BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495043
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49840.1 | Symbols: | ATP-dependent Clp protease | chr5:202... 2955 0.0
> AT5G49840.1 | Symbols: | ATP-dependent Clp protease | chr5:20255191-20259300
FORWARD LENGTH=2144
Length=2144
Score = 2955 bits (1600), Expect = 0.0
Identities = 1755/1829 (96%), Gaps = 13/1829 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTGTAGCTTATCCATTTCCAGATTTGTCTCGAGGAAGACAATAACATCATCGTCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 53 ATGTTTTGTAGCTTATCCATTTCCAGATTTGTCTCGAGGAAGACAATAACATCATCATCT 112
Query 61 CTTCTCTCTCGCAATTTCAGATTCCTTCTCTCCGTTGATTCTCCTCCTCACACCCCTCTT 120
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 113 CTTCTCTCTCGCAGTTTCAGATTCCTTCTCTCCGTTGATTCTCCTCCTCACATCCCTCTT 172
Query 121 CTACGCCCTTCTTCCAACACCCTAATCCCTTCCTCCTCCTTCTCTCGCCGTATTTGGGAC 180
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 173 CTACGCCCTTCTTCCAACACCCTAATCCCTTCCTCTTCCTTCTCCCGCCGTATTTGGGAC 232
Query 181 TCCTGCAGCGGCGGTGGC---GGTGGCGGCGGAGACGATTATGACCACATCAGAAGTGAC 237
|||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 233 TCCTGCAGCGGCGGCGGCGGAGGTGGCGGCGGAGATGATTATGATCACATCAGAAGTGAC 292
Query 238 GTCAATTGCCCTCGTTGCTCAGCTCAGATGCACGTCATCTTCTCAAATCGTCCATTGTCT 297
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 293 GTCAATTGTCCTCGTTGCTCTGCTCAGATGCACGTCATCTTCTCAAATCGTCCATTGTCT 352
Query 298 CTCACAGCAAGAGAGCCAGGGATCTATCAAGCTGTTAATTTCTGTTCTCAATGCAAAACA 357
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CTAACAGCAAGAGAACCAGGGATCTATCAAGCTGTTAATTTCTGTTCTCAATGCAAAACA 412
Query 358 GCTTTTTACTTTAGACCATTCAAGCTCTCTCCTTTACAAGGGAGTTTTATTGAACTAGGG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 413 GCTTTTTACTTTAGACCATTCAAGCTCTCTCCTTTACAAGGGAGTTTTATTGAACTCGGG 472
Query 418 AAGGTTAAAGGAACtgatgatgaccatgatgatgatgatgatgatCAGAAATCTTTCCCT 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AAAGTTAAAGGAACTGATGATGACCATGATGATGATGATGATGATCAGAAATCTTTCCCT 532
Query 478 AGGAATTGGAAAATTCAGGGTCTTAGAAACGATGAAGATGGTGAGGATGCTGATGAGGAT 537
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 533 AGGAATTGGAAAATTCAAGGTCTTAGAAGCGATGAAGATGGTGAGGATGCTGATGAGGAG 592
Query 538 GAGGATGAAACTAATGGTGGTGATAAAGAGAAGCAATCTGTGATTAAGCTTCCCACACCT 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 593 GAGGATGAAAGTAATGGTGGTGATAAAGAGAAGCAATCTGTGATTAAGCTTCCAACTCCT 652
Query 598 AAGGAAATTTGTCAAGGGCTTGATGAGTTTGTCATTGGTCAAGAAAAGGCTAAGAAGGTG 657
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 653 AAGGAAATTTGTCAAGGGCTTGATGAGTTTGTCATTGGTCAAGAGAAGGCTAAGAAGGTT 712
Query 658 CTTTCTGTGGCTGTTTATAATCATTACAAAAGAATATATCATGCTTCTAGGAAAAAAGGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTTTCTGTGGCTGTTTATAATCATTACAAAAGAATATATCATGCTTCTAGGAAAAAAGGG 772
Query 718 TTTGTTTCCAG-GTC-TGATAACATTGATATGGAAGATGATAATATCGATCATGTGGAGT 775
| || || ||| || | |||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 773 TCTGCTT-CAGAATCAT-ATAACATTGATATGGAGGATGATAATATTGATCACGTGGAGT 830
Query 776 TGGATAAGAGCAATGTGTTGTTGCTTGGCCCTACTGGTTCAGGAAAGACTTTACTGGCAA 835
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 831 TGGATAAGAGTAATGTGTTGTTGCTTGGTCCTACTGGTTCAGGAAAGACTTTACTGGCAA 890
Query 836 AAACTTTAGCGCGTATTGTCAATGTGCCATTCGCCATTGCTGATGCGACTTCACTAACTC 895
