BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495017
Length=2328
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49570.1 | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 | c... 3620 0.0
> AT5G49570.1 | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 |
chr5:20111859-20116185 REVERSE LENGTH=2438
Length=2438
Score = 3620 bits (1960), Expect = 0.0
Identities = 2215/2339 (95%), Gaps = 14/2339 (1%)
Strand=Plus/Plus
Query 1 GGATCAATCAAACTTGAGAGATCGTTTAGGAATTTCAATAATCTGAGAAAATGGTTGCTC 60
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 11 GGATCAAACAAACTTGAGAGATCATTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTC 70
Query 61 GCAAATTCGTCGTCCACCATGAAGATTCAAGCTTCGATGTAGACTACGACACTGAAGATG 120
| ||||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct 71 GGAAATTTGTCGTCCGCCATGAAGATTCGAGCTTCGATGTCGACTACAACACTGAAGATG 130
Query 121 GCCTTGAGGTTTTACGATTTCAAATCTTCTCCCTCACTTTGGTACCTCCTGAAGAACAAA 180
| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 131 GTCTTGAGGTTTTACGATTTCTAATCTTCTCCCTCACTTTAGTTCCTCCTGAAGAACAAA 190
Query 181 AGATCGTTGCGGAAGATGATAATCGATTGGTGTCTGATGAGTCTGATCTCGCTTCTATAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 191 AGATCGTTGCGGAAGATGATAATCGATTGGTGTCTGATGAGTCTGATCTCGCTTCTTTAT 250
Query 241 CCGAGAGACTTCGATTGGTTTCAATTGGAGGAGATTCTGTAGAGAATTCAGATGCGGAAA 300
| |||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 251 CTGAGAGACTTCGATTAGTTTCAGTTGGAGAAGATTCTGTAGAGAACTCAGATGCGGAAA 310
Query 301 TGTTGAAATCAGATGAAGAATTGGCTCGAATGTTGCAGGCAGAAGAAGATGCGATGATGT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 311 TGTTGAAATCAGATGAAGAATTGGCTCGAATGTTGCAGGCAGAAGAAGATGCTATTATGT 370
Query 361 TTCAACAGTTTGTTGCTGCACGAGATAGCGGTGGATTCG-AGGAGAGAATCAGGCCTTAT 419
||||||||||||| ||||||||||||| ||| | ||||| ||| |||||| |||||||||
Sbjct 371 TTCAACAGTTTGTCGCTGCACGAGATAACGGCGAATTCGAAGG-GAGAATTAGGCCTTAT 429
Query 420 GTCAGCCAAGTTCTCATGTATGAAGATCCAGTCCGTCAAGAAGCTGCTCGAAAGACCGTT 479
|| || ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 430 GTTAGTCAAGTTCTCATGTATGAAGATCCAGTCCGCCAAGATGCTGCTCGAAAGACTGTT 489
Query 480 CCTAAAGACGAGCTTGAGGAGAAAGCATTGGTTTCTCTGGCCAAGGAGGGGAATTTCGAG 539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 490 CCTAAAGACGAGCTTGAGGAGAAAGCATTGGTTTCTCTGGCCAAGGAAGGGAATTTTGAG 549
Query 540 CCATCGAAAAAGGAAAGAGACTACGCTTTCCTGCTTCAGCTTCTTTTCTGGTTCAAAAGA 599
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 550 CCATCGAAAGAGGAAAGAGACTACGCTTTCCTGCTTCAGCTTCTTTTCTGGTTCAAAAAA 609
Query 600 TCCTTCAGATGGGTCAATGAACCTCCATGTGACTTTTGTGGTAACAAAACCATAGGCCAG 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 610 TCCTTCAGATGGGTCAATGAACCTCCTTGTGACTTTTGTGGTAACAAAACCATAGGCCAG 669
Query 660 GGGATGGCAAACCCACTTACCTCGGAGCTTGCTTATGGAGCAAATCGAGTTGAAATATAT 719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GGGATGGGAAACCCACTTACCTCGGAGCTTGCTTATGGAGCAAATCGAGTTGAAATATAT 729
