BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495016
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49560.1 | Symbols: | Putative methyltransferase family pro... 1269 0.0
> AT5G49560.1 | Symbols: | Putative methyltransferase family protein
| chr5:20110961-20111785 REVERSE LENGTH=825
Length=825
Score = 1269 bits (687), Expect = 0.0
Identities = 786/830 (95%), Gaps = 22/830 (3%)
Strand=Plus/Plus
Query 1 ATGATTTCT-TTCCCTCTGCGAGACGACGATGAGGAAAACGACAGATACGAAGCTAAAAT 59
|||||| || || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATTACTCTT-CCTCTGCGAGACGACGATGAGGAAAACGACACATACGAAGCTAAAAT 59
Query 60 GCTCCTCAT--------A-GG---CGACGGTGAGAGTTTACCTCCTATTCCTCTGCGTGA 107
||||||||| | || ||||||||||||||||||||||| ||||||||||||
Sbjct 60 GCTCCTCATAGGCGAGAATGGTCTCGACGGTGAGAGTTTACCTCCTACTCCTCTGCGTGA 119
Query 108 CGGTGCACCGGAGCTCCAGAAGTACAACATCCGCTCCATCGAGTCAACAGTCGTGATTCG 167
|||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 120 CGGTGCACTGGAGCTCCAGAAGTATAACATCAGCTCCATCGAGTCAACAGTCGTGATTCG 179
Query 168 TGAGCTGACGTCACAAGGTCTCTCCTTTCAGCTCTGGCCAGCCGCTTCTACATTGGTCAC 227
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 180 TGAGCTGACGTCACAAGGTCTCTCCTTTCAGCTCTGGCCAGCGGCTTCTACTTTCGTCAC 239
Query 228 GTTGCTTGATAACTACCGACGTGACCCTAGCAACAGTCCACTCACCGCCACACTCTCGTC 287
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 240 GTTGCTTGATAACTACCGACGTGACCCTAGCAAGAGTCCACTCACCGCCACACTCTTGTC 299
Query 288 GCTG---AAACCATCGCCGTTGAACATACTCGAGCTCGGATCTGGAACCGGCGTCGTCGG 344
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 300 GCTGAAAAAACCATCGCCGTTGAACATACTCGAGCTCGGATCTGGAACCGGCCTCGTCGG 359
Query 345 GATCGCTGCGGCAATCACTCTCTCTGCTAACGTCACGGTGACGGATCTCCCACACGTCTT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATCGCTGCGGCAATCACTCTCTCTGCTAACGTCACGGTGACGGATCTCCCACACGTCTT 419
Query 405 AGACAATCTCAACTTCAACGCCGAAGCAAACGCTGAAACTGTTGAGAGATTCGGCGGGAA 464
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 AGATAATCTCAACTTCAACGCCGAAGCAAACGCTGAAATTGTTGAGAGATTCGGCGGGAA 479
Query 465 AGTCAACGTGGCACCACTCCGATGGGGAGAAGCTGATGACGTGGAGGAGGTTCTAGGTCG 524
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 480 AGTCAACGTGGCACCACTACGATGGGGAGAAGCTGATGACGT---GGAGGTTCTAGGTCA 536
Query 525 GAACGTTGACTTGATTCTGGCTTCGGACGTGGTGTATCATGACCATCTCTACGAGCCTCT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAACGTTGACTTGATTCTGGCTTCGGACGTGGTGTATCATGACCATCTCTACGAGCCTCT 596
Query 585 CCTCAAAACGCTGCGTTTGATGCAGCTAGAGGGGAAGAGGTTAGTTTTCCTTATGGCTCA 644
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 597 CCTCAAAACGCTGCGTTTGATGCAGCTAGAGGGGAAGAGGTTAATTTTCCTGATGGCGCA 656
Query 645 TCTAAGGAGATGGAAGAAAGAATCTGTCTTCTTCAAGAAAGCTCGAAAGCTCTTCGATGT 704
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 TCTAAGGAGATGGAAGAAAGAATCTGTCTTCTTCAAAAAAGCTCGAAAGCTCTTCGATGT 716
Query 705 TGACGTTATCCACTCTGATGTTCCTCAA-AAAGGTTCTAGAATCGGTGTTGTGGTTTACC 763
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 717 TGACGTTATCCACTCTGATGTTCCTCAAGAAAG-TTCTAGAATCGGTGTTGTGGTTTACC 775
Query 764 GTTTTACTACGAAACAGCCAAATCAGAATGGTCGGATTGTTTCGTGTTAG 813
|||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTTTCACCACGAAACAGCCAAATCAGAATGGTCGGATTGTTTCGTGTTAG 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5