BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495041
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49820.1 | Symbols: RUS6 | Protein of unknown function, DUF6... 2916 0.0
AT3G47965.1 | Symbols: | unknown protein; Has 35333 Blast hits... 69.4 1e-10
> AT5G49820.1 | Symbols: RUS6 | Protein of unknown function, DUF647
| chr5:20246500-20249545 REVERSE LENGTH=1860
Length=1860
Score = 2916 bits (1579), Expect = 0.0
Identities = 1767/1856 (95%), Gaps = 19/1856 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTTCTTCAGAGCTTCCCTCGTTTCCTCCGCCGGAGAG--ACTCCATTAAAAT-C 57
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 15 CTTCTTCTTCTACAGAGCTTCCCTCGTTTCCTCCGCCGGAGAGACACTCCATTAAAATCC 74
Query 58 CTTCTTCTTCGATCCTTC-TCAAGATTCACAACAACAACAATGCCAAGCGTCAAGCTCAA 116
||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 75 CTTCTTCATCGATCCTTCAT-TAGATTTACAACAACAACAATGCCAAGCGTCAAGCTCAC 133
Query 117 ACATCATTCTCCACCTGACACCATTtcctcctcctcctccgactccgtccgcctcctttc 176
||| |||||||||||||||| | | | | |||||||||||||||| ||||||||
Sbjct 134 ACACCATTCTCCACCTGACA-C---T-AT--T--GCCTCCGACTCCGTCCGTCTCCTTTC 184
Query 177 ccgtgaaactctccgcatcagcgcctctctcGCTTCTCCTCCCGTTGATGATCTCCCTCC 236
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CCGTGAAACTCTCCGAATCAGCGCCTCTCTCGCTTCTCCTCCCGTTGATGATCTCCCTCC 244
Query 237 TCACTCACCTCCATCACCTGATTCCCAATTTCTTCATTCAACTCTCAGATTGATCTGCTG 296
|||||| |||||| | || ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 245 TCACTCTCCTCCACCTCCAGATTCTCAATTTCTTCATTCGACTCTGAGATTGATCTGTTG 304
Query 297 CGAAGAAATCGATGGCCGTCGATTTAAGTATGTCGCTGAGAGCGATGGTTCTGGGAGATT 356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 305 CGAAGAAATCGATGGCCGTCGGTTTAAGTATGTCGCTGAGAGCGATGGTTCTGGGAGATT 364
Query 357 CAAGAAGAATTCAGTTCGTGCTATTAGCTTGGAGTCTCCTCAGACTCCTTTTGATGAAGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CAAGAAGAATTCAGTTCGTGCTATTAGCTTGGAGTCTCCTCAGACTCCTTTTGATGAAGT 424
Query 417 GGGTTCGTTTCTTAGATCTTACGTTGTACCTGAAGGCTTTCCTGGGAGTGTTAATGAGTC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GGGTTCGTTTCTTAGATCTTACGTTGTACCTGAAGGCTTTCCTGGGAGTGTTAATGAGTC 484
Query 477 TTATGTTCCGTATATGACTTGGAGAGCTTTGAAACATTTCTTTGGTGGAGCTATGGGTGT 536
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TTATGTTCCTTATATGACTTGGAGAGCTTTGAAACATTTCTTTGGTGGAGCTATGGGTGT 544
Query 537 GTTTACTACTCAAACTCTTCTTAATTCTGTTGGAGCTTCAAGAAACAGTTCTGCTTCTGC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GTTTACTACTCAAACTCTTCTTAATTCTGTTGGAGCTTCAAGAAACAGTTCTGCTTCTGC 604
Query 597 TGCTGTTGCCATCAATTGGATTCTCAAGGATGGTGCTGGGCGTGTTGGAAAAATGCTTTT 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 605 TGCTGTTGCCATCAATTGGATTCTCAAGGATGGTGCTGGGCGTGTTGGGAAAATGCTTTT 664
Query 657 TGCGAGGCAGGGAAAGAAATTTGATTATGATTTGAAACAGTTACGGTTTGCTGGTGATCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGCGAGGCAGGGAAAGAAATTTGATTATGATTTGAAACAGTTACGGTTTGCTGGTGATCT 724
Query 717 TTTAATGGAGCTGGGTGCTGGTGTAGAATTAGCGACTGCTGCAGTTCCACACCTTTTTCT 776
|| |||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 725 ATTGATGGAGCTCGGTGCTGGTGTAGAGTTGGCGACGGCTGCAGTTCCACATCTTTTTCT 784
Query 777 TCCACTAGCTTGTGCTGCTAATGTTGTTAAGAATGTTGCAGCTGTAACATCAACGTCTAC 836
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 785 TCCACTGGCTTGTGCTGCTAATGTTGTTAAGAATGTTGCAGCAGTAACATCAACGTCTAC 844
Query 837 TCGTACACCGATCTATAAAGCCTTTGCTAAAGGAGAAAACATAGGAGATGTCACTGCTAA 896
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 845 TCGTACACCGATCTATAAAGCCTTTGCTAAAGGAGAAAACATAGGAGACGTAACTGCTAA 904
