAAAATATGGACTTTGATGATGATGACAAACCAAAAGAGGTTACCAAAACCC 200
Query 61 GTAGATTCGCTCCTGGCCGTGCCGGAAAG--T----------CTAAACC-GAA---AC-- 102
||||||||||||||||||||||||||||| | ||||||| ||| ||
Sbjct 201 GTAGATTCGCTCCTGGCCGTGCCGGAAAGTCTAAACCCAAACCTAAACCGGAACCCACTG 260
Query 103 C---TAAACCGG-A-A----CCGCCGCAATCACAAACTGAGTCTGTGAGCAAGAGTGAGC 153
| |||||||| | | |||||||| |||||||||||||| |||||||||| |||||
Sbjct 261 CTGATAAACCGGTACAGCCGCCGCCGCAGTCACAAACTGAGTCCGTGAGCAAGACTGAGC 320
Query 154 ATGACGTTGATGCTAAAGGT-GCTGGTC-CTAAGGTTGAAACTGAGGTTTATAATGGCTC 211
||||||||||||||||| | | ||| | ||||||||||||||||||||| |||||||||
Sbjct 321 ATGACGTTGATGCTAAA-TTCGTTGG-CACTAAGGTTGAAACTGAGGTTTGTAATGGCTC 378
Query 212 TGTTAAAATGGAGATTGATTCAAAAGTGGATAAAGAGCCAGAGTTCATGGATACTGAGTT 271
||| || |||||||| ||||||||||| ||||||||||| ||| ||||||| ||||||||
Sbjct 379 TGTGAAGATGGAGATCGATTCAAAAGTCGATAAAGAGCCTGAGATCATGGAAACTGAGTT 438
Query 272 GATTGAGGAAGATGAGCAGCTTCCATTGCAGGA-G-g-a--a-gaagaagaagaag-a-a 323
||| ||||||||| ||||||||||||||||||| | | | | ||||||||||||| | |
Sbjct 439 GATGGAGGAAGATCAGCAGCTTCCATTGCAGGAGGAGAAGGAGGAAGAAGAAGAAGAAGA 498
Query 324 -gaTGTTGTTGTTCGTGAAATCGATGTTTTCTTTAATCCGTCGT-TTGATGCTAATACTA 381
|| ||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||
Sbjct 499 CGACGTTGTTGTTCGTGAAATTGATGTTTTCTTTAAGCCGTC-TATTGATGCTAATACTC 557
Query 382 AGCTTTATGTTCTACAATATCCTCTAAGACCGTCTTGGCGTCCATACGAAATGGATGAAC 441
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 558 AGCTTTATGTTTTACAATATCCTCTAAGACCATCTTGGCGTCCATACGAAATGGATGAAC 617
Query 442 GATGCGAAGAAGTTAGAGTGAATACTTCTACCTCCCAAGTGGAAATTGACTTGTCTATGG 501
| ||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||
Sbjct 618 GTTGCGAAGAAGTTAGAGTGAATCCTTCTACATCGCAAGTGGAAATTGATTTGTCTATGG 677
Query 502 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ATGTTCATTCGAAGAACTATGACTCCAATTTTGGACTAAATATGACTAAGCAGACCTTGA 737
Query 562 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AAACAACATGGAAGCAGCCTCCTACTTTGGATTATGCTGTTGGGGTTCTTTCAGGTGATA 797
Query 622 AGTTACACTTGAATCCTGTTCATGCTGTTGCTCAGCTCCGGCCGTCTATGCAGTATCTTT 681
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 798 AGTTACACTTGAATCCTGTTCATGCTGTTGCCCAGCTCCGGCCGTCTATGCAGTCTCTTT 857
Query 682 CATCCAACGGCaaaaaa-aaaCAAGAAGAATCTACTGAAGAATCTGTCGGAACATCCAAA 740
||||| || |||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 858 CATCCGACAA-AAAAAAGAAACAAGAAGAATCCACTGAAGAATCTGTGGGAACATCCAAA 916
Query 741 AAACAGAACAAGGGAGTGCAG--G-CTTCGACGGATCAGAAACCAATTAACGAAGAAACT 797
|| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 917 AAGCAGAACAAGGGAGTGCAGCAGGCTTCGACGGATCAGAAACCAATTAATGAAGAAACT 976
