BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495050
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49950.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2724 0.0
> AT5G49950.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:20319733-20323616 REVERSE LENGTH=1816
Length=1816
Score = 2724 bits (1475), Expect = 0.0
Identities = 1606/1671 (96%), Gaps = 2/1671 (0%)
Strand=Plus/Plus
Query 1 CAAAAGATCTTTACTTTGAGATTGTCCCCATGAATTGCGCAATCACAGAGGATGATTTGA 60
|||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 36 CAAAAGGTCTTTACTTTGAGATTGTCACTATGAATTGCGCAATCACAGAGGATGATTTGA 95
Query 61 TCTCTCCTTACCTCATCATCTTCAAATCGCTCTTACTCATCCCAATCTCTCACTATCTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 TCTCTCCTTACCTCATCATCTTCAAATCGCTCTTACTCATCCCAATCTCTCACTATCTCA 155
Query 121 TCTTCTTCTTCCTCACAATCCTAGTGTTT-CTCTACTTCTTCCTCGAGATTCATATCCCT 179
|||||||||||||||||||| || | ||| |||||||||||||| ||||||||| | |||
Sbjct 156 TCTTCTTCTTCCTCACAATCTTACT-TTTCCTCTACTTCTTCCTAGAGATTCATTTTCCT 214
Query 180 AAAGCAGACCCTATCTCTCTCACTTTCAATCCAAACTCTGAGTTCTGCCAGTTTATTGTC 239
|||||||| ||||||||||| || ||||||||||||||||| |||||| |||||||||||
Sbjct 215 AAAGCAGATCCTATCTCTCTTACCTTCAATCCAAACTCTGACTTCTGCAAGTTTATTGTC 274
Query 240 TCCAAGTGTCGTCTCCTTCATGGACGATACTTTCCTACGTTTTGGCTTTCAAGCCCTCAT 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 275 TCCAAGTGTCGTCTCCTTCATGGACGATACTTTCCTACGTTCTGGCTTTCAAGCCCTCAT 334
Query 300 CTTCAAACAGCTTTCCTTAGCCTTTTTGGAAAGTCTCCTCCTTTTTCCTATAAAAGAATT 359
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 335 CTTCAAACAGCTTTCCTTACCCTTTTTGGAAAGTCTCCTCCTTTCTCCTATAAGCGAATT 394
Query 360 CTCTATCAGGCAACAGATGGTGGCACAATTGCTTTGGACTGGTTAATGCATTCTGATGTT 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 395 CTCTATCAGGCAACAGATGGTGGCACAATTGCTTTGGATTGGTTAATGCATTCTGATGTT 454
Query 420 GTGGAAGGCATATCTCAGGTGGTCAATGACTCAACTTCAGGAACTGATAGGACTCCAATT 479
|||||||| |||||||| |||||||||| ||||| | |||||||||||||||||||||||
Sbjct 455 GTGGAAGGTATATCTCAAGTGGTCAATGCCTCAAATCCAGGAACTGATAGGACTCCAATT 514
Query 480 GCTATTGTGGTTCCAGGGCTCACTAGTGATTCTTCTGCTGCATATATTAAACATATTGCC 539
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GCTATTATAGTTCCAGGGCTCACTAGTGATTCTTCTGCTGCATATATTAAACATATTGCC 574
Query 540 TTCAGGCTGGCAAAGGAAGGATGGAATGTTGTTGTGCAAAACCACCGTGGACTTGGAGGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TTCAGGCTGGCAAAGGAAGGATGGAATGTTGTTGTGCAAAACCACCGTGGACTTGGAGGG 634
Query 600 ATATCTTTAACTTCTGACTGCGTCTACACTGCTGGGTGGACAGAAGATCTTCGGAAAGTA 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 635 ATATCTTTAACTTCTGACTGCGTCTACACTGCCGGGTGGACAGAAGATCTTCGGAAAGTA 694
Query 660 ATTGATCACATCCATTCTCAGTTCCCAGAGGCGCCTTTGTTTGCTGTTGGAACAAGCATT 719
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 695 ATTGCTCACATCCATTCTCAGTTCCCAGAGGCTCCTTTGTTTGCTGTTGGAACAAGCATT 754
Query 720 GGTGCCAACGTTCTGGTAAAATATCTTGGGGAGGATGGGCCAAATACACCTCTTATTGGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GGTGCCAACGTTCTGGTAAAATATCTTGGGGAGGATGGGCCAAATACACCTCTTATTGGA 814
Query 780 GCTACTGCTGTGTGTTCTCCTTGGGATCTATTGATATGTGACCGATTTATCAACCGCAAA 839