Query 720 CGCTGTACCATGTGTCCAACAATTACTCGATTCCCTCGGTACAACGATCCACTAAAGCTC 779
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 730 CGCTGTACCATGTGTCCAACAACTACTCGATTCCCTCGGTACAACGATCCGCTAAAGCTC 789
Query 780 GTAGAAACAAAGAAAGGTCGTTGCGGAGAGTGGGCGAACTGCTTTACGCTATACTGCCGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GTAGAAACAAAGAAAGGTCGTTGCGGAGAGTGGGCGAACTGCTTTACGCTATACTGCCGC 849
Query 840 TCGTTTGGCTATGATTCTCGTTTGATAATGGACTTCACAGATCACGTCTGGACAGAATGC 899
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 850 ACGTTTGGCTATGATTCTCGTTTGATAATGGACTTCACAGATCACGTGTGGACAGAATGC 909
Query 900 TACTCTCATTCTTTAAAGAGATGGATCCATCTTGACCCTTGTGAAGGAGTGTATGACAAA 959
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 910 TACTCTCACTCGTTAAAGAGGTGGATCCATCTTGACCCTTGTGAAGGAGTGTATGATAAA 969
Query 960 CCCATGTTATATGAGAAAGGATGGAACAAAAAATTGAATTATGTCATTGCGATTTCCAAG 1019
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 970 CCCATGTTATATGAGAAAGGATGGAATAAAAAATTGAATTATGTCATTGCGATTTCTAAG 1029
Query 1020 GACGGGGTTTGTGATGTTACCAAGCGATATACAAAGAAATGGCATGAGGTTTTATCTAGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GACGGGGTTTGTGATGTTACCAAGCGATATACAAAGAAATGGCATGAGGTTTTATCTAGA 1089
Query 1080 AGAACTCTCACAACTGAATCATCTTTGCAAGATGGTCTTCGAACCCTGACAAGGGAACGG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGAACTCTCACAACTGAATCATCTTTGCAAGATGGTCTTCGAACCCTGACAAGGGAACGA 1149
Query 1140 CGAAGTAGCTTAATGGACGAATCTTTACCTGAGCTTGAATTCCGAGACAGAAAAGAGCAG 1199
||| ||||||||||| |||||| || || |||||||||| ||||||||||| ||||||
Sbjct 1150 CGACGTAGCTTAATGTTTGAATCTCTATCTAAGCTTGAATTACGAGACAGAAATGAGCAG 1209
Query 1200 GAAGAACTCGAGAGAAATCTGCATTCCCCAGATGATGCCTCAGTTTCTTTACCCGGAAGG 1259
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1210 GAAGAACTAGAGAGAAATCTGCATTCCGCAGATAATGCCTCAGTTTCTTTACCCGGAAGG 1269
Query 1260 CAAAGTGGGGACAGGGAATGGCGCATTATGAGATCAGAATTTGGTTCAGACGAAAACTCC 1319
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1270 CAAAGTGGGGACAGGGAATGGCGTATTATGAGATCAGAATTTGGTTCAGACGAAAACTCA 1329
Query 1320 TCTGTCAGCTCTTCCTCTTGCCCAGTTCGCAAATGCGTTGATGACCATGTGACCAACATT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TCTGTCAGCTCTTCCTCTTGCCCAGTTCGCAAATGCGTTGATGACCATGTGACCAACATT 1389
Query 1380 TATGACTCGTTTCTGCCTATCCTGACTCAGTTCGTTGAGGACGGCTTACCCGTAGCAAGA 1439
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1390 TATGACTCGTTTCTACCTATCCTTACTCAGTTCGTTGAGGACGGCTTACCTGTAGCAAGA 1449
Query 1440 GCAATTGAGGTACTTAAGATGATCAAGCAAGTCCTAGTGGATCTAAAGAATACGCCTTAC 1499
||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1450 ACAAATGAGGTACTTAAGATGATCAAGCAAGTCCTAGTGGATCTGAAGAATGCGCCTTAC 1509
Query 1500 AAAACGAGGAAGGCTCGCTTGACTTTAGATTCAGATAGCTCAAGTTCATTCCCAGAGCAG 1559
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1510 AAAACAAGGAAGGCTCGATTGACTTTAGATTCAGATAACTCAAGTTCATTCCCGGAGCAG 1569
