BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495025
Length=3282
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49660.1 | Symbols: | Leucine-rich repeat transmembrane pro... 5145 0.0
> AT5G49660.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase family protein | chr5:20161206-20164729 REVERSE
LENGTH=3291
Length=3291
Score = 5145 bits (2786), Expect = 0.0
Identities = 3129/3295 (95%), Gaps = 22/3295 (1%)
Strand=Plus/Plus
Query 1 ATCTATCTGATTCTGATCGTGTACAAAAAACATGAACCCTTCTTTTGTTTTTATAAGCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTATCTGATTCTGATCGTGTACAAAAAACATGAACCCTTCTTTTGTTTTTATAAGCCT 60
Query 61 ATCAATAATTTGCAGTCTTTCAACTTGT-AACCTTAGcttcttcttcttcctctcttttt 119
||||| |||||||||||||||||||||| ||| |||| ||||||||||||||| ||||
Sbjct 61 ATCAACAATTTGCAGTCTTTCAACTTGTAAACTTTAG---CTTCTTCTTCCTCTC-TTTT 116
Query 120 tctcccaaacacaaaatttatctctcttttcttGCAACCTAAGTTAGGTTCTCTAGGTTA 179
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 117 TCTCCCAAACACAAAATTTCTCTCTCTTTTCTTGCAACCTAAGTTAGCTCCTCTAGGTTA 176
Query 180 cttttgatctttctctgaaatgcgtctcaaaattttcccctttcttgttctcttcttctt 239
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 177 CTTTTGATCTTTCTCTGAAATGCGTCTCAAAAATTTCCCCTTTTTTGTTCTCTTCTTCTT 236
Query 240 cttttgcttcAACAACAACCAATCATGGGGCTTGATGAGTTCGAACCAACAACCTCAATT 299
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTTTTGCTTCAACAGCAATCAATCATGGGGCTTGATGAGTTCGAACCAACAACCTCAATT 296
Query 300 TTTCAAACTTATGAAGAACTCTCTC-TC--CG--GC-TTGTCCTCTTGGAATGTCTCTGA 353
|||||||||||||||||||||||| || || || |||||| |||||||||||| |||
Sbjct 297 CTTCAAACTTATGAAGAACTCTCTCTTCGGCGACGCTTTGTCCACTTGGAATGTCTATGA 356
Query 354 CGTTGGTACTTACTACTGTAGCTTCAACGGCGTAAGATGCGACGGTCAAGGGCTAGTCAC 413
||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 357 CGTTGGTACCAACTACTGTAACTTCACCGGCGTAAGATGTGACGGTCAAGGGCTAGTCAC 416
Query 414 CGATCTTGATCTTTCCGGTTTGTCTCTCTCCGGGATTTTCCCAGAAGGGATTTGCTCTTA 473
|||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 417 CGATCTTGATCTTTCCGGTTTGTCACTCTCCGGGATTTTCCCTGATGGGGTTTGCTCTTA 476
Query 474 CTTACCAAACCTTCGTGTTCTTCGTCTCTCTCACAACCATCTCAACAGAAGCAGCAGCTT 533
||| |||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 477 CTTCCCAAACCTCCGTGTACTTCGTCTCTCTCACAACCATCTCAACAAAAGTAGCAGCTT 536
Query 534 CCTCAACACCATCCCTAATTGTTCTCTGCTTCAAGAGCTAAACATGAGCTCTGTATATCT 593
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 537 CCTCAACACCATCCCTAATTGTTCTCTGCTTCGAGACCTAAACATGAGCTCTGTATATCT 596
Query 594 CAAAGGAACTCTCCCTGATTTCCCACCGATGAAATCTTTAAGAGTCATCGACATGTCTTG 653
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 597 CAAAGGAACTCTCCCTGATTTCTCACAGATGAAATCTTTAAGAGTCATCGACATGTCTTG 656
Query 654 GAACCACTTCACCGGTAGCTTCCCTATCTCGATTTTCAATCTTAGC-GACTTAGAGTATC 712
||||||||||||||||||||||||| |||| || |||||||| | | |||||||||||||
Sbjct 657 GAACCACTTCACCGGTAGCTTCCCTCTCTCTATCTTCAATCTCA-CTGACTTAGAGTATC 715
Query 713 TCAATTTCAATGAGAATCCAGAGCTTGATCTCTGGACTCTACCAGATTATGTCTCTAAGC 772
