BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495021 Length=1001 Score E Sequences producing significant alignments: (Bits) Value AT5G49620.2 | Symbols: MYB78 | myb domain protein 78 | chr5:201... 1055 0.0 AT1G48000.1 | Symbols: MYB112, AtMYB112 | myb domain protein 11... 322 4e-87 > AT5G49620.2 | Symbols: MYB78 | myb domain protein 78 | chr5:20137396-20139529 REVERSE LENGTH=1206 Length=1206 Score = 1055 bits (571), Expect = 0.0 Identities = 663/706 (94%), Gaps = 12/706 (2%) Strand=Plus/Plus Query 304 AGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACTGATAACGAGATCAAAAACTAT 363 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 491 AGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACGGATAACGAGATCAAAAACTAT 550 Query 364 TGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCAACAA 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 551 TGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCAACAA 610 Query 424 TTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTCGTAGAGCGTATCCAAGCCGCC 483 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 611 TTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTCGTAGAAAGGATCCAAGCCGCG 670 Query 484 TCTA-CGAGGTTTGTTTCCACGTCCTCTTGCGTCACCAACTCCTCAGATCAGTTCGTGGT 542 || | || ||| |||||||| ||| ||||||||||||| ||||||||||||||||||| | Sbjct 671 TCCATCG-GGTCTGTTTCCATGTCATCTTGCGTCACCACCTCCTCAGATCAGTTCGTGAT 729 Query 543 caacaacaacaacaccaacaacaTGGA-ACATTTGGGTTTTATAAGTAACCCTAATGGTT 601 |||||||||||||||||||||| |||| | |||||| ||| || |||||||||||||||| Sbjct 730 CAACAACAACAACACCAACAACGTGGATA-ATTTGGCTTTAATGAGTAACCCTAATGGTT 788 Query 602 ACATCACGCCGGATAATTCCAACGTGGCAGTATCTCCTGTATCAGATTTGTCGGATTGTC 661 ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| Sbjct 789 ACATCACGCCGGATAATTCCAGCGTGGCAGTATCTCCTGTATCAGATTTGACGGAGTGTC 848 Query 662 ATA-TGAGTAGTGAAGTGGGGAAGATTGGTCAGGATCAGAATTTGGTGGATCCACAAAT- 719 | | |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 849 A-AGTGAGTAGTGAAGTGTGGAAGATTGGTCAGGATGAGAATTTGGTGGATCCAAAAATG 907 Query 720 ATCATCGCAGAATTATTTGGATAATAACTGTGGACTATTAAACGGAG-TT--ACGAAGAT 776 | |||||| ||||||| ||||||||| | |||||||||||||||||| || |||||||| Sbjct 908 A-CATCGCCGAATTATATGGATAATAGCAGTGGACTATTAAACGGAGATTTTACGAAGAT 966 Query 777 GCAAGATCAAAGTGACCTTAATTGGTTTGAAAATGTTAATGGGATGATACCTAATTATTC 836 |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| Sbjct 967 GCAAGATCAAAGTGACCTTAATTGGTTTGAAAATATTAATGGGATGGTACCAAATTATTC 1026 Query 837 GGACAGTTTTTGGAACATTGGAAATGATGAAGACTTCTGGCTCTTACAACAACATCAACA 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1027 GGACAGTTTTTGGAACATTGGAAATGATGAAGACTTCTGGCTCTTACAACAACATCAACA 1086 Query 897 AGTCCTCGACAATGGAAGCTTCTGAATAGACAAGAAGCTATTATACAAAGTAAAGGGAAA 956 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1087 AGTCCACGACAATGGAAGCTTCTGAATAGACAAGAAGCTATTTTACAAAGTAAAGGGAAA 1146 Query 957 ATACAAAGCTTCTGAATT-AAAAGTGTGAAAGGAGTTTGTTATAAA 1001 |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 1147 ATACAAAGCTTCTGAATTTAAAAGTGTGAAAGGAATTTGTTATAAA 1192 Score = 425 bits (230), Expect = 3e-118 Identities = 281/306 (92%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 1 ATGGATGACAAAGCAAGAAGCTTAAACATCAACAAAAACATGGAGGATTTCGCGAACGTG 60 |||| |||||||| ||| |||||||| |||||||| ||||||||||| ||| |||| ||| Sbjct 146 ATGGGTGACAAAGGAAGGAGCTTAAAGATCAACAAGAACATGGAGGAATTCACGAAAGTG 205 Query 61 GAAGAAGAAATATACCTAAGAAGAGGTCCATGGACCA-TTGAGGAAGATTTCGAGCTCAT 119 ||||||||||| || |||| ||||||||||||| || ||||||||||||| |||||||| Sbjct 206 GAAGAAGAAATGGACGTAAGGAGAGGTCCATGGA-CAGTTGAGGAAGATTTAGAGCTCAT 264 Query 120 CAATTACATTGCTACTCATGGAGAAGGTCGATGGAACTCTCTCGCTCGTTGCGCAGGACT 179 |||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||| Sbjct 265 CAATTACATTGCTAGTCATGGTGAAGGTCGATGGAACTCTCTCGCTCGTTGCGCCGAACT 324 Query 180 CAAAAGGACCGGAAAAAGCTGCAGACTTCGGTGGCTAAACTATCTTCGACCAGATGTCCG 239 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || Sbjct 325 CAAAAGGACCGGAAAAAGCTGCAGACTTCGGTGGCTGAACTATCTCCGACCAGATGTGCG 384 Query 240 CCGTGGAAACATAACCCTCGAAGAACAACTCTTGATTCTTGAACTTCACTCCCGTTGGGG 299 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 385 CCGTGGAAACATAACCCTCGAAGAACAACTCTTGATTCTTGAACTTCACACACGTTGGGG 444 Query 300 TAATAG 305 ||||| Sbjct 445 CAATAG 450 > AT1G48000.1 | Symbols: MYB112, AtMYB112 | myb domain protein 112 | chr1:17704179-17706460 REVERSE LENGTH=905 Length=905 Score = 322 bits (174), Expect = 4e-87 Identities = 330/404 (82%), Gaps = 16/404 (4%) Strand=Plus/Plus Query 67 GAAATATACCTAAGAAGAGGTCCATGGACCATTGAGGAAGATTTCG-AGCTCATCAATTA 125 |||||| | |||| |||||||||||||| | || ||||| | | ||||| ||| ||| Sbjct 168 GAAATAGAAATAAGGAGAGGTCCATGGACTGTGGAAGAAGACAT-GAAGCTCGTCAGTTA 226 Query 126 CATTGCTAC-TCATGGAGAAGGTCGATGGAACTCTCTCGCTCGTTGC-GCAGGACTCAAA 183 |||| || | ||| || ||||| |||||||||| ||| |||||| | || ||||| || Sbjct 227 CATTTCT-CTTCACGGTGAAGGAAGATGGAACTCCCTCTCTCGTT-CTGCTGGACTGAAT 284 Query 184 AGGACCGGAAAAAGCTGCAGACTT-CGGTGGCTAAACTATCTTCGACCAGATGTCCGCCG 242 || || || ||||| |||||| || ||||||||||| ||||| || || ||| ||||||| Sbjct 285 AGAACGGGGAAAAGTTGCAGA-TTGCGGTGGCTAAATTATCTCCGGCCGGATATCCGCCG 343 Query 243 TGGAAACATAACCC-TCGAAGAACAACTCT-TGATTCTTGAACTTCACTCCCGTTGGGGT 300 |||| ||||| ||| || |||||||| | | | || |||||||| || || |||||||| Sbjct 344 TGGAGACATATCCCTTC-AAGAACAA-TTTATCATCCTTGAACTCCATTCTCGTTGGGGA 401 Query 301 AATAGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACTGATAACGAGATCAAA-AA 359 ||| | ||||| |||||||| ||| ||||||| |||||||| ||||||||||| ||| || Sbjct 402 AATCGGTGGTCAAAGATTGCTCAACATTTACCGGGAAGAACAGATAACGAGAT-AAAGAA 460 Query 360 CTATTGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCA 419 |||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || Sbjct 461 TTATTGGAGAACACGTGTTCAAAAGCATGCAAAACTTCTAAAATGTGACGTGAACAG-CA 519 Query 420 A-CAATTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTC 462 | ||||| ||||||||||| || |||| ||||||||||| ||| Sbjct 520 AGCAATTCAAAGACACCATCAAACATCTCTGGATGCCTCGTCTC 563 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49028527472 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5