Query 1560 TTTCTGCCCGCACTAGGTGATTTGCTTCTCGCTCTTTCTTTAAAGAGCGAGCGAGACACA 1619
||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1570 TTTCTTCCCGCACTAGGCGATTTGCTTCTCGCTCTTTCTTTAAAGAGCGAGAGAGACACA 1629
Query 1620 AACGATAAAAGTGTTACACTATGCTTGGACGGGAAACCT-ACAAAAACTGCTATAGCATT 1678
|||| ||||||||| ||| ||| | | ||||||||| || || |||||||||||||||||
Sbjct 1630 AACGGTAAAAGTGTCACAATATCCGTAGACGGGAAA-CTCACTAAAACTGCTATAGCATT 1688
Query 1679 GCCAGTTGCATTGGACGCTTTGAGGGAACTGGTCGCTGACCTCAGCAAATGCCAAAACTT 1738
|||||||||||||||||| || |||||||| || |||||||||||||||| |||||||||
Sbjct 1689 GCCAGTTGCATTGGACGCGTTAAGGGAACTTGTTGCTGACCTCAGCAAATACCAAAACTT 1748
Query 1739 AAACAAAGATTCACTGTCTTTTCCACTTCTTAAACAGAACAGGGTATACTCTGGTTCTGT 1798
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1749 AAACAAAGATTCACTGTCTTTTCCACTTGTTAAACAGAACAGGGTATGCTCTGGTTCTGT 1808
Query 1799 CCTCGCAAGTGGTGAAGAGCTTCCTTCTGGCATTGCAACCGCAGCTTTTGATGGAATCCA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CCTCGCAAGTGGTGAAGAGCTTCCTTCTGGCATTGCAACCGCAGCTTTTGATGGAATCCA 1868
Query 1859 AGAATCCAAATGGGAAGAACCAAATGGTGCAAAAGGCTGTTGGATCGTGTACAAAACACT 1918
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 AGAGTCCAAATGGGAAGAACCAAATGGTGCAAAAGGCTGTTGGATCGTGTACAAAACACT 1928
Query 1919 CTACAACCAGATGCACCAACTCATAGCATACGAGA-TCATGTCTGCAAATGATGCCCCAG 1977
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 1929 CTACAACCAGATGCACCAACTCATAGCATACGA-ACTCATGTCTGCTAATGATGCCCCAG 1987
Query 1978 AGAGAGACCCCAAAGATTGGGTTCTTGAAGGGAGTAACGATGGTGGATCGACATGGTGTG 2037
|||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 1988 AGAGAGACCCCAAAGATTGGATTCTTGAAGGAAGTAACGATGGTGGTTCGACATGGTGTG 2047
Query 2038 TTCTAGACAAGCAAACTAGTCAGGTATTCGAGGAGCGGTTCCAACGCAAATCCTACAAAA 2097
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2048 TCCTAGACAAGCAAACTAGTCAGGTATTCGAGGAACGGTTCCAACGCAAATCCTACAAAA 2107
Query 2098 TAACAACACCTGGATTCCAAGCAAATCTTTTCAGGTTCCGGTTTTTAAGTGTACGAGACG 2157
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TAACTACACCTGGATTCCAAGCAAATCTTTTCAGGTTCCGGTTTTTAAGTGTACGAGACG 2167
Query 2158 TGAATTCGACCTCGAGACTACAACTAGGGAGCATCGATCTGTACAGAAGCCACCAATAAT 2217
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 2168 TGAATTCGACCTCGAGACTACAACTAGGGAGCATCGATCTGTACAGAAGTCACCAGTGAT 2227
Query 2218 TCAA-G-T--AT----GCACATCAAATGTATAACTGTTCCAAAAACATCAATTTGTTTTG 2269
| || | | || ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2228 TTAATGATGCATTCATGCACATCAAATGTATAAATATTCCAAAAACATCAATTTGTTTTG 2287
Query 2270 TCTTCACTTTGTGCAGATTGATGTATTCCTTGTACGTGAGGGAATTGGCCTTTGTTATT 2328
|||||||||| |||| ||||||||||||| | | |||||||||||||||||||| ||||
Sbjct 2288 TCTTCACTTTCTGCACATTGATGTATTCCGTATTCGTGAGGGAATTGGCCTTTGCTATT 2346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115561654590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5