BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495021
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49620.2 | Symbols: MYB78 | myb domain protein 78 | chr5:201... 1055 0.0
AT1G48000.1 | Symbols: MYB112, AtMYB112 | myb domain protein 11... 322 4e-87
> AT5G49620.2 | Symbols: MYB78 | myb domain protein 78 | chr5:20137396-20139529
REVERSE LENGTH=1206
Length=1206
Score = 1055 bits (571), Expect = 0.0
Identities = 663/706 (94%), Gaps = 12/706 (2%)
Strand=Plus/Plus
Query 304 AGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACTGATAACGAGATCAAAAACTAT 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 491 AGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACGGATAACGAGATCAAAAACTAT 550
Query 364 TGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCAACAA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCAACAA 610
Query 424 TTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTCGTAGAGCGTATCCAAGCCGCC 483
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 611 TTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTCGTAGAAAGGATCCAAGCCGCG 670
Query 484 TCTA-CGAGGTTTGTTTCCACGTCCTCTTGCGTCACCAACTCCTCAGATCAGTTCGTGGT 542
|| | || ||| |||||||| ||| ||||||||||||| ||||||||||||||||||| |
Sbjct 671 TCCATCG-GGTCTGTTTCCATGTCATCTTGCGTCACCACCTCCTCAGATCAGTTCGTGAT 729
Query 543 caacaacaacaacaccaacaacaTGGA-ACATTTGGGTTTTATAAGTAACCCTAATGGTT 601
|||||||||||||||||||||| |||| | |||||| ||| || ||||||||||||||||
Sbjct 730 CAACAACAACAACACCAACAACGTGGATA-ATTTGGCTTTAATGAGTAACCCTAATGGTT 788
Query 602 ACATCACGCCGGATAATTCCAACGTGGCAGTATCTCCTGTATCAGATTTGTCGGATTGTC 661
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 789 ACATCACGCCGGATAATTCCAGCGTGGCAGTATCTCCTGTATCAGATTTGACGGAGTGTC 848
Query 662 ATA-TGAGTAGTGAAGTGGGGAAGATTGGTCAGGATCAGAATTTGGTGGATCCACAAAT- 719
| | |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 849 A-AGTGAGTAGTGAAGTGTGGAAGATTGGTCAGGATGAGAATTTGGTGGATCCAAAAATG 907
Query 720 ATCATCGCAGAATTATTTGGATAATAACTGTGGACTATTAAACGGAG-TT--ACGAAGAT 776
| |||||| ||||||| ||||||||| | |||||||||||||||||| || ||||||||
Sbjct 908 A-CATCGCCGAATTATATGGATAATAGCAGTGGACTATTAAACGGAGATTTTACGAAGAT 966
Query 777 GCAAGATCAAAGTGACCTTAATTGGTTTGAAAATGTTAATGGGATGATACCTAATTATTC 836
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 967 GCAAGATCAAAGTGACCTTAATTGGTTTGAAAATATTAATGGGATGGTACCAAATTATTC 1026
Query 837 GGACAGTTTTTGGAACATTGGAAATGATGAAGACTTCTGGCTCTTACAACAACATCAACA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GGACAGTTTTTGGAACATTGGAAATGATGAAGACTTCTGGCTCTTACAACAACATCAACA 1086
Query 897 AGTCCTCGACAATGGAAGCTTCTGAATAGACAAGAAGCTATTATACAAAGTAAAGGGAAA 956
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1087 AGTCCACGACAATGGAAGCTTCTGAATAGACAAGAAGCTATTTTACAAAGTAAAGGGAAA 1146
Query 957 ATACAAAGCTTCTGAATT-AAAAGTGTGAAAGGAGTTTGTTATAAA 1001
|||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1147 ATACAAAGCTTCTGAATTTAAAAGTGTGAAAGGAATTTGTTATAAA 1192
Score = 425 bits (230), Expect = 3e-118