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 716 TCAATTTCAATGAGAATCCAGAGCTTGATCTATGGACTCTACCGGATTCTGTCTCTAAGC 775
Query 773 TGACAAAGCTCACACACATGCTCTTGATGACTTGTATGCTCCATGGTAATATCCCGAGAT 832
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 776 TGACAAAGCTCACACACATGCTCTTGATGACGTGTATGCTCCATGGTAATATCCCAAGAT 835
Query 833 CCATTGGGAATTTGACTTCTCTTGTTGATCTTGAACTTAGCGGTAACTTCCTCTCCGGTG 892
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 836 CCATTGGGAACTTGACTTCTCTTGTTGATCTTGAACTTAGCGGAAACTTCCTCTCCGGTG 895
Query 893 AGATTCCAAAAGAAATAGGAAATCTTTCCAACCTGAGGCAGCTTGAGCTTTACTATAACT 952
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 896 AGATTCCAAAAGAAATAGGGAACCTTTCCAACCTAAGGCAGCTTGAGCTTTACTATAACT 955
Query 953 ATCACTTAACCGGGAGTATACCGGAGGAAATTGGTAATCTCAAGAATCTTACGGATATCG 1012
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 956 ATCACTTAACCGGGAGTATACCGGAGGAAATCGGTAATCTCAAGAATCTTACGGATATCG 1015
Query 1013 ATATCTCGGTTAGTAGGTTAACAGGAAGCATACCGGATTCAATCTGTAGTCTTCCAAAAC 1072
|||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| |
Sbjct 1016 ATATCTCGGTAAGTAGGTTAACCGGAAGCATACCGGATTCAATCTGCAGTCTACCAAACC 1075
Query 1073 TCCGAGTCCTTCAGCTCTACAACAACAGCTTAACAGGTGAGATTCCTAAGTCACTTGGCA 1132
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCCGAGTGCTTCAGCTCTACAACAACAGCTTAACAGGTGAGATTCCTAAGTCACTTGGCA 1135
Query 1133 ACTCAAAAACCTTGAAGATCTTGTCTCTCTACGACAACTACTTAACCGGTGAACTCCCGC 1192
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ATTCAAAAACCTTGAAGATCTTGTCTCTCTACGACAACTACTTAACCGGTGAACTCCCGC 1195
Query 1193 CAAATCTTGGATCTTCCTCGCCTATGATCGCTCTTGATGTCTCGGAAAACCGCCTTTCGG 1252
||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1196 CAAATCTCGGTTCTTCCTCGCCTATGATCGCTCTTGATGTCTCCGAAAACCGCCTTTCTG 1255
Query 1253 GTCCTCTTCCTGCCCATGTTTGCAAATCTGGTAAGCTTTTGTACTTTCTTGTGCTACAAA 1312
|||||||||| || || ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1256 GTCCTCTTCCGGCTCACGTTTGCAAATCCGGTAAGCTTTTGTACTTTCTTGTACTACAAA 1315
Query 1313 ACCGGTTCACTGGTTCGATCCCTGAGACTTATGGGAGCTGCAAGACCCTCATACGGTTCC 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 ACCGGTTCACTGGTTCGATCCCTGAGACTTATGGGAGCTGCAAGACCCTCATACGGTTCC 1375
Query 1373 GCGTTGCGAGCAACCGCCTCGTGGGATTCATACCACAAGGAGTTATGTCTCTGCCTCATG 1432
| ||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||
Sbjct 1376 GTGTTGCGAGCAACCGCCTTGTTGGAACCATACCTCAAGGAGTTATGTCTCTGCCTCATG 1435
Query 1433 TCTCCATCATCGACTTGGCTTACAACTCCTTGTTC-GGTCCAATACCTAATGCTATCGGT 1491
|||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1436 TCTCCATCATCGACTTGGCTTACAACTCCTTG-TCTGGTCCAATACCTAATGCGATCGGA 1494
Query 1492 AACGCTTGGAATTTGTCAGAGCTGTTTATGCAGGGTAACAGAATCTCCGGTGTTCTACCT 1551
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1495 AACGCTTGGAATTTGTCAGAGCTGTTTATGCAGAGTAACAGAATCTCCGGTGTTATACCT 1554
Query 1552 CACGAGATCTCTCA-TGCCACCAATCTTGTGAAGCTTGATCTCAGTAACAACCAACTGTC 1610
|| ||| ||||||| | |||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1555 CATGAGCTCTCTCACT-CCACCAATCTTGTGAAGCTTGACCTCAGCAACAATCAACTGTC 1613
