BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495023
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49650.1 | Symbols: XK-2, XK2 | xylulose kinase-2 | chr5:201... 2619 0.0
> AT5G49650.1 | Symbols: XK-2, XK2 | xylulose kinase-2 | chr5:20152781-20155768
FORWARD LENGTH=1988
Length=1988
Score = 2619 bits (1418), Expect = 0.0
Identities = 1738/1886 (92%), Gaps = 48/1886 (3%)
Strand=Plus/Plus
Query 1 ATTAGTGTCTGTTTTAAATTATCCAACCTTAT-AAAA--ACGACACATCTCTCT-T--TC 54
||||||||||||||||||| |||| ||||||| |||| ||||||||||||||| | ||
Sbjct 14 ATTAGTGTCTGTTTTAAATGATCCTACCTTATAAAAACGACGACACATCTCTCTCTCGTC 73
Query 55 GTCTTCTTCCTCTAAACCTGTG--AAGCTTTGGATCAATCAACAATGGCGGATCTCTCTC 112
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 74 TTCTTCTTCCTCTAAACCTGTGAAAAACTTTGGATCAATCAACAATGGCGGATCTCTCTC 133
Query 113 TTCCTCCCGATTCCATCTTCCTCGGCTTCGATAGCTCTACCCAGTCATTGAAAGCAACTG 172
|||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 134 TTCCTCCCGATTCCCTCTTCCTCGGCTTCGACAGCTCTACCCAGTCAATGAAAGCAACTG 193
Query 173 TGTTGGATTCAAACCTAAACATTGTCATAACCGAACTCGTTCATTTTGATTCTGATCTTC 232
|||||||||| ||||| |||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 194 TGTTGGATTCGAACCTGAACATTATCAAAACCGAACTCGTTCATTTCGATTCTGATCTTC 253
Query 233 CTCATTATAAAACCAAAGATGGGGTTTACAGAGACACTACCGTCAACGGTAGAATCGTCT 292
|||| || ||||||||||| |||||||||||||||||||| || ||||| |||||||| |
Sbjct 254 CTCAATACAAAACCAAAGACGGGGTTTACAGAGACACTACTGTAAACGGAAGAATCGTAT 313
Query 293 CACCAACTCTCATGTGGGTGGAGGCATTTGATCTCATTCTACAGAAGCTCTCTAATGCCA 352
| ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||
Sbjct 314 CTCCAACTCTCATGTGGGTCGAAGCATTTGATCTCATTCTCCAGAAGCTCTCTAACGCCA 373
Query 353 ATTTCGATTTCGGTAAAGTTATCGCGGTTTCGGGCAGCGGGCAACAACACGGTAGTGTGT 412
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 374 ATTTCGATTTCGCCAAAGTTATCGCTGTTTCAGGCAGCGGGCAACAACACGGTAGTGTGT 433
Query 413 ATTGGTCAAAGGGTGGTTCTGAGGTATTGAAATCATTGGATTCAAAGAGATGTTTGAAAG 472
|||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 434 ATTGGTCAAAAGGTAGTTCTGAGGTATTGAGATCATTGGATTCAAAGAGATCATTGAAAG 493
Query 473 ATCAACTCGAAAACGCTTTTTCGGTTAAGGAATCTCCTATATGGATGGATAGTAGTACTA 532
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 AACAACTCGAAAACGCTTTTTCGGTTAAGGAATCTCCTATATGGATGGATAGTAGTACTA 553
Query 533 CATTGCAGTGTAAAGAGATTGAGAATGCTGTTGGTGGAGCTATGGAGTTGTCGCAGATCA 592
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 554 CATTGCAATGTAAAGAGATTGAGAATGCTGTTGGTGGAGCTATGGAGTTGTCGAAGATCA 613
Query 593 CTGGCTCTCGTGCTTATGAGCGGTTTACTGGCCCGCAGATACGGAAGCTTTTTACT-AGT 651
||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |
Sbjct 614 CTGGCTCTCGTGCTTATGAGCGGTTTACTGGTCCGCAGATACGGAAGCTTTTTA-TGACT 672
Query 652 CAGGGGGATACGTATGAGAGCACGGAGCGGATTTCGCTTGTTAGTTCTTTTATGGCGTCT 711
|||||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 673 CAGGGGGAGGTGTATAAGAGCACGGAGAGGATTTCGCTTGTTAGCTCTTTTATGGCGTCT 732
Query 712 TTGTTGATAGGAGATTATGCTTCTATTGATGAAACTGATGCAGCTGGGATGAATTTGATG 771
|||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 733 TTGTTGGTTGGAGATTATGCTTGTATTGATGAAACTGATGCTGCTGGGATGAATTTGATG 792
Query 772 GATATTAAGAAACGATGTTGGTCTAAAGCTGCTTTAGAGGCTACAGCTACAGGTTTGGAG 831
|||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 793 GATATTGAGAAACGTTGTTGGTCTAAAGCTGCGTTAGAGGCTACAGCGACAGGTTTGGAG 852
Query 832 GAGAAACTTGGAAAGTTAGCACCAGCTTATGCAACTGCTGGTTCCATTTCTCAGTATTTT 891
||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 853 GAGAAACTTGGGAAGTTAGCTCCAGCTTATGCTACTGCTGGTTCTATTTCTCAGTATTTT 912
