BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495052
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49970.1 | Symbols: ATPPOX, PDX3, PPOX | pyridoxin (pyrodoxa... 2575 0.0
> AT5G49970.1 | Symbols: ATPPOX, PDX3, PPOX | pyridoxin (pyrodoxamine)
5'-phosphate oxidase | chr5:20329187-20333155 FORWARD
LENGTH=1874
Length=1874
Score = 2575 bits (1394), Expect = 0.0
Identities = 1704/1846 (92%), Gaps = 51/1846 (3%)
Strand=Plus/Plus
Query 1 ATTGGGCTAAATGAGGAATGTGATGCGTAAAGTGAGAACAATGACAttcaccttcctcct 60
|||||||||||||||||||||||| || | ||| | ||||||||||||||||||||| ||
Sbjct 17 ATTGGGCTAAATGAGGAATGTGATACGCAGAGTCACAACAATGACATTCACCTTCCTTCT 76
Query 61 ccaatcaccaccaccactcccaatttct-c--ctcctcctcaattctctctctactc-tc 116
||||| |||||||||||||||||||| | ||||||||||||||||||| | ||| ||
Sbjct 77 CCAAT---CACCACCACTCCCAATTTCTCCATCTCCTCCTCAATTCTCTCTTTCCTCTTC 133
Query 117 ttcctctA-C--CCACCCAGCGATTCCTCACTCCAAGCCACGGCTCTCGTCTACGCTCAG 173
|||| || | || ||||||||| ||||||||||||| |||||||| | || |
Sbjct 134 -TCCTTTATCAAAAACGCAGCGATTCATCACTCCAAGCCAGGGCTCTCG--T---CT-A- 185
Query 174 GTTCGGTGAGGACTCTGTGTACCAAA-TCCATCATACCAAACATGGAGGATTCGGGATCA 232
| ||||| ||||||||||| | |||||||||||||||| | ||||| ||||||
Sbjct 186 ---C-----GGACTTTGTGTACCAAAGT-CATCATACCAAACATGCAAGATTCAGGATCA 236
Query 233 CCACCACTCTCTTATCTTACTCAGCGAGAAGCCGCTGAGATTGATGAAACCTTGATGGGT 292
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 237 CCACCACTCTCTTATCTTACTCAGCGAGAAGCCGCTGAGATTGATGAGACCTTGATGGGT 296
Query 293 CCTCTTGGCTTCTCCGTTGATCAGCTCATGGAATTGGCTGGTCTTAGCGTCGCTA-CTTC 351
|||||||| |||||| ||||||||||||||||||||||||||||||| || || | ||||
Sbjct 297 CCTCTTGGTTTCTCCATTGATCAGCTCATGGAATTGGCTGGTCTTAGTGTGGC-AGCTTC 355
Query 352 AATTGCTGAGGTTTATAAACCGGGAGAATATAGCCGGGTTCTAGCAATCTGTGGTCCTGG 411
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 356 AATTGCTGAGGTTTATAAACCGGAAGAATATAGCCGGGTTCTAGCTATCTGTGGTCCTGG 415
Query 412 AAACAATGGTGGTGATGGTTTGGTGGCGGCGAGGCATCTGCACCACTTTGGATATAAACC 471
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 GAACAATGGTGGTGATGGTTTGGTGGCGGCGAGGCATTTGCACCACTTTGGATATAAACC 475
Query 472 GTTTATTTGTTATCCCAAACGTACAGCCAAGCCGCTTTATACTGGACTGGTCACTCAGTT 531
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 GTTTATTTGTTATCCCAAACGTACAGCCAAGCCACTTTATACTGGACTGGTCACTCAGTT 535
Query 532 GGAGTCACTCTCAGTCCCATTTGTTTCAGCTGATGATCTGCCGGAAGACTTGTCAAAGGA 591
||| |||||||||||||| |||||||| | ||| ||||||||||| ||||||||||||||
Sbjct 536 GGATTCACTCTCAGTCCCTTTTGTTTCCGTTGAGGATCTGCCGGATGACTTGTCAAAGGA 595
Query 592 CTTTGATGTTATTGTAGATGCAATGTTTGGGTTTTCATTTCATGGTGCTCCAAGGCCTCC 651
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 596 CTTTGATGTTATTGTAGATGCAATGTTTGGGTTTTCATTCCATGGAGCTCCCAGGCCTCC 655
Query 652 TTTTGATGACCTCATCCGGAGATTGGTGTCCTTGCAGAACTATGAGCAGACGCTCCAAAA 711
||||||||||||||||||| |||| || || || ||||||||||||||||| || |||||
Sbjct 656 TTTTGATGACCTCATCCGGCGATTAGTATCGTTACAGAACTATGAGCAGACTCTTCAAAA 715
Query 712 ACACCCAGTCATCGTCTCTGTAGATATTCCCTCTGGTTGGCACGTTGAAGAAGGAGACCA 771
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACACCCAGTCATTGTCTCTGTGGATATTCCCTCTGGTTGGCACGTTGAAGAAGGAGACCA 775
Query 772 TGATGATGGAGGAATTAAGCCTGATATGTTGGTATCTTTGACTGCCCCAAAATTATGTGC 831
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGAAGATGGAGGAATTAAGCCTGATATGTTGGTATCTTTGACTGCCCCAAAATTATGTGC 835
Query 832 AAAGAGATTCCGTGGCCCTCATCACTTTTTAGGGGGGAGATTTGTACCACCTACTGTTGC 891
