BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495015
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49555.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 2955 0.0
AT5G49570.1 | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 | c... 93.5 7e-18
> AT5G49555.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:20107229-20110636 REVERSE LENGTH=1887
Length=1887
Score = 2955 bits (1600), Expect = 0.0
Identities = 1786/1872 (95%), Gaps = 28/1872 (1%)
Strand=Plus/Plus
Query 1 GAAGACTACAATGTGGTGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCGGT 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 GAAGACTACAATGTGGCGCCGGAGCTTCAGTACATTACCGAAGAAGAAATGGGACGCGGT 84
Query 61 GGTGATCGGAGGTGGCCACAACGGATTAACAGCCGCGGCTTACCTGGCACGCGGAGGTCT 120
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 85 GGTGATCGGAGGTGGCCACAACGGATTAACAGCCGCAGCTTACCTAGCACGCGGAGGTCT 144
Query 121 CTCCGTGGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGTGCGGCAGTAACGGAGGAGAT 180
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 145 CTCCGTCGCTGTTCTCGAGCGCCGTCATGTCATCGGTGGCGCGGCAGTGACGGAGGAGAT 204
Query 181 CGTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGAGCTTACTTCGTCCTTGTAT 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 205 CGTTCCTGGATTCAAATTCTCACGCTGCAGTTACCTTCAGGGCTTACTTCGTCCTTGTAT 264
Query 241 CATTAGAGAATTAGAGTTAGGCAGACATGGACTTAAGCTTCTGAAGAGAAGTCCTTCATC 300
|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 265 CATTAGAGAATTGGAGTTAGGTAGACATGGACTTAAGCTTTTGAAGAGAAGTCCTTCATC 324
Query 301 GTTTACACCTTGTTCGGATGGACGTTATCTTCTTCTTGGACCTGATCAAGATCTTAATCA 360
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 325 GTTTACACCTTGTTTAGATGGACGTTATCTTCTGCTTGGACCTGATCAAGATCTTAATCA 384
Query 361 TTCTGAGATTTCAAAGTTCTCCAAACATGATGCTCATGCTTACCCAAGATACGAGAAGCA 420
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 385 TTCTGAGATTTCAAAGTTCTCTAAACATGATGCTGATGCTTACCCAAGATACGAGAAGCA 444
Query 421 GCTAGAGAGGTTTTGTGGATTCATGGATCCTCTTTTGGATGCAACTCCACCTGAATCTCT 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 445 GCTAGAGAGGTTTTGTGGATTCATGGATCCTCTTTTGGATTCAACTCCACCTGAATCTCT 504
Query 481 GCAAGGTGTTTCTTCTTTTAATGATAAGTTGAGCAACAAAATGTACAAATCTGCTTTTTG 540
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 505 GCAAAGTGCCTCTTCTTTTAATGATAAGTTGAGCAACAAAATGTACAAATCTGCTTTCTG 564
Query 541 GGCTCGTTGTCTGCGGCAGGCGGTTTCTCTGGGGCATAAAGATATGGTGTATGATTTTAT 600
|||||||||||| ||||| || |||||| |||||||||||||||||||| | ||||||
Sbjct 565 GGCTCGTTGTCTCCGGCAAGCAGTTTCTTTGGGGCATAAAGATATGGTG---GCTTTTAT 621
Query 601 GGATCTTTTATTGGCCCCAGCTTCAAAAGTTTTGAACAACTGGTTTGAGTCTGATGTCCT 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GGATCTTTTATTGGCACCAGCTTCAAAAGTTTTGAACAACTGGTTTGAGTCTGATGTCCT 681
Query 661 GAAGGCGACTCTTGCCACAGATGCCGTGATTGGATCTACGGCTAGTGTCCATACTCCGGG 720
|||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 682 GAAGGCGAGTCTTGCAACAGATGCTGTGATTGGATCTACGGCCAGTGTCCATACTCCGGG 741
Query 721 AAGTGGATATGTCCTCCTACATCATGTGATGGGAGAAACAGATGGAGAGAAAGGCATTTG 780
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AAGTGGATATGTTCTCCTACATCATGTGATGGGAGAAACAGATGGAGAGAAAGGCATTTG 801
Query 781 GTCTTATGTTGAAGGTGGGATGGGCTCTGTCTCCATGGCTATAGCCAATGCTGCAAAGGA 840
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GTCTTACGTTGAAGGTGGGATGGGCTCTGTCTCCATGGCTATAGCCAATGCTGCAAAGGA 861
Query 841 AGCTGGTGCTGAGATTTTCACAAACGCAGAGGTTTCTGAAATACTAACTGAGGACTCTAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 862 AGCTGGTGCTGAGATTTTCACAAACGCAGAGGTTTCTGAAATACTAACTGAAGACTCTAG 921
Query 901 CATCGTGAAAGGGGTTTTGCTAGCTGATGGTACACGGGTGGAGTCATCGGCTATATTGTC 960
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 922 CATCGTGAAAGGGGTTTTGCTTGCTGATGGTACACGGGTGGAGTCATCGGCTATATTGTC 981
