BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495039
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49800.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 1266 0.0
> AT5G49800.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr5:20234642-20236184 REVERSE
LENGTH=907
Length=907
Score = 1266 bits (685), Expect = 0.0
Identities = 828/894 (93%), Gaps = 21/894 (2%)
Strand=Plus/Plus
Query 1 ACAGCATAAGTCTTCATACCTTCGGATTCCTCAATCTCCTCTCCACATCATGAACGGTCT 60
||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1 ACATCATAAGTCTTCATACCTTCGGATTCTTCAATCTCTTCTACACATCATGAACGGTCC 60
Query 61 AGTCCCCTCCAGCAGCTCCTGGTCGGTGAGTGAGGAGTCGCTGAGAAGGTACGTGAGGTT 120
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AGTCCCCTCCAGCCGCTCCTGGTCGGTGAGCGAGGAGTCGCTGAGAAGGTACGTGAGGTT 120
Query 121 TGCGAGTGAGAGCTGCATCCAAGAGCTCTTATCTTCCTCTGAGGCCGGACGCTTTGGGAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCGAGTGAGAGCTGCATCCAAGAGCTCTTATCTTCCTCTGAGGCCGGACGCTTTGGGAA 180
Query 181 CGCGTCCAATGGGTGGAAGATGGTGAGGCATGACTCGAACGGTGTCGAGATTTCAAAACG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCTTCCAATGGGTGGAAGATGGTGAGGCATGACTCGAACGGTGTCGAGATTTCAAAACG 240
Query 241 CGACTCGGGATCGCTGCACGCGTTTCGAAGCCGTAGGATCCTCACATCAGTCTCTCCAGA 300
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 241 CGACTCGGGATCGCTACACGCGTTTCGAAGCCGCAGGATCCTCACATCAGTCTCCCCAGA 300
Query 301 GCAGTTCATCACAGTCGCAAACGCCATAGACGCGGCCAAGCAATGGGAAGGCGACCTGGT 360
|||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 301 GCAGTTCATCACGGTTGCAAATGCGATAGACGCGGCCAAGCAATGGGAAGGCGACCTGGT 360
Query 361 GGAAGCAACACATATTAGAGACATAGATGAGAATCTGAGCGTAATCCGTTTAAGGTTTGG 420
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GGAGGCAACACACATTAGAGACATAGATGAAAATCTGAGCGTAATCCGTTTAAGGTTTGG 420
Query 421 CGAAAACTCGAAACCGCTCTTCAGGAAAAGAGAGTTCATTGTCTACGAAAGACGTGAGAC 480
||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 421 CGAAAACTCGAAACCGCTCTTTAGGAACAGAGAGTTCATTATCTACGAAAGACGTGAGAC 480
Query 481 CATGCAAGACGGCACTCTCGTGGTGGCGGTTGCTTCACTACCGAAGGAGATGGCAGAAGG 540
|||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 481 CATGCAAGACGGTACTCTCGTGGTGGCGGTTGCGTCGCTACCAAAGGAGATGGCAGAAGG 540
Query 541 ATTGGAGCCAACAAAGAAAAAGAAAAACAATTCCATTATTAGAGGATTGTTGGTTGAGTC 600
||||||||||||| |||||||||||||||||| || |||||||| || |||||||||||
Sbjct 541 ATTGGAGCCAACAGAGAAAAAGAAAAACAATT--AT-ATTAGAGGGTTTTTGGTTGAGTC 597
Query 601 AGGTTGGGTTTTGGAGAAGCTTGAAGATACCTCTTGCATGATTACTTATGTTGTTCAGTT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGGTTGGGTTTTGGAGAAGCTTGAAGATACCTCTTGCATGATTACTTATGTTGTTCAGTT 657
Query 661 GGATCCCGCAGGATGGTTACCAAAGTGTTTTGTGAACAGACTAAACACAAAGCTAGTAAT 720
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 GGATCCTGCAGGATGGTTGCCAAAGTGTTTTGTGAACAGACTAAACACAAAGTTAGTAAT 717
Query 721 GATAATTGATAACCTTAGAAAGCTTGCTCAAGCTTCTCTACCCTCTCTTCCTCCTACTTG 780
|||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||
Sbjct 718 GATAATTGATAACCTTAGAAAGGTTGCTCAAGCTTATCTACCCTCTTTTCCTCCTCCTT- 776
Query 781 ATTAGGTCTCTCTTTCttt-t-t--ttGTTT--GTTTGTAAACAACTAAACATTTTTACA 834
| | ||||||||||||| | | || ||| ||||||||||| || ||||| ||
Sbjct 777 A---GCTCTCTCTTTCTTTGTCTCCTTCTTTTTGTTTGTAAACA--TA----TTTTTCCA 827
Query 835 AAAAGAGTTAAATGATCGTAATTAAGAGGCCAACAACTCCTCCCTCTTTCCTAC 888
||| |||| || |||||||||||||||||| || |||||||||||||| ||||
Sbjct 828 AAA-GAGTGAAGTGATCGTAATTAAGAGGC-AATTACTCCTCCCTCTTTTCTAC 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5