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 836 AAAGAGATTCCGTGGCCCTCATCACTTTTTAGGTGGGAGATTTGTACCACCTTCTGTTGC 895
Query 892 TGAAAAATATAAGCTCGAGCTCCCTAGTTACCCTGGGACATCGATGTGTGTTAGAATTGG 951
||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 896 AGAAAAGTATAAGCTGGAGCTCCCTAGTTACCCAGGGACATCTATGTGTGTTAGAATTGG 955
Query 952 TAAACCTCCCAAAGTTGACATTTCTGCTATGAGAGTGAACTATGTCTCTCCAGAATTGCT 1011
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 956 TAAACCTCCCAAAGTTGACATATCTGCTATGAGAGTGAACTATGTCTCTCCAGAATTGCT 1015
Query 1012 TGAGGAGCAGGTTGAAACCGATCCTACGGTACAGTTCCGTAAATGGTTTGATGAGGCAGT 1071
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 TGAGGAGCAGGTTGAAACTGATCCTACGGTACAGTTTCGTAAATGGTTTGATGAGGCAGT 1075
Query 1072 TGCTGCTGGATTGAGAGAAACAAATGCTATGGCTTTGTGTACAGCGAACAAGGATAGAAA 1131
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1076 TGCTGCTGGATTGAGAGAAACAAATGCTATGGCTTTGTCTACAGCGAACAAGGACAAAAA 1135
Query 1132 ACCCTCATCAAGAATGGTTTTACTAAAAGGATTTGATGCGAATGGATTTGTCTGGTTCAC 1191
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1136 ACCCTCATCAAGAATGGTTTTACTAAAAGGATTTGATGAGAATGGATTTGTCTGGTTCAC 1195
Query 1192 CAACTACGAAAGTAAAAAGGGTTCTGATTTATCAGAAAATCCTAGTGCAGCACTTCTTTT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CAACTACGAAAGTAAAAAGGGTTCTGATTTATCAGAAAATCCTAGTGCAGCACTTCTTTT 1255
Query 1252 TTACTGGGAAAGTTTGAACCGTCAGGTAAGAATTGAAGGACCAGTGGAGAGAATACCTGA 1311
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1256 TTACTGGGAAATTTTGAACCGTCAGGTAAGAATTGAAGGACCAGTGGAAAGAATACCTGA 1315
Query 1312 GTCAGAATCGGAGAATTACTTTCATAGTCGTCCTAGAGGAAGTCAGATTGGAGCTATTGT 1371
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GTCAGAATCCGAGAATTACTTTCATAGTCGTCCTAGAGGAAGTCAGATTGGAGCTATTGT 1375
Query 1372 TAGCAAGCAGAGTTCTGTTGTACCTGGCAGGCATGTTTTATACGATGAGTATGAAGAATT 1431
||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
Sbjct 1376 TAGCAAGCAGAGTTCTGTTGTACCTGGCAGGCATGTTCTATACGACGAATATGAAGAACT 1435
Query 1432 GACaaaaaaaTATTCAGATGGAAGTGTGATACCAAAGCCGAAAAACTGGGGAGGATTCAG 1491
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GACAAAACAATATTCGGATGGAAGTGTGATACCAAAGCCGAAAAACTGGGGAGGATTCAG 1495
Query 1492 ACTTAAACCAAACCTTTTCGAGTTTTGGCAGGGACAGCCATCTCGTTTACATGACAGGCT 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 ACTTAAACCAAACCTTTTCGAGTTTTGGCAGGGACAGCCATCTCGTTTACATGACAGGCT 1555
Query 1552 GCAGTATTCTCTGCAAGACGTAAACGGGAATCCTGCATGGAAAATTTATAGATTGGCCCC 1611
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1556 GCAGTATTCTCTGCAAGACGTAAACGGGAATCCTGCGTGGAAAATTCATAGATTGGCCCC 1615
Query 1612 ATGACTTCTACTCACTACTTCTTTCCCTGTCAAGAAGATGACAATTTGGGTTTTCATATC 1671
|||||||||||||||||| |||| |||||| ||||| ||| | |||| | || ||||||
Sbjct 1616 ATGACTTCTACTCACTACCTCTT-CCCTGTGAAGAACATGGCTCTTTGTGATT-CATATC 1673
Query 1672 AAACCATTACGATGAGAATAA-ATTTTAAGTATAGCTGTATAG--A---ATGT-C--ACT 1722
|||||||||| |||||||||| ||||||| ||||||||||||| | || | | | |
Sbjct 1674 AAACCATTACAATGAGAATAAGATTTTAATTATAGCTGTATAGCGATTTATCTTCTTAAT 1733
Query 1723 ---A--AAAT-AGAAGTGCTTTTCCATTTTCATCACTTAGTAATGTGATTTATTTTAGCT 1776
| |||| | |||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 1734 GTGACTAAATTATTAGTGCTTTTCCATTTTCAGCACTTAATACTGTGATTTATTTTAGCT 1793
Query 1777 ATTT-TGCTTGATAA-CCAATA-AAAGACACAACTTGTGTCTTGAC 1819
||| || ||||||| |||||| ||||| |||||||||||||||||
Sbjct 1794 -TTTGTGTTTGATAAACCAATACAAAGATACAACTTGTGTCTTGAC 1838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90009577185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5