Query 961 CAATGCTACCCCTTACAAAACTTATGTGGAGTTGGTTCCGACCAATGTTCTTCCTGAAAA 1020
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CAATGCGACCCCTTACAGAACTTATGTGGAGTTGGTTCCGACCAATGTTCTTCCTGAAAA 1041
Query 1021 TTTCATCGGTGCTATTAAGAACTCAGATTACAGCTCTGCAACTACCAAGATAAACTTGGC 1080
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1042 TTTCGTCAGTGCTATTAAGAACTCAGATTACAGCTCTGCAACTACCAAAATAAACTTGGC 1101
Query 1081 TGTTGACAAATTACCACAGTTCCAGTGCTGCAACACAAATCATTCAAGTCCAGGTCCAGA 1140
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1102 TGTTGACAAGTTACCACAGTTCCAGTGCTGCAACACAAATCATTCAGGTCCAGGTCCAGA 1161
Query 1141 GCATTTTGGCACTATACACATTGGTGCAGAGAGCATGGACGAGGTTCACTCAGCATGTCA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GCATTTTGGCACTATACACATTGGTGCAGAGAGCATGGACGAGGTTCACTCAGCATGTCA 1221
Query 1201 TGATTCTGAAAATGGCTTACCATCGAGAAGACCAGTGATCGAAATGACTATTCCATCCAC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TGATTCTGAAAATGGCTTACCATCGAGAAGACCAGTGATCGAAATGACTATTCCATCCAC 1281
Query 1261 ACTAGACAACACCATTTCTCCCCCAGGGAAGCATGTAATCAACTTGTTCATCCAATACAC 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1282 ACTAGACAACACCATTTCTCCCCCAGGGAAGCATGTAATCAACTTGTTCATCCAGTACAC 1341
Query 1321 TCCTTACAAGCCATCAGATGGAAACTGGGAAGATCCTACTTACCGAGAAGCATTTGCACA 1380
|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1342 TCCTTACAAGCCCTCAGATGGAAGCTGGGAAGATCCTACTTACCGAGAAGCCTTTGCACA 1401
Query 1381 AAGGTGTTTCAAACTGATTGATGAATATGCACCCGGGTTTAGCTCATCCATCATTAGCTA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 AAGGTGTTTCAAACTGATTGATGAATATGCACCCGGGTTTAGCTCATCCATCATTAGCTA 1461
Query 1441 CGACATGTTGACTCCTCCGGACCTGGAACGGGAAATTGGTCTAACAGGCGGAAACATCTT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 CGACATGTTGACTCCTCCGGACCTGGAACGGGAAATTGGTCTAACAGGCGGAAACATCTT 1521
Query 1501 TCACGGTGCCATGGGATTAGACTCTCTCTTCTTGATGCGCCCTGTGAAAGGATGGTCAAA 1560
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1522 TCACGGTGCCATGGGATTAGACTCTCTCTTCCTGATGCGCCCTGTGAAAGGATGGTCAAA 1581
Query 1561 TTACAGAAGCCCTTTGAAAGGTCTCTACTTGTGCGGCAGCGGAGCTCATCCTGGAGGCGG 1620
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1582 TTACAGAAGCCCTTTGAAAGGTCTCTACTTGTGTGGCAGCGGAGCTCATCCTGGAGGCGG 1641
Query 1621 AGTTATGGGTGCACCTGGAAGAAACGCTGCACATGTTGTTCTTCAAGACTTGAAAAGAAT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 AGTTATGGGTGCACCTGGAAGAAACGCTGCACATGTTGTTCTTCAAGACTTGAAAAGAAT 1701
Query 1681 CTAGCGAGGT-TAATCTCTCAGACTGTGCAATGATAACTCTCATGTGTAAGTTGTTTGCT 1739
|||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1702 CTAGCGAG-TATAATCTC--AGACTGTGCAATGTTAACTCTCATGTGTAAGTTGTTTGTT 1758
Query 1740 ATTGCTTTGAAAA-----G----AGG------CTTACAGAAGCATGGACAC-AGTTGTTA 1783
| |||| |||||| | ||| |||||||| |||||||| ||||| ||
Sbjct 1759 ACTGCTCTGAAAACCTCTGTCGTAGGGAGAGGCTTACAGA--CATGGACAATAGTTGATA 1816
Query 1784 TCAACGAATAATAAGCCCTCCACGTGTAGCTTAAG-TGCTTAAC-CTAATTCAACAAATA 1841
||||||||||||||||| |||||||||||||||| | || | |||||||||||||||
Sbjct 1817 TCAACGAATAATAAGCC-TCCACGTGTAGCTTAACCTAAATATCACTAATTCAACAAATA 1875
Query 1842 TGGAAAGTGCCC 1853
||||||||||||
Sbjct 1876 TGGAAAGTGCCC 1887
> AT5G49570.1 | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 |
chr5:20111859-20116185 REVERSE LENGTH=2438
Length=2438
Score = 93.5 bits (50), Expect = 7e-18
Identities = 61/66 (92%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 1752 AGAGGCTTACAGAAGCATGGACACAGTTGTTATCAACGAATAATAAGCCCTCCACGTGTA 1811
||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 2372 AGAGGCTTACAGACTCATGGTCACAGTTGTTATCAACGAATAATAAGCC-TCCACGTGTA 2430
Query 1812 GCTTAA 1817
|||||
Sbjct 2431 ACTTAA 2436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5