BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495031
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49710.3 | Symbols: | unknown protein; BEST Arabidopsis tha... 1229 0.0
> AT5G49710.3 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G24590.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:20195410-20197353 FORWARD LENGTH=1024
Length=1024
Score = 1229 bits (665), Expect = 0.0
Identities = 912/1023 (89%), Gaps = 50/1023 (5%)
Strand=Plus/Plus
Query 1 aaaa-aaaaaaaaGGAAGAGAATTTGCGCGACAACAACAACGATCAGTCGTC-GTCGTCG 58
|||| |||| |||||||||||||||||||| |||||||||||| | || |||||||
Sbjct 12 AAAACAAAACAAAGGAAGAGAATTTGCGCG---ACAACAACGATC-G--ATCAGTCGTCG 65
Query 59 TCTTCTCAGATCTTCTTCCTCAACGGATTCTATGCCGCAAGAGCTTCGATTGTATCCTCT 118
|||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 66 TCTTCTCAGATCTTGTTCTTCAAAGGATTCTATGCCGCAAGAGCTTCGATTGTATCCTCT 125
Query 119 CTGAGGATTGGG--AT-----GGA-CATCG---AC---AGCAAGAACAAAGGAAAACGAA 164
|||||||||||| || | ||| | || ||| || ||||||||||||||
Sbjct 126 CTGAGGATTGGGTAATACCCAATACCATGGATAACAATAGCGAGCGCAAAGGAAAACGAA 185
Query 165 TTTACAAAGATAATATTCGTGTAAAGCGGAAAACTTTGCAAGCTTTACTCGATGATTGCC 224
| | || |||||||||||||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 186 TCGATAAGGATAATATTCGTGTCAAGCGGAAAACTTTGCAAGCTTTGCTCAATGATTGCC 245
Query 225 AGAGAGCCCTCGAGTTGTTAAACCTAGCCGAACTCAGTTCTGAAGAAGATG-AG--G--- 278
|||||||||||||||| |||||| |||||||| ||||||||||||| |||| || |
Sbjct 246 AGAGAGCCCTCGAGTTATTAAACTTAGCCGAAGTCAGTTCTGAAGACGATGAAGATGATA 305
Query 279 AAAGCACCAACGAGAGAAATGGGTCACAAGAG-G-A---G-GAA---------T-CGAAC 322
|||||||| |||| ||| ||||||||||||| | | | ||| | ||| |
Sbjct 306 AAAGCACCGGCGAGGGAAGTGGGTCACAAGAGAGCAGGGGAGAAGTTTCTTCTTCCGATC 365
Query 323 AAGGGAGATCCTGAAGCTGATGAATTATATGATCTCATCAAATCCAGGGTTGAATGTGAT 382
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GA-GAAGATCCTGAAGCTGATGAATTATATGATCTCATCAAATCCAGGGTTGAATGTGAT 424
Query 383 GACTTCCTTGAAAAGATTGAGTCAGCGCAGGTTTCAGCGCCGCAACATCTTGCTGAAGAT 442
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 425 GACTTCCTTGAAAAGATTGAGTCAGCCCAGGTTTCAGCGCCGCAACATCTTGCTGAAGAT 484
Query 443 AGTGGCGCTTGGGATGTAGTTAGTGAAGATGATCTTTGGGATGATGAAACCATGGCTCAA 502
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AGTAGCTCTTGGGATGTAGTTAGTGAAGATGATCTTTGGGATGATGAAACCATGGCTCAA 544
Query 503 AGGGAAGAAGATTATGTTCTTGTTAGGGAAGAAGATATAGCAGAGGGTATTGCATGTTTT 562
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 545 AGGGAAGAAGATTATGTCCTTGTTAGAGAAGAAGATATAGCAGAGGGCATTGCATGTTTC 604
Query 563 ATGGCTACTTATTTACAATCACTTAAGCAGACAAAGGACTTGACTCCTGAGCAGCTTCAG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ATGGCTACTTATTTACAATCACTTAAGCAGACAAAGGACTTGACTCCTGAGCAGCTTCAG 664
Query 623 AAAGCACTTAGCAGGATGTTCTCAGTGAAGAATAGAAAGGGGAAACTTCGGAAAGCCTGG 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AAAGCACTTAGCAGGATGTTCTCAGTGAAGAATAGAAAGGGGAAACTTCGGAAAGCCTGG 724
Query 683 GATGGAAGTAAGGTTGCTTACAACGTAGCATCGTGGAGCGCAACTGTTATAGGGATCTAT 742
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 725 GATGGAAGTAAGGTTGCTTACAACGTAGCGTCATGGAGCGCAACTGTTATAGGGATCTAT 784
Query 743 CAAAATCCGGTGATCCTCAGGGTTGCATCAAAGGCCTTCTGGGCGTCGTGCCATGTAATA 802
||||| || |||||||| |||||||||||||||||||| |||||||| || |||||||||
Sbjct 785 CAAAACCCCGTGATCCTGAGGGTTGCATCAAAGGCCTTTTGGGCGTCATGTCATGTAATA 844
Query 803 TCGAAGCTTGTCTGATTGATGACGAAGCCTT-TCGAGCACATCTCTCGCCTGTGTGCTGC 861
|||||||| || ||||||| || || ||||| |||| |||||||| |||||||| |||
Sbjct 845 TCGAAGCTCGTTTGATTGACGATGACGCCTTCTCGAACACATCTC--GCCTGTGTACTGT 902
Query 862 GATAACAGTTTAATTTGGGTTCCTCCATGATCTATGTAAATTA-AATTTCATCATGTATA 920
||||||||||||||||||||| ||||||||||| ||| ||| | || |||||||||||||
Sbjct 903 GATAACAGTTTAATTTGGGTTTCTCCATGATCTCTGTGAAT-ACAACTTCATCATGTATA 961
Query 921 AAGAATGCCATTTGTGATTCCGTTCTTCACTGCACTATTCTTTCTGCATCACCGTTTATA 980
||||||||||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 962 AAGAATGCCATATGTAATTCCGTTCTTTACTGCAATATTCTTTCTGCATCATCGTTTATA 1021
Query 981 TCC 983
|||
Sbjct 1022 TCC 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5