Query 897 GGGAGAGTGTGTTGGTAATATTGCAGATCTGATGGGAACTGGGTTTAGCATCCTGATATC 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGGAGAGTGTGTTGGTAATATTGCAGATCTGATGGGAACTGGGTTTAGCATCCTGATATC 964
Query 957 CAAAAGAAATCCTTCCTTGGTCACAACATTTGGTCTTCTATCATGTGGCTATCTCATGAG 1016
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AAAAAGAAATCCTTCGTTGGTCACAACATTTGGTCTTCTATCATGTGGCTATCTCATGAG 1024
Query 1017 CTCGTACCAAGAGGTTAGATCTGTAGTACTGCATACACTAAACCGTGCGAGATTTACAGT 1076
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1025 CTCGTACCAAGAGGTTAGATCTGTAGTATTGCATACACTAAACCGTGCTAGATTTACAGT 1084
Query 1077 AGCAGTGGAGTCCTTTCTTAAGACGGGGCGGGTTCCCTCACTGCAGGAAGGTAATATCCA 1136
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1085 AGCAGTGGAGTCCTTTCTTAAGACGGGGCGGGTTCCCTCATTGCAGGAAGGTAATATCCA 1144
Query 1137 AGAAAAGATATTCACTTTTCCGTGGGTGGATGATCGGCCAGTGATGCTTGGAGCCAGATT 1196
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGAAAAGATATTCACTTTTCCATGGGTGGATGATCGGCCAGTGATGCTTGGAGCCAGATT 1204
Query 1197 TAAGGATGCATTCCAAGACCCCAGCACATATATGGCTGTAAAGCCTTTTTTCGATAAAGA 1256
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1205 TAAGGATGCATTCCAAGACCCCAGCACGTATATGGCTGTAAAGCCTTTTTTCGATAAAGA 1264
Query 1257 AAGATACATGGTGACATACAGCCCTACCAAGGGTAAAGTCTATGCACTGCTCAAGCATCA 1316
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1265 AAGATACATGGTAACGTACAGCCCTACCAAGGGTAAAGTCTATGCACTGCTCAAACATCA 1324
Query 1317 GGCTAACTCAGATGACATTCTCAAAGCAGCATTTCATGCACATGTGCTTCTTCATTTTAT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1325 GGCTAACTCAGATGACATTCTCAAAGCAGCATTTCATGCACATGTGCTTCTTCATTTCAT 1384
Query 1377 GAATCAATCAAAAGATGGTACCCCAAGATTGGTGGAGCAATTAGATCCTGCTTTTGCTCC 1436
|||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 1385 GAATCAATCAAAAGATGGTAACCCAAGATCGGTGGAGCAATTAGATCCTGCGTTTGCTCC 1444
Query 1437 TACGGAATATGAACTCGAGTCTCGTATTGCTGAGTCGTGTGAAATGGTTTCCACATCATA 1496
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TACGGAATATGAGCTCGAGTCTCGTATTGCTGAGTCGTGTGAAATGGTTTCCACATCATA 1504
Query 1497 TGCCATCTTTAAGAGCAGGGCTGCAGAACAGGGTTGGAGAATGTCAGAATCTCTTCTTAA 1556
|| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1505 TGGCGTCTTCAAAAGCAGGGCTGCAGAACAGGGTTGGAGAATGTCAGAATCTCTGCTTAA 1564
Query 1557 TCCTGGCCGGGCTAGGTTATGTCATATGAAGGAGGAGTAAGCATACATCGCTTGGTGAGG 1616
||||||||||||||||||||||||| ||||||||| | | | | ||||||| || ||||
Sbjct 1565 TCCTGGCCGGGCTAGGTTATGTCATGTGAAGGAGGGGGA-GTAAACATCGCCTGTTGAGA 1623
Query 1617 CTGGTCATCGACCTGAATCCGGCTTTTATAGTTATTTCACTGTCAC--TCTAAATTTTGC 1674
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1624 CTGGTCATCGACCTGAATC-GGCTTTTATAGTTATTTCACTGTCACACTCTAAATTTTGC 1682
Query 1675 TGTTTTGGTTTCATGTAGAAAAAA-CAGGTTTTGGTTGGTACACGTTATATTAACCATGC 1733
||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct 1683 TGTCTTGGTTTCATGAAGAAAAAAACAGGTTTTGGTTGGTACACGTTTTATTAACCAGGC 1742
Query 1734 TGTAAAAAATAGAATGATATGTAGCTTTTGTAAATTGTGAGAATGCCACTGGTGTAATTT 1793
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TGTAAAAAATAGAACGATATGTAGCTTTTGTAAATTGTGAGAATGCCACTGGTGTAATTT 1802
Query 1794 AACAGACGAATCTTCTTTGTTTACCACTTCTCACATCATAATTGTTACACAGGTTC 1849
|||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1803 AACAGATGAATCTTCTTTGTGTACCAATTCTCACATCATGATTGTTACACAGGTTC 1858
> AT3G47965.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:17707918-17708909
REVERSE LENGTH=513
Length=513
Score = 69.4 bits (37), Expect = 1e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 991 CTTCTATCATGTGGCTATCTCATGAGCTCGTACCAAGAGG 1030
||||||||||||||||||||||||||||| ||||||||||
Sbjct 193 CTTCTATCATGTGGCTATCTCATGAGCTCTTACCAAGAGG 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5