Query 892 GTTCAGAGGTTCGGTTTTGAAAAGAACTGCGTGGTTGTGCAGTGGTCAGGAGATAATCCT 951
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 913 GTTCAGAGGTTCGGTTTTGAAAAGAACTGTGTGGTTGTGCAGTGGTCGGGAGATAATCCT 972
Query 952 AATAGCTTGGCAGGTCTAACTCTTAGTACTCCTGGAGATCTGGCGATCAGTCTTGGGACC 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 973 AATAGCTTGGCAGGTCTAACTCTTAGTACTCCTGGAGATCTGGCGATCAGTCTTGGAACC 1032
Query 1012 AGTGACACGGCAAGGCTCTTGATTCTTGTATTTGGGATTACCAAAGAACTTCAACCCAGT 1071
|||||||||| | ||| | | || ||||||||||||||||||||||||
Sbjct 1033 AGTGACACGG------T----ATT-T-G-----GG-ATTACCAAAGAACTTCAACCCAGT 1074
Query 1072 CTTGAGGGCCATGTGTTACCTAATCCCGTGGACCCTGAGAGTTATATGGTAATGTTGGTT 1131
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1075 CTTGAGGGTCATGTGTTACCTAATCCTGTGGACCCTGAGAGTTATATGGTGATGTTGGTT 1134
Query 1132 TACAAGAATGCTTCTCTCACCCGTGAAGAAATTCGTGATCGTTGCGCTGAGGGATCTTGG 1191
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1135 TACAAGAATGCTTCTCTCACCCGGGAAGAAATTCGTGACCGTTGTGCTGAGGGATCTTGG 1194
Query 1192 GATGTTTTTAATAAGTATTTGCAGCAAACACAGCCGCTAAACAATGGGAAACTCGGCTTC 1251
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1195 GATGTTTTTAATAAGTATTTGCAGCAAACACAGCCACTAAACAATGGGAAACTCGGCTTC 1254
Query 1252 TACTACACTGAAAATGAAATTCTGCCCCCACTTCCCGTTGGCTCCCATCGTTACATTCTT 1311
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 TACTACACTGAAAATGAAATTCTGCCCCCACTTCCCGTTGGCTCTCATCGTTACATTCTT 1314
Query 1312 GAGAACTTCTCTGGTGAATCTCTTGAGGGTGTGAAGGAACGAGAGGCCAATGAGTTTGAC 1371
||||||||||||||||| |||||||||||||||||||||| ||||| | |||||| |||
Sbjct 1315 GAGAACTTCTCTGGTGAGTCTCTTGAGGGTGTGAAGGAACAAGAGGTCGGTGAGTTCGAC 1374
Query 1372 CCTCCCTCAGAGGTTAGGGCATTGATTGAAGGTCAGTTTCTATCAAAGCGGGCTCATACC 1431
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1375 CCTCCCTCAGAGGTTAGGGCATTGATTGAAGGTCAGTTTCTTTCAAAGCGGGCTCATACT 1434
Query 1432 GAGAGATTTGGAATGCCTTCCCCTCCAATCCGAATAATAGCCACAGGAGGAGCATCAGCT 1491
||||||||||| ||||| |||||||| ||||||||||||| || ||||| ||||| |||
Sbjct 1435 GAGAGATTTGGTATGCCCTCCCCTCCCCTCCGAATAATAGCAACCGGAGGTGCATCTGCT 1494
Query 1492 AATGAGAATATCCTT-AGTCTGATCTCGGCAATCTTCGGATGTGATGTGTATACTGTCCA 1550
|| ||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1495 AACGAGAATATC-TTGAGTCTGATCTCAGCAATCTTCGGATGTGATGTATATACTGTCCA 1553
Query 1551 TAGGCCTGATTCAGCATCACTTGGAGCTGCACTAAGAGCTGCTCATGGCTGGCTCTGCAA 1610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AAGGCCTGATTCAGCATCACTTGGAGCTGCACTAAGAGCTGCTCATGGCTGGCTCTGCAA 1613
Query 1611 CAAAAAAGGAAGCTTTGTACCAATCTCAAATCTCTACGAAGGGAAATTGGAGACGACATC 1670
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1614 CAAAAAAGGAAGCTTTGTACCAATCTCAAATCTCTACGAAGGGAAATTGGAAACAACATC 1673
Query 1671 TCTGAACTGCAAGCTCAAGGTAAAAGCAGGAGACGCAAACATAGCTTCCACCTACGGATT 1730
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 1674 TCTGAACTGCAAGCTCAAGGTAAAAGCAGGAGACGCGAACATTGCTTCCACCTATGGTTT 1733
Query 1731 GTTGATGAAGAAGAGAATGGAAATAGAGAACAAGCTTGTGGAGAAGTTAGGCCACTTCTG 1790
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 GTTGATGAAGAAGAGGATGGAAATAGAGAACAAGCTTGTGGAGAAGTTAGGCCACTTCTG 1793
Query 1791 A-AATCAA----CTCTCTACTCAATAA---AA----------GAGTCGAAAGAATAAAAA 1832
| || || ||| ||||||||||| || |||| |||||||||| ||
Sbjct 1794 AGAAGAAAAAAACTCACTACTCAATAATTCAAATAACTTAAAGAGTTGAAAGAATAACAA 1853
Query 1833 GTTCCATCTACTAAAACTAAAAGACA 1858
|||| |||||||||||||||||||||
Sbjct 1854 GTTCTATCTACTAAAACTAAAAGACA 1879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91967398440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5