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 891 AAACTTTGGCGCGTATTGTCAATGTGCCATTCGCTATTGCTGATGCGACTTCACTAACTC 950
Query 896 AGGCAGGTTATGTTGGTGAAGATGTGGAATCAATATTGTACAAACTATATGTGGAAGCTG 955
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AGGCAAGTTATGTTGGTGAAGATGTGGAATCAATATTGTACAAACTATATGTGGAAGCTG 1010
Query 956 GGTGCAATGTAGAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAGATGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1011 GGTGCAATGTAGAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAAATGA 1070
Query 1016 CTATGAAGTCTCATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTCCAACAGT 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1071 CTATGAAGTCTCATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTTCAACAGT 1130
Query 1076 CATTGCTAAAATTGCTGGAAGGAAC--T-GT---TGTCCCGATTCCTGAAAAAGGATTAC 1129
||||||||||||||||||||||||| | || |||||||||||| || ||||||||||
Sbjct 1131 CATTGCTAAAATTGCTGGAAGGAACTGTGGTCAGTGTCCCGATTCCCGAGAAAGGATTAC 1190
Query 1130 GGAGAGATCCTCGAGGAGATAGCATTCAGATGGATACGAAAGACATCCTTTTTATTTGTG 1189
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1191 GGAGAGATCCTCGAGGAGATAGCATTCAGATGGATACAAAAGACATCCTTTTTATTTGTG 1250
Query 1190 GTGGAGCATTTATCGATCTGGAGAAAACTGTTTCCGAAAGGCAACACGACGCCTCTATTG 1249
|||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||
Sbjct 1251 GTGGTGCATTTATCGATCTGGAGAAAACTGTTTCTGAAAGGCAGCATGATGCCTCTATTG 1310
Query 1250 GTTTTGGTGCTTCCGTTCGTACAAACATGAGTACTTCTGGGTTCAGTAGTGCTGCAGTAA 1309
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1311 GTTTTGGTGCTTCCGTTCGTACAAACATGAGTACTTCTGGGTTAAGTAGTGCTGCTGTAA 1370
Query 1310 CATCCTCCTTGTTGGAATCTTTACAAAGTGAAGATCTTGTTGCTTATGGTCTCATTCCTG 1369
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1371 CATCCTCCTTGTTGGAATCTTTACAAAGTGAAGATCTTGTTGCGTATGGTCTCATTCCTG 1430
Query 1370 AGTTCGTTGGAAGGTTACCCATCTTAGTGAGCTTATCAGCATTAAACGAAGATCAGCTTG 1429
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1431 AGTTTGTTGGAAGGTTACCCATCTTAGTGAGCTTATCCGCATTAAACGAAGATCAACTTG 1490
Query 1430 TACAGGTTCTCACAGAGCCTAAGAGTGCATTGGGTAAACAGTACAAGAAATTGTTTCGCA 1489
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1491 TACAGGTTCTCACAGAGCCTAAAAGTGCATTGGGTAAACAGTACAAGAAATTGTTTCGCA 1550
Query 1490 TGAACAATGTCCAACTGCATTTTACTGAAGGAGCAACGAGGCTAATTGCGAGGAAGGCTA 1549
||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 1551 TGAACAATGTCCAACTGCAATTTACTGAAGGAGCAACGAGGCTAATCGCAAGGAAAGCTA 1610
Query 1550 TGTCGAAGAACACTGGTGCACGTGGCTTACGGTCTATACTGGAAAGTATTCTCACCGAAG 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TGTCGAAGAACACTGGTGCACGTGGCTTACGGTCTATACTGGAAAGTATTCTCACCGAAG 1670
Query 1610 CAATGTTTGAGGTACCAGATAGCATCACGGAAGGATCACAGAGTATTAAGGCAGTTCTGG 1669
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1671 CAATGTTTGAGGTACCAGATAGCATCACGGAAGGATCACAGAGTATAAAGGCAGTTCTGG 1730
Query 1670 TGGATGAGGAGGCTGTTGGTTCAGTTGGAACCCCAGGATGTGGCGCAAAAATTCTTAAAG 1729
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1731 TGGATGAAGAGGCTGTTGGTTCAGTTGGGTCCCCAGGATGTGGCGCAAAAATTCTTAAAG 1790
Query 1730 GAGATAATGTGTTGCAACAATTTGTTGAAGAAACAGAGTCAAAGGAGAAGAGAAAGGAGG 1789
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1791 GAGATAATGTGTTGCAACAATTTGTTGAAGAAGCAGAGTCAAAGGAGAAGAGTAAGGAGG 1850
Query 1790 ATGACGCTAAGAGAGCTCAGAGTATGTAG 1818
|||| ||||||||||||||||||||||||
Sbjct 1851 ATGAAGCTAAGAGAGCTCAGAGTATGTAG 1879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5