BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495014
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49550.1 | Symbols: BLOS2 | Putative homolog of mammalian BL... 695 0.0
> AT5G49550.1 | Symbols: BLOS2 | Putative homolog of mammalian
BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.
| chr5:20106653-20107191 REVERSE LENGTH=468
Length=468
Score = 695 bits (376), Expect = 0.0
Identities = 422/444 (95%), Gaps = 3/444 (1%)
Strand=Plus/Plus
Query 1 TATCCTCATCAATGGCGGAATCACGAGATGATCTAGCTGAATCGCTACAGAATCTATTCA 60
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 25 TATCCTCATCAATGGCGGATTCACGAGATGATCTAGCTGAATCGCTACAAAATCTATTCA 84
Query 61 CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAATCATCTAGATCTAT 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 85 CGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAACCATCTAGATCTAT 144
Query 121 TGGAGAAGATGAATCAGAGAGTTGCGTCGGAGTACGATGATATGGGTGACGTGGCAGCTG 180
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 145 TGGAGAAGATGAACCTGAGAGTTGCGTCAGAGTACGATGATATGGGTGACGTGGCAGCTG 204
Query 181 GGCTCAGAGTTTTCGCAGAACAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTCGTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 205 GGCTCAGAGTTTTCGCAGAACAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTTGTAG 264
Query 241 GACAAATGGATGCAATCGAGAAACAAGTGTCGGAATTTGAAGCTGTGATCTCTGTTCTAG 300
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 265 GACAAATGGATGCTATCGAGAAACAAGTGTCGGAGTTTGAAGCTGTGATCTCTGTTCTAG 324
Query 301 ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCTTCCTCATCATC 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 325 ATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCATCCTCATCATC 384
Query 361 ATCGTCGCTCTAATGACTCTGTTGGTACAGATTGAGGCATTGTAACAATAATTAATT--- 417
| |||||||||||||| ||||||| |||||| ||| |||||||| ||||||||||||
Sbjct 385 AGCGTCGCTCTAATGATTCTGTTGTTACAGACTGATGCATTGTAGCAATAATTAATTTTT 444
Query 418 ATCGCTACTGAGATTGTTGGAATC 441
||| |||||||||||||||||||
Sbjct 445 ATCATTACTGAGATTGTTGGAATC 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5