Query 1611 TGGTCCAATACCTTCAG-AGATCGGAAGACTTAGGAAACTGAACTTACTTGTACTGCAAG 1669
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1614 TGGTCCAATACCTTCAGAAG-TCGGAAGACTTAGGAAACTGAACTTACTTGTACTGCAAG 1672
Query 1670 GCAACCACCTCGATTCTTCGATACCTGAATCATTTTCTAATCTCAAATCTCTGAACGTTC 1729
||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||
Sbjct 1673 GCAACCACCTCGATTCTTCTATACCTGATTCACTTTCTAATCTCAAATCTCTCAACGTTC 1732
Query 1730 TTGATCTGTCCAGTAATCTCCTCACCGGAAGAATCCCTGAAGACCTCTCCGAGTTGCTAC 1789
||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |
Sbjct 1733 TTGATCTGTCCAGTAATCTCCTCACTGGAAGAATACCTGAAAACCTCTCCGAGTTGCTCC 1792
Query 1790 CAACCTCGATTAATTTCTCGAGCAACCGGCTCTCTGGTCCCATCCCCGTCTCATTGATTA 1849
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1793 CAACCTCGATTAATTTCTCCAGCAACCGGCTCTCTGGTCCTATCCCCGTCTCATTGATAA 1852
Query 1850 GAGGAGGTCTCGTAGAAAGCTTTTCGGATAACCCTAATCTCTGTGTTCCGCCAACTGCTG 1909
|||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1853 GAGGAGGTCTTGTAGAAAGCTTTTCGGATAACCCTAATCTCTGTATTCCACCAACTGCTG 1912
Query 1910 GTTCATCGGATTTGAAGTTTCCGATGTGTCAAGAGCCTCGCGGCAAGAAGAAGCTGAGCT 1969
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1913 GTTCATCAGATTTGAAGTTTCCGATGTGTCAAGAGCCTCACGGCAAGAAGAAGTTGAGCT 1972
Query 1970 CCATCTGGGCAATCCTTGTCTCAGTCTTCATCCTAGTCCTAGGGGGCATCATGTTTTACT 2029
||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1973 CCATCTGGGCAATACTTGTCTCAGTTTTCATCCTAGTCCTAGGGGTCATCATGTTTTACT 2032
Query 2030 TGAGACAACGGATGAGTCAAAACAGAGCAGTGATAGAGCAAGACGAGACCTTAGCGTCTT 2089
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 TGAGACAACGGATGAGTAAAAACAGAGCAGTGATAGAGCAAGACGAGACCTTAGCGTCTT 2092
Query 2090 CTTTCTTCTCCTACGACGTCAAGAGTTTCCACCGCATAAGTTTCGATCAAAGGGAGATTC 2149
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2093 CTTTCTTCTCCTACGACGTCAAGAGTTTCCACCGCATAAGTTTCGACCAAAGGGAGATTC 2152
Query 2150 TTGAAGCTCTTGTGGACAAGAACATCGTAGGCCATGGTGGTTCGGGTACGGTCTACAGAG 2209
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 2153 TTGAATCTCTTGTGGACAAGAACATCGTAGGTCATGGTGGTTCGGGTACTGTCTATAGAG 2212
Query 2210 TAGAACTTAAATCCGGAGAAGTAGTTGCGGTGAAGAAACTATGGAGCCAAAGCAGCAAAG 2269
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2213 TAGAGCTTAAATCCGGTGAAGTAGTTGCGGTGAAGAAACTATGGAGCCAAAGCAACAAAG 2272
Query 2270 ACTCAGCTTCTGAAGACAAAATGCATTTGAACAAGGAGTTGAAAACCGAAGTTGAGACCC 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 ACTCAGCTTCTGAAGACAAAATGCATTTGAACAAGGAGTTGAAAACCGAAGTTGAGACCC 2332
Query 2330 TCGGGAGCATTCGCCATAAGAACATCGTGAAACTCTTCAGCTATTTCTCAAGTTTGGATT 2389
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2333 TCGGGAGCATTCGCCATAAGAACATTGTGAAACTCTTCAGCTATTTCTCAAGTTTGGATT 2392
Query 2390 GTAGTCTTTTGGTGTATGAGTACATGCCTAATGGTAACTTATGGGACGCTCTTCACAAAG 2449
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 GTAGTCTTTTGGTATATGAGTACATGCCTAATGGTAACTTATGGGACGCTCTTCACAAAG 2452