Query 798 TGGGTTGCACTCAAATATCATGGACTTCAATCCGAATATTGCTCCACATATCTTAACGGG 857
|||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 977 TGGGTTTCACTCAAGTATCATGGACTTCAATCCGAATATTGCTCCAGATATCTTAACGGG 1036
Query 858 ATGATGGCGAATGGGAACTCTTC-ATTAGATTTCAACATGAGCCCGGACGTTTATATCAA 916
||||||||||||||||||||||| || |||||||||||||||||||| | |||||||||
Sbjct 1037 ATGATGGCGAATGGGAACTCTTCGAT-AGATTTCAACATGAGCCCGGGCACTTATATCAA 1095
Query 917 CGAACTGTGCCGTGGGGGAAGCAGCAGAAACTCTGAATCGAAAGAAACATCAAAAAGGGT 976
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1096 CGAACTATGCCGTGGGGGAAGCAGCAGAAACTCTGAATCGAAAGAAACATTAAAAAGGGT 1155
Query 977 CTTGCTTTCCCTACCACTTGAAGAACGTGTGAAAAAGTTGCTCTGCGAGGGATCTCCGTT 1036
|||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1156 CTTGCTCTCCCTACCACTTAAAGAACGTGTGCAAAAGTTGCTCTGCGAGGGATCTCCGTT 1215
Query 1037 GCTTCGATACAGTGTTCTTAAGCATTATGCCCCTGAGTTCTCAGACGAGGATTTCTTAGG 1096
| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1216 GATTCGATACAGTGTTCTTAAACACTATGCTCCTGAGTTCTCAGACGAGGATTTCTTAGG 1275
Query 1097 GGCCCTCCAAGAAGATGGCTGGTTAGTTCAAGGTTTATGGACTCCCAAAACTAAGCTACT 1156
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1276 GGCCCTCCAAGAATATGGCAGGTTAGTTCAAGGTTTATGGACTCCTAAAACTAGGCTACT 1335
Query 1157 GGAACTAGATGAAAACTGTAGAAG-TATCAGGGATTATGTCCTGTCTCTGTTCAGCCAGA 1215
||||||| | ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1336 AAAACTAGACGGGC-CTGTAGAAGCTGCCAGGGATTATGTCCTGTCTCTGTTCAGCCAGA 1394
Query 1216 ATACAACTATAAAGTACTCTGAAGTTGAAGCAACGGGTTTTCAA-AGCGAAAAGATGATA 1274
|||||||||||||||||||||||||||||||||||||| ||| | |||| | |
Sbjct 1395 ATACAACTATAAAGTACTCTGAAGTTGAAGCAACGGGTGA-CAAGAT-GAAACC-T--T- 1448
Query 1275 ATTATG-AAATCTATGTTGACAGTATTTGCCAAAGAAAGGCCTCTGCTAAACGATTGGAA 1333
| ||| ||| |||||||| | ||||||||||||||||| | ||||||| ||||||||
Sbjct 1449 -TGATGGAAAGA-ATGTTGACTGAATTTGCCAAAGAAAGGCATGTGCTAAAAGATTGGAA 1506
Query 1334 GTTCAAAGAGCCCACTGATGTCTCATTCATAAAATCCTACCCGGAGATTGTTAAGGAGCA 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GTTCAAAGAGCCCACTGATGTCTCATTCATAAAATCCTACCCGGAGATTGTTAAGGAGCA 1566
Query 1394 AGATATTTTATGGACGAATAGGAAAAAGATTATAGAGTCAATATTAACCACC-A-G-A-- 1448
||||||||| |||||| ||| || | ||| | || |||| | | ||||| || | | |
Sbjct 1567 AGATATTTTTTGGACGGATAAGAGAGAGAATCTAAAGTCGAGAATAACCGCCCAAGGAGG 1626
Query 1449 AAAA-GTAGAGCTGATAATAGGAGGAATGTCGTTGGCAAAAATTCTTCAGTTACAGTTAA 1507
|||| ||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1627 AAAAAGTAGAGCTGATAAAAGGAGGAATGTTGTTGGCACAAGTTCTTCAGTTACAGTTAA 1686
Query 1508 ACCGGAGGTTCCAACAACCCTCTCGGACAAAGGAGGAAGTTCAAGAAATACGATACCTCG 1567
