BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495054
Length=2310
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 | chr5:2033... 3535 0.0
AT4G24390.2 | Symbols: | RNI-like superfamily protein | chr4:1... 1456 0.0
> AT5G49980.1 | Symbols: AFB5 | auxin F-box protein 5 | chr5:20333964-20336665
REVERSE LENGTH=2450
Length=2450
Score = 3535 bits (1914), Expect = 0.0
Identities = 2206/2341 (94%), Gaps = 43/2341 (2%)
Strand=Plus/Plus
Query 1 AAATAAGCCCCAAATAATGGAGACGAAGTGGAGAGAGAAAGCTCCCACTCTCTCACACCC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAATAATCCCCAAATAATGGAGACGAAGTGGAGAGAGAAAGCTCCCACTCTCTCACACCC 63
Query 61 CAAAGcttcttcttcttcctcttcctcttcctcttcttcttctctaatctgaatccaaag 120
|||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 64 CAAAGCTTCTTCTTCTTCTTCCTCTTCTTCCTCTTCCTCTTCTCTAATCTGAATCCAAAG 123
Query 121 cctctctcttTATGACACAAGATCGCTCAGAAATGTCTGAAGATGACGACGACCAACAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 CCTCTCTCTTTATGACACAAGATCGCTCAGAAATGTCTGAAGATGACGATGACCAACAAT 183
Query 181 CTTCACCGTTGGATCTACCCTCTACCGCC--A--T-A-----GCT--TCTTCCTCTACAC 228
|| |||||||||||||||||||||||||| | | | ||| ||||||||| |||
Sbjct 184 CTCCACCGTTGGATCTACCCTCTACCGCCATAGCTGATCCTTGCTCATCTTCCTCTTCAC 243
Query 229 CAAACAAATCTCGTAACTGTATCTCAAAGTCTCAAACTTTCCCTGACCATGTTCTCGAAA 288
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 244 CAAACAAATCTCGTAACTGTATCTCAAATTCTCAAACTTTCCCTGACCATGTTCTCGAAA 303
Query 289 