BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495044
Length=2457
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49880.1 | Symbols: | mitotic checkpoint family protein | c... 3777 0.0
> AT5G49880.1 | Symbols: | mitotic checkpoint family protein |
chr5:20282165-20288084 FORWARD LENGTH=2630
Length=2630
Score = 3777 bits (2045), Expect = 0.0
Identities = 2260/2364 (96%), Gaps = 14/2364 (1%)
Strand=Plus/Plus
Query 23 aaaaaaaaGTGGCGCCTCTGCAATTTCAATTTTCAAATCC---TAATTTTTCTCTCGCTT 79
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 46 AAAAAAAAGTGGCGCCTCTGCAATTTCAATTTTCAAATCCTAATAATTTTTCTCTCGCTT 105
Query 80 CCCGGAGAACGGAACCCTAATTTCTCGACGCGA-ACATGATTTTGAGAACTCCGCCGCCG 138
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 106 CCCGGAGAACGGAACCCTAATTTCTCGACGC-AGACATGATTTTGAGAACTCCGCAGCCG 164
Query 139 AAGAGGCTCAGGTCCGACGCCGGAGATAGCCCCGTGCCCACCGGCGCTACTGGTTCCGGC 198
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 165 AAGAGGCTCAGGTCCGACGCCGGAGAAAGCCCCTTCCCCACCGGCGCTACTGGTTCCGGC 224
Query 199 AATCAGCTAATCATCTACGAAGATTCTCCTCTTCCTGCTTCTGCTCCGCTACAAACTTCT 258
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 225 AATCAGCTAATCATCTACGAAGATTCTCCTCTTCCTGCTCCTGCTCCGCTACAAACTTCT 284
Query 259 CATAATCATTCGGCGGATCAACACCTTTGCACCTATCAATGCCGCCAAATGGTTAAAGCT 318
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 285 CATGATCATTCGGCGGATCAACATCTTTGCACCTATCAATGCCGCCAAATGGTTAAAGCT 344
Query 319 GATGTTCTAGATGCTTTAAGCAAAGCAGAGAAACAAGTTGAGGAATATCAAACCAAATTG 378
|||||||||||||| || |||| ||||||||||||||||||||||| | ||||||||||
Sbjct 345 GATGTTCTAGATGCCTTGAGCACAGCAGAGAAACAAGTTGAGGAATCTAAAACCAAATTA 404
Query 379 CAGACTCTTAATGCCAACTTCACCGAAGCAGATGCTGAGAGAAAGCATTTTCGAGATAAA 438
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 405 CAGACTCTTAATGCCAACTTCACCGAAGCAGATGCTGAAAGAAAGCATTTTCGAGATAAA 464
Query 439 TTCTTATACTCAGAGCAAGAACTGGCTGCTGCCAAAGGGCGTGAGAAGATGCTTCAGGAG 498
|||||||||||||||||||| || |||||||| |||| ||||||||| ||||||||||||
Sbjct 465 TTCTTATACTCAGAGCAAGAGCTTGCTGCTGCTAAAGCGCGTGAGAAAATGCTTCAGGAG 524
Query 499 CAGC-TCTTAATGGAGATCAACAATTCTCAAGAGCGGTATACCAAAGAACTACAATCTTG 557
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CAGCTTCTT-ATGGAGATCAACAATTCTCAAGAGCGGTATACCAAAGAACTACAATCTTG 583
Query 558 CCATGAACTGGAGGTAAAATTTCAGAATGAAATGAACCTTCGAAAGAAAGCCGAGTCTTC 617
||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 584 CCATGAACTGGAGGTAAAACTTCAAAATGAAATGAACCTTCGAAAGAAAGCGGAGTCTTC 643
Query 618 TGCTGCAACAGCTGAAGAAAAAGCTAAACTTTTGGAGGATAAACTAACTCAGTTATCTGG 677
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 644 TGCTGCAACAGCTGAGGAAAAAGCTAAACTTTTGGAGGATAAACTAACTCAGCTATCTGG 703
Query 678 AAGTGTGGACAGGGAGAAGAAACGTCTCAACAATGATATTGCTCAATTGGGTAAAGAGGC 737
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 704 AAGTGTGGACAGGGAGAAGAAACGTCTCAACAATGATATTGCTCAACTGGGTAAAGAAGC 763
Query 738 AAAGCTTTCTGTATCTAGGATTGGTGCAGATCTTGAAAGGATGCAATGTAGGGCACACAA 797
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 764 AAAGCTTTCTGTGGCTAGGATTGGTGCAGATCTTGAAAGGATGCAATGTAGGGCACAAAA 823