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 1687 ACCGGAGGTTCCAACAACCCTCTCTGACAAAGGAGGAAGTTCAAAAAATACGATACATCG 1746
Query 1568 TGTTGTTGGACAAAAAATGCCAGAAGAACTTCGGTGGGCGTTACCAAAGGCCTTGAAAAA 1627
||||||| |||| ||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1747 TGTTGTTACACAAGAAATGCCAGAAGAACTTAAGAAGGCGTTACCAAAGGCTTTGAAAAA 1806
Query 1628 GGTGTTTCAAACTCACAAAGTTTGCAGGTATGAGACGATCTGCCAAGGACTTAGGGATCT 1687
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1807 GGTGTTTCAAACTCACAAAGTTTGCCGCTATGAGACGATCTGCCAAGGACTTAGGGATCT 1866
Query 1688 TGCAGTTTCGACATCAAATAATCCAAAAGCTGATTCAGGAATGGCAGTGAATGTGGCGTT 1747
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1867 TGCAGTTTCGACATCGAATAATCCAAAAGCTGATTCAGGAATGGCGGTGAATGTGGCGCT 1926
Query 1748 AGCCGTGGATGCTTACCAGGACGAGCTCAAAGACGTTATAAGTGAAGTGGCTGCTAACAT 1807
|||||||||||||||||||| ||||||| |||||||||||| || ||||||| |||||||
Sbjct 1927 AGCCGTGGATGCTTACCAGGGCGAGCTCGAAGACGTTATAAATGGAGTGGCTACTAACAT 1986
Query 1808 TCACGGGTCTTATGTCTCCATATCATCTCCAGACCATCCTGAATACGATTCTTTGAGGGG 1867
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1987 TCACGGGTCTTATGTCTCCATATCGTCTCCAGACCATCCTGAATATGATTCTTTGAGGGA 2046
Query 1868 AGTGGTGATTAGCCTTTTTTGCGGAACTGGACCTGGAGCAAAGCTTATGAAGGCTGAGGT 1927
|||||| |||||||| || |||| || ||||||| ||||||||||||||||||||||
Sbjct 2047 AGTGGTCATTAGCCTCTTAACCGGATCTCCACCTGGAACAAAGCTTATGAAGGCTGAGGT 2106
Query 1928 ATTTGCAGCAGGCAGGACCAAACTT-AATCGTGAAATCACCAACAACGAATATATAAAGG 1986
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2107 ATTTGCAGCAGGCAGGACCAAACTTGAA-CGTGAAATCACCAACAACGAATATATAAAGG 2165
Query 1987 TGATGCACGATCTCTGTGAAACCAACTCTTCAGGATGGGTTTTACAGAAAGCTCGATGAT 2046
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 TGATGCACGAGATCTGTGAAACCAACTCTTCAGGATGGGTTTTACAGAAAGCTCGATGAT 2225
Query 2047 GAGTTATCATCACTCACAAATCATCATGACTAGATTTTAATGATCTATAAATTTTGATAT 2106
||||| | || | | || |||||||||||||||||||||| |||||||||||||||||
Sbjct 2226 GAGTT-T-AT---T-A-AA-TCATCATGACTAGATTTTAATGGTCTATAAATTTTGATAT 2277
Query 2107 ATCCTAGTAAACGGTTCAGTAattttgagggatttttattttattttccctttttgaaat 2166
|||||||||||||||| || |||| ||| |||||| |||| ||||||||||||
Sbjct 2278 G----AGTAAACGGTTCAGTAGTTATGAGATATTCATATTTTGTTTTTCCTTTTTGAAAT 2333
Query 2167 caaacaaccttttt-CTACTACTCAACTAGAGTTGGT----CA--C-AC-C-AACAGGGG 2216
|||||||||||||| ||| |||||||||||||||||| || | || | |||| ||
Sbjct 2334 CAAACAACCTTTTTTCTATTACTCAACTAGAGTTGGTAAGACAAGCCACACCAACACAGG 2393
Query 2217 AAAATAA-CATAAGAAACAACAAAAGAACTA 2246
||||||| |||||||| ||||||||||||||
Sbjct 2394 AAAATAAACATAAGAAGCAACAAAAGAACTA 2424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111445209900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5