Query 2450 GCTTTGTTCATCTCGAGTGGCGTACACGTCATCAAATCGCGGTTGGAGTCGCTCAAGGAT 2509
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2453 GCTTTGTTCATCTTGAGTGGCGTACTCGTCATCAAATCGCGGTTGGAGTAGCTCAAGGAT 2512
Query 2510 TGGCTTACCTTCACCATGATCTCTCCCCGCCAATTATTCATCGCGATATCAAATCGACAA 2569
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2513 TGGCTTACCTTCACCATGATCTCTCCCCACCAATCATTCATCGCGATATCAAATCGACAA 2572
Query 2570 ACATCTTGTTGGATGTAAACTATCAGCCTAAAGTTGCTGATTTTGGCATTGCAAAGGTGT 2629
|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 2573 ACATCTTGTTGGATGTTAACTATCAGCCTAAAGTTGCGGACTTTGGCATTGCAAAGGTGT 2632
Query 2630 TACAAGCTAGAGGGAAAGATTCAACCACAACCGTTATGGCTGGCACCTATGGTTACTTGG 2689
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2633 TACAAGCTAGAGGCAAAGATTCAACCACAACCGTTATGGCTGGCACCTATGGTTACTTGG 2692
Query 2690 CCCCAGAATATGCGTACTCATCCAAAGCAACGATCAAATGCGACGTGTACAGTTTCGGGG 2749
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2693 CCCCAGAATATGCGTACTCGTCCAAAGCAACGATCAAATGCGACGTGTACAGTTTCGGGG 2752
Query 2750 TTGTGTTAATGGAGCTGATCACGGGGAAGAAACCGGTGGATTCGTGTTTCGGGGAGAACA 2809
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2753 TTGTGTTGATGGAGCTGATCACGGGGAAGAAACCGGTGGATTCGTGTTTCGGGGAGAACA 2812
Query 2810 AAAACATAGTGAACTGGGTGTCAACAAAGATTGACACAAAAGAAGGATTGATTGAGACAC 2869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 AAAACATAGTGAACTGGGTGTCAACAAAGATTGACACAAAAGAAGGATTGATTGAGACAC 2872
Query 2870 TAGACAAGAGATTATCGGAATCATCGAAAGCGGACATGATCAACGCCTTGCGTGTGGCTA 2929
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2873 TAGACAAGAGATTATCAGAATCATCGAAAGCAGACATGATCAACGCCTTGCGTGTGGCTA 2932
Query 2930 TCCGTTGTACTAGCAGAACTCCAACAATTCGTCCTACTATGAATGAAGTTGTCCAGCTTC 2989
|||| ||||| || |||||||||||||| |||||||| ||||| |||||||| |||||||
Sbjct 2933 TCCGCTGTACAAGTAGAACTCCAACAATCCGTCCTACCATGAACGAAGTTGTTCAGCTTC 2992
Query 2990 TGATTGACGCAACGCCTCAAGGAGGACCCGACATGACGTCTAAATCC-ACAACAAAGATT 3048
|||| |||||||||||||||||||||||||||||||| || ||| || || || ||||||
Sbjct 2993 TGATCGACGCAACGCCTCAAGGAGGACCCGACATGACCTCCAAA-CCTACGACCAAGATT 3051
Query 3049 AAGGATTCAATAGTGTCAGATCATCTCACACAAACAAGACTCTAGTCATGCTTTCTTGAT 3108
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 3052 AAGGATTCAATAGTGTCAGATCATCTCACGCAAACAAGACTCTAGTCATGCTTTCTTGGT 3111
Query 3109 GAAGAGGTGTAGCAA-CAGTTCGTATAACTTCTAAAGATATCATGTATTTAAATATATAT 3167
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3112 GAAGAGGTGTAGCAAACAGTTCGTATAACTTCTAAAGATATCATGTATTTAAATATATAT 3171
Query 3168 CATAGAAGAAACTGCTTATATATATAGTCTTTTAATACTTCTATGTATCTTAACATCTAT 3227
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 3172 CATAGAAGAAACTGCTTATATATATAGTCTTTTAATACTTCAATGTATTTTAACATCTAT 3231
Query 3228 ATTTTAAAGACTTTGGTTATTTCCGGATTTGCTTCTCCTATTTCAAATCATCATA 3282
|||||||||||||||||||||||| ||| |||||| | |||| |||||||||
Sbjct 3232 CCTTTAAAGACTTTGGTTATTTCCGGTTTTAATTCTCCCAATTCAGATCATCATA 3286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163293399465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5