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 815 GCTACTGCTGTGTGTTCTCCTTGGGATCTATTGATATGTGATCGATTTATCAACCGCAAA 874
Query 840 CTCGTGCAAAAATTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATTG 899
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CTCGTGCAAAAAGTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATTG 934
Query 900 CACCATTCTATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAGTCACGTTCAGTT 959
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 CACCATTCCATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAGTCACGTTCAGTT 994
Query 960 CGAGAGTTTGACAACTACGCCACCAGGCTTGTTGCCAAATTCGAGACAACTGATACATAC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CGAGAGTTTGACAACTACGCCACCAGGCTTGTTGCCAAATTCGAGACAACTGATACATAC 1054
Query 1020 TATAGACGTTCAAGCAGTTCACAATATGTGGGAAATGTCGCTGTTCCGCTCCTTTGCATC 1079
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1055 TATAGACGTTCAAGCAGTTCACAATATGTGGAAAATGTCGCTGTTCCGCTCCTTTGCATC 1114
Query 1080 AGTGCTTTGGATGATCCAGTTTGTACTAGGGAAGCTATTCCTTGGGATGAATGTAGGGCA 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1115 AGTGCTTTGGATGATCCAGTTTGTACTAGAGAAGCTATTCCTTGGGATGAATGTAGGGCA 1174
Query 1140 AACAAAAACATAGTTCTCGCAACCACAACACATGGTGGTCATCTTGCTTACTATGAAGGG 1199
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1175 AACAAAAACATAGTTCTGGCTACCACAACACATGGTGGTCATCTAGCTTACTATGAAGGG 1234
Query 1200 TTGACAGCAACAAGCATGTGGTGGGCAAGGGCTGTGCAAGAATATTTTGAAGTGCTACTC 1259
|||||||| |||||||||||||| |||||| ||| || |||||||||||||||||||||
Sbjct 1235 TTGACAGCGTCAAGCATGTGGTGGACAAGGGTTGTACACGAATATTTTGAAGTGCTACTC 1294
Query 1260 TCCAGCCCCTTTGCAGACAGAAGACAGAAGATCATCCCCGAACCATTAGGATCTTCGATT 1319
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1295 TCCAGCCCCTTTGCAGACAGAAGACACAAGATCATCCCCGAACCATTGGGATCTTCGATT 1354
Query 1320 GATCAGGGACCATTCGTGGATGCTGGAGAAGACGGGATGGTTGCTGCTGCAAATGAAGTG 1379
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1355 GATCAGGGACCATTCGTGGATGCTGGAGAACACGGGATGGTTGCTGCTGCAAGTGAAGTG 1414
Query 1380 GACACAACAAGACCTGATGTAGAACCAGAGGATATTGCTCAAATTGATGAAAAGACAAGT 1439
|||||||||||| |||||| |||||||||||||| |||||||||| ||| ||||||||||
Sbjct 1415 GACACAACAAGAGCTGATGCAGAACCAGAGGATAATGCTCAAATTTATGTAAAGACAAGT 1474
Query 1440 AATTATCCACACAAGGACAATACTCTTCAAGTTTATAACAGTTTACTCGGTCCTTTGAAG 1499
||| ||| |||||||||||||| || |||||||||||||| | |||||||||||||||||
Sbjct 1475 AATCATCTACACAAGGACAATAATCCTCAAGTTTATAACAATATACTCGGTCCTTTGAAG 1534
Query 1500 AAGAGAGTGGATCAGCTTTCAAGATACAGCCGGAAATCGATTTGGCTATTGGCATACATT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 AAGAGAGTGGATCAGCTTTCAAGATACAGCCGGAAATCGATTTGGCTATTGGCATACATT 1594
Query 1560 GCTATAGTCACGACGTGGCCACTTGTAGGACCTGCACTTTTGTTTTCAATCAAGAGGAGA 1619
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1595 GCTATAGTCACGACGTGGCCACTAGTAGGACCTGCACTTTTGTTTTCAATTAAGAGAAGA 1654
Query 1620 TTCAGAAAGCTCGTAGAAAAATAGAAATCATATTCTACTAATGCAAAGTAA 1670
||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1655 TTCAGAAAGCTCGTAGAAAAATAGAGATCATATTCTACTAGTGCAAAGTAA 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82529695980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5