Identities = 281/306 (92%), Gaps = 2/306 (1%)
Strand=Plus/Plus
Query 1 ATGGATGACAAAGCAAGAAGCTTAAACATCAACAAAAACATGGAGGATTTCGCGAACGTG 60
|||| |||||||| ||| |||||||| |||||||| ||||||||||| ||| |||| |||
Sbjct 146 ATGGGTGACAAAGGAAGGAGCTTAAAGATCAACAAGAACATGGAGGAATTCACGAAAGTG 205
Query 61 GAAGAAGAAATATACCTAAGAAGAGGTCCATGGACCA-TTGAGGAAGATTTCGAGCTCAT 119
||||||||||| || |||| ||||||||||||| || ||||||||||||| ||||||||
Sbjct 206 GAAGAAGAAATGGACGTAAGGAGAGGTCCATGGA-CAGTTGAGGAAGATTTAGAGCTCAT 264
Query 120 CAATTACATTGCTACTCATGGAGAAGGTCGATGGAACTCTCTCGCTCGTTGCGCAGGACT 179
|||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 265 CAATTACATTGCTAGTCATGGTGAAGGTCGATGGAACTCTCTCGCTCGTTGCGCCGAACT 324
Query 180 CAAAAGGACCGGAAAAAGCTGCAGACTTCGGTGGCTAAACTATCTTCGACCAGATGTCCG 239
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 325 CAAAAGGACCGGAAAAAGCTGCAGACTTCGGTGGCTGAACTATCTCCGACCAGATGTGCG 384
Query 240 CCGTGGAAACATAACCCTCGAAGAACAACTCTTGATTCTTGAACTTCACTCCCGTTGGGG 299
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 385 CCGTGGAAACATAACCCTCGAAGAACAACTCTTGATTCTTGAACTTCACACACGTTGGGG 444
Query 300 TAATAG 305
|||||
Sbjct 445 CAATAG 450
> AT1G48000.1 | Symbols: MYB112, AtMYB112 | myb domain protein
112 | chr1:17704179-17706460 REVERSE LENGTH=905
Length=905
Score = 322 bits (174), Expect = 4e-87
Identities = 330/404 (82%), Gaps = 16/404 (4%)
Strand=Plus/Plus
Query 67 GAAATATACCTAAGAAGAGGTCCATGGACCATTGAGGAAGATTTCG-AGCTCATCAATTA 125
|||||| | |||| |||||||||||||| | || ||||| | | ||||| ||| |||
Sbjct 168 GAAATAGAAATAAGGAGAGGTCCATGGACTGTGGAAGAAGACAT-GAAGCTCGTCAGTTA 226
Query 126 CATTGCTAC-TCATGGAGAAGGTCGATGGAACTCTCTCGCTCGTTGC-GCAGGACTCAAA 183
|||| || | ||| || ||||| |||||||||| ||| |||||| | || ||||| ||
Sbjct 227 CATTTCT-CTTCACGGTGAAGGAAGATGGAACTCCCTCTCTCGTT-CTGCTGGACTGAAT 284
Query 184 AGGACCGGAAAAAGCTGCAGACTT-CGGTGGCTAAACTATCTTCGACCAGATGTCCGCCG 242
|| || || ||||| |||||| || ||||||||||| ||||| || || ||| |||||||
Sbjct 285 AGAACGGGGAAAAGTTGCAGA-TTGCGGTGGCTAAATTATCTCCGGCCGGATATCCGCCG 343
Query 243 TGGAAACATAACCC-TCGAAGAACAACTCT-TGATTCTTGAACTTCACTCCCGTTGGGGT 300
|||| ||||| ||| || |||||||| | | | || |||||||| || || ||||||||
Sbjct 344 TGGAGACATATCCCTTC-AAGAACAA-TTTATCATCCTTGAACTCCATTCTCGTTGGGGA 401
Query 301 AATAGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACTGATAACGAGATCAAA-AA 359
||| | ||||| |||||||| ||| ||||||| |||||||| ||||||||||| ||| ||
Sbjct 402 AATCGGTGGTCAAAGATTGCTCAACATTTACCGGGAAGAACAGATAACGAGAT-AAAGAA 460
Query 360 CTATTGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCA 419
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 461 TTATTGGAGAACACGTGTTCAAAAGCATGCAAAACTTCTAAAATGTGACGTGAACAG-CA 519
Query 420 A-CAATTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTC 462
| ||||| ||||||||||| || |||| ||||||||||| |||
Sbjct 520 AGCAATTCAAAGACACCATCAAACATCTCTGGATGCCTCGTCTC 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49028527472
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5