Query 798 TGCTGAGACAGAATCAAATCTTTTAAGATCACAGCTTGAGCATCTTAAACTGAAATTTGA 857
||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 824 TGCTGAGACGGAATCAAATCTTTTAAGATCACAACTGGAGCATCTTAAACTGATATTTGA 883
Query 858 CGAGTGTTTGCAAGAAAAGACTGAAGTAGACAAGAAGCTGTCGTCATTCACTTCGGAGGC 917
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 884 CGAGTGTTTGCAAGAAAAGACTGAAGTAGACAAGAAGCTATCGTCATTCACTTCGGAGGC 943
Query 918 AGCATCTTCTTCAGATAACAGTGTATTGGTTAAACATCTTCAGGAGGAACTTAAACGCTA 977
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 944 AGCATCTTCTTCAGATAACAGTGTATTGGTTAAACATCTTCAGGAAGAACTTAAACGCTA 1003
Query 978 TGAAGCTGAAGTGCGAGAAGCTAGAAAATTAAGATCACGGCACTTAGATGCGGAGTTGTT 1037
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 1004 TGAAGCTGAAGTGCGAGAAGCTAGAAAGTTAAAATCACGGCATTTAGATGCGGAGTTGTT 1063
Query 1038 GAATGTAAAATTATTAGAAGAACAAAGCCGTAGGGAGAGGGCAGAGTCAGAGTTATCAAA 1097
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GAATGTGAACTTATTAGAAGAACAAAGCCGTAGGGAGAGGGCAGAGTCAGAGTTATCAAA 1123
Query 1098 ATTTCATGACTTGCAGCTAAGCTTGGAGAAGTTGGAGAATGAATTGTCCTCTTGGAAGCC 1157
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct 1124 ATTTCATGACTTGCAGCTAAGCATGGAAAAGTTGGAGAATGAATTGTCCTCTTGGAAGTC 1183
Query 1158 ATTGCTAAATGACATTCCTGGTGTTTCCTGTCCTGATGACATATTTATGAAATTCTCAGC 1217
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |
Sbjct 1184 ATTGCTAAATGACATTCCTGGTGTGTCCTGTCCTGATGACATAGTTATGAGATTCTCGGT 1243
Query 1218 GCTACAGAATGAGGTGGTTCAAAGCACTATGAAGACTGGGGAAGCAAGTACACGTATTAA 1277
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1244 GCTACAGAATGAGGTGGTTCAAAGCACTATGAAGATTGGGGAAGCAAGTACCCGTATTAA 1303
Query 1278 ACAACTGGAGGAGGCTCTGGAGGCTACACAACTTGGCAGACAGAATGCTGAAACTGAGGC 1337
||||||||||||| | |||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1304 ACAACTGGAGGAGACACTGGAGGCTATACAACTTGGCAGACAGAATGCTGTAAGTGAGGC 1363
Query 1338 TGCATTAGCGAAAGAGAAATCTGAGGCCCTCAAAACAGATGTGAAGAGGATTGAAGTAAT 1397
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1364 TGCATTAGCGAAAGAGAAATCTGAGGCTCTCAAAACAGACGTGAAGAGAATTGAAGTAAT 1423
Query 1398 GCTCACTTTGGTAACGGAGGAGAAAGAACAGTTGAAAGCTGTTGTTAATGAATTAAGGAA 1457
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GCTCACTTTGGTCACGGAGGAGAAAGAACAGTTGAAAGCTGTTGTTAATGAATTAAGGAA 1483
Query 1458 GTCAAACAGTGAAGGATCTGTGTCTGGAGCCGCAGATGGAACCCTTATTCAGGGGTTTGA 1517
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1484 GTCAAACAGTGAAGGATCTGTGTCTGGAGCCGCAGATGGAGCCCTTATTCAGGGGTTTGA 1543
Query 1518 ATCTTCTCTTGCAAAGAAGGAGAAATATATTAAGGATTTGGAGCAGGATCTAAGTGAACT 1577
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||
Sbjct 1544 ATCTTCTCTTGCAAAGAAGGAGAACTATATTAAGGATTTAGAGCAGGATCTAAATCAACT 1603
Query 1578 GAAGGATGTCAATAATCGCCAGCGTACTGAAATAGAACTTCTAAATGAGAAACTAGTCGA 1637
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1604 GAAGGATGTCAATAATCGTCAACGTACTGAAATAGAACTTCTAAATGAGAAACTAGTTGA 1663
Query 1638 TGAAGCAAGGAGGAATAAGTCGCTGGAAAGGGATAGTGATCGTCTTCGCTCTGAGATCTC 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 TGAAGCAAGGAGGAATAAGTCGCTGGAAAGGGATAGTGATCGTCTTCGCTCTGAGATCTC 1723
Query 1698 GTTACTGGAGTCAAAGCTGGGTCATGGTGATT-TCTCTGCCGCAAATACAAGGGTTTTGC 1756
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1724 TTTACTGGAGTCAAAGCTGGGTCATGGTGATTAT-TCTGCCGCAAATACAAGGGTTTTGC 1782
Query 1757 GCATGGTGAATACTCTTGGTGTTGAAGACGAGGCAAAACAAACAATCGAGGCTTTACAAG 1816
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1783 GCATGGTGAATACTCTTGGTGTTGAAAACGAGGCAAAACAAACAATAGAGGCTTTACAAG 1842
Query 1817 CTGAGTTACAGAAGTCAAAAGAAAGACTTCAAGCTGTTGAAGAATTAAAGAGCCAGACTG 1876
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1843 CTGAGTTACAGAAGACAAAAGAAAGACTTCAAGCTGTTGAAGAATTAAAGAGCCAGTCTG 1902
Query 1877 GAGATGCTGGGAAGCTAGTTGACTCTCATATAACTGGAAAGATTGCTCAACTAAAAGAGC 1936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 GAGATGCTGGGAAGCTAGTTGACTCTCATATAACTGGAAAGATTGCTCAACTAAAAGAGC 1962
Query 1937 AAATTGCTACACTTGAAAAACGTGAAGAGAGGTACAAAACTGTTTTCGCTGATAGAATTT 1996
||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1963 AAAATGCTACGCTTGAAAAACGTGAAGAGAGGTACAAAACTGTTTTTGCTGATAGAATTT 2022
Query 1997 CCGTGTTTAGAAGGGCTTGTTGTGAGCTTTTTGGTTATAAGATTGTAATGGACGAACATC 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 CCGTGTTTAGAAGGGCTTGTTGTGAGCTTTTTGGTTATAAGATTGTAATGGACGAACATC 2082
Query 2057 AGCGTCCCAATGGAATCCCAGTGACTCGGTTCACTCTCCAGTCTATATATGCCCAAAGTG 2116
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2083 AGCGTCCCAATGGAATCCCAGTGACTCGGTTTACTCTCCAGTCTATATATGCTCAAAGTG 2142
Query 2117 ATGATGAAAAACTCGAGTTTGAATACGAGTCAGGAAACACCAGTATTCTAAACAATGAGT 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 ATGATGAAAAACTCGAGTTTGAATACGAGTCAGGAAACACCAGTATTCTAAACAATGAGT 2202
Query 2177 ACGCCTCTCAGGGTGACATAGCGAAGCAGATAGAAATATTCATCAGGAAGTTCAACTCGA 2236
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2203 ATGCCTCTCAGGGCGACATAGCGAAGCAGATAGAAATATTCATCAGGAAATTCAACTCGA 2262
Query 2237 TTCCAGCTTTTACCGCCAACTTAACAATGGAATCATTCAACCGCCGCACGCTATATTGAG 2296
||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 2263 TTCCAGCTTTTACAGCCAACTTAACGATGGAATCATTCAACCGTCGGACGCTATATTGAG 2322
Query 2297 AG-ATCTGATTCCTTATTTCCAACCCC-TGTTTTGTATATTTCTAAATCCTGCTGAATAG 2354
|| | ||| |||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 2323 AGCA-CTGCGTCCTTATTTCCAACTCTGTGTTTTGTATATTTCTAAAGCCTGCTGAATAG 2381
Query 2355 AAACTGAAACTC-AAAGGCTGCAG 2377
|||||||||||| |||| | ||||
Sbjct 2382 AAACTGAAACTCGAAAGCC-GCAG 2404
Score = 119 bits (64), Expect = 1e-25
Identities = 74/79 (94%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 2378 TCTGGTTCATTATGTCTGCTAGAATTGTGGTGTCAGTAACTCTATTTTGGTATGAAAGAA 2437
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2435 TCTGGTTCGTTATGTCTGCTATAATTGTGGTGTCAGTAACTCTATTTTGGTATGAAAGAA 2494
Query 2438 ATTGGTTTGGATTTACTCA 2456
| | |||| ||||||||||
Sbjct 2495 ACTAGTTTCGATTTACTCA 2513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121905671490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5