BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495022
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49630.1 | Symbols: AAP6 | amino acid permease 6 | chr5:2014... 1360 0.0
> AT5G49630.1 | Symbols: AAP6 | amino acid permease 6 | chr5:20142470-20146498
REVERSE LENGTH=1714
Length=1714
Score = 1360 bits (736), Expect = 0.0
Identities = 812/850 (96%), Gaps = 0/850 (0%)
Strand=Plus/Plus
Query 1 CTACCTTTGGCCGCTTCTTCTTATTTTATCATAACTAAGCTCAAGAGCAAACGATAGATG 60
|||||||||||| |||||||||||||||||||| |||||||||| | ||| |||||||||
Sbjct 1 CTACCTTTGGCCTCTTCTTCTTATTTTATCATAGCTAAGCTCAAAAACAATCGATAGATG 60
Query 61 GAGAAGAAGAAGAGCATGTCCGTTGAACAGAGCTACACGGATCATGAGATTGGCGATACT 120
||||||||||||||||||| |||||||||||||| | |||| ||||| ||||||||||||
Sbjct 61 GAGAAGAAGAAGAGCATGTTCGTTGAACAGAGCTTCCCGGAGCATGAAATTGGCGATACT 120
Query 121 AACAAAAACTTTGACGATGATGGCCGCGAGAAAAGATCAGGGACATGGATGACCGGGAGT 180
||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||
Sbjct 121 AACAAAAACTTTGACGAGGATGGCCGCGACAAAAGAACTGGGACATGGATGACCGGGAGT 180
Query 181 GCACACATAATAACAGCCGTGATAGGGTCGGGAGTGTTGTCGTTGGCATGGGCAATCGCA 240
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 GCACACATAATAACGGCCGTGATAGGGTCGGGAGTGTTGTCTTTGGCGTGGGCAATCGCA 240
Query 241 CAACTTGGATGGGTGGCAGGACCCGCCGTACTAATGGCTTTTTCGTTCATAACATATTTT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CAACTTGGATGGGTGGCAGGACCCGCCGTACTAATGGCTTTTTCTTTCATAACATATTTT 300
Query 301 ACATCAACCATGCTTGCCGATTGTTACCGTTCCCCGGACCCTGTTACCGGCAAACGAAAC 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 ACATCAACCATGCTTGCCGATTGTTACCGTTCCCCTGACCCTGTTACCGGCAAACGCAAC 360
Query 361 TATACCTACATGGAAGTTGTCCGATCCTATTTAGGAGGAAGAAAAGTGCAATTATGTGGA 420
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TACACCTACATGGAAGTTGTCCGATCCTATCTAGGAGGAAGAAAAGTGCAATTATGTGGA 420
Query 421 TTGGCTCAATACGGGAATCTGATTGGAATAACAATCGGCTACACAATCACAGCTTCAATA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGGCTCAATACGGGAATCTGATTGGAATAACAATCGGCTACACAATCACAGCTTCAATT 480
Query 481 AGCATGGTGGCGGTGAAGAGGTCGAATTGTTTCCACAAAAATGGGCATAATGTGAAATGT 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AGCATGGTGGCAGTGAAGAGGTCGAATTGTTTCCACAAAAATGGGCATAATGTTAAATGT 540
Query 541 GCCAGTTCAAACACTCCCTTCATGATCGTATTTGCAATCATCCAAATTATTCTTAGCCAA 600
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 GCCACTTCAAACACTCCCTTCATGATCATATTTGCAATCATCCAAATTATTCTTAGCCAA 600
Query 601 ATCCCAAATTTCCATAACCTCTCGTGGCTCTCCATTCTAGCGGCCGTAATGTCCTTTTGT 660
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 601 ATCCCAAATTTCCATAACCTCTCTTGGCTCTCCATTCTTGCGGCCGTAATGTCCTTTTGT 660
Query 661 TACGCCTCCATCGGTGTTGGTCTCTCCATCGCCAAAGCGGCTGGTGGCGGTGAGCATGTA 720
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 661 TATGCCTCCATCGGTGTTGGTCTCTCCATCGCCAAAGCGGCGGGTGGCGGTGAGCACGTA 720
Query 721 AGAACAACACTGACAGGAGTTACGGTCGGGGTTGATGTCTCGGGTGCCGATAAAGTATGG 780
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||
Sbjct 721 AGAACAACACTGACAGGAGTTACGGTCGGGATTGATGTATCGGGTGCCGAGAAAATATGG 780
Query 781 AGAACGTTCCAAGCGATTGGGGACATTGCATTTGCCTATGCATACTCAACTGTGCTCATT 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 781 AGAACGTTCCAAGCGATTGGGGACATTGCATTTGCCTACGCATACTCAACTGTTCTCATT 840
Query 841 GAAATACAGG 850
||||||||||
Sbjct 841 GAAATACAGG 850
Score = 1134 bits (614), Expect = 0.0
Identities = 687/723 (95%), Gaps = 2/723 (0%)
Strand=Plus/Plus
Query 928 GACACCCTGAAAGCAGGTCCTCCATCAGAGAACAAAGCCATGAAAAGAGCAAGCCTTGTG 987
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 850 GACACCTTGAAAGCAGGTCCTCCATCGGAGAACAAAGCCATGAAAAGAGCAAGCCTTGTG 909
Query 988 GGTGTCTCCACAACGACCTTCTTCTACATGTTATGTGGTTGTGTTGGTTACGCTGCCTTT 1047
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 910 GGTGTCTCCACAACAACCTTCTTCTACATGTTATGCGGTTGTGTTGGTTACGCTGCCTTT 969
Query 1048 GGAAATGATGCTCCCGGAAATTTCCTAACCGGTTTTGGTTTCTATGAGCCATTCTGGCTA 1107
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 970 GGAAATGATGCTCCTGGAAATTTCCTAACTGGTTTTGGTTTCTATGAGCCATTCTGGCTA 1029
Query 1108 ATCGACTTTGCTAATGTTTGTATCGCGGTGCATCTTGTCGGTGCCTACCAAGTCTTTTGT 1167
||||||||||| ||||| || ||||| ||||| ||| |||| ||||||||||||||||||
Sbjct 1030 ATCGACTTTGCCAATGTCTGCATCGCCGTGCACCTTATCGGCGCCTACCAAGTCTTTTGT 1089
Query 1168 CAGCCCATCTTTCAGTTCGTAGAGAGCCAGAGCGCGAAACGTTGGCCAGATAACAAGTTC 1227
|| || || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1090 CAACCAATTTTTCAGTTCGTAGAGAGCCAGAGCGCGAAACGTTGGCCTGATAACAAGTTT 1149
Query 1228 ATTACAGGAGAATACAAAATCCCTGTCCCTTGCTGTGGTGAATTTAGTATCAACTTCCTC 1287
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1150 ATTACAGGAGAATACAAAATCCATGTCCCTTGCTGTGGTGATTTTAGTATCAACTTCCTC 1209
Query 1288 AGGTTGGTTTGGAGGACTTCATATGTTGTGGTTACCGCGGTTGTAGCCATGATCTTCCCT 1347
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1210 AGATTGGTATGGAGGACTTCATATGTTGTGGTCACCGCGGTTGTAGCCATGATCTTCCCT 1269
Query 1348 TTCTTCAACGATTTCTTGGGTCTTATTGGAGCAGCTTCCTTCTGGCCTTTGACTGTTTAC 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TTCTTCAACGATTTCTTGGGTCTTATTGGAGCAGCTTCCTTCTGGCCTTTGACTGTTTAC 1329
Query 1408 TTTCCCATTGAGATGCATATTGCTCAGAAGAAGATACCGAAATTCTCTTTCACTTGGACT 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TTTCCCATTGAGATGCATATTGCTCAGAAGAAGATACCGAAATTCTCTTTCACTTGGACT 1389
Query 1468 TGGCTAAAAATCTTGAGTTGGGCTTGTTTCGTCGTATCCATAGTTGCTGCAGCGGGATCA 1527
||| ||||||||||||||||| |||||||| | || ||| | ||||||||||| ||||||
Sbjct 1390 TGGTTAAAAATCTTGAGTTGGACTTGTTTCATTGTGTCCCTCGTTGCTGCAGCCGGATCA 1449
Query 1528 GTGCAAGGACTCATAACAA-GTCTCAAGGATTTCAAGCCTTTCCAGGCTCCTTAGTGAAA 1586
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 GTGCAAGGACTCATA-CAAAGTCTCAAGGATTTCAAGCCTTTCCAGGCTCCTTAGTGAAA 1508
Query 1587 ATATGTGTTCTCACCAACGTCTCCAAGAACACAAGTTCCATGCACTCTCTTCTCTTCAAT 1646
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1509 ATATGTGTTCTCGCCAACGTCTCCAAGAACACAAGTTCCATGCACTCTCTTCCCTCCAAT 1568
Query 1647 AAA 1649
|||
Sbjct 1569 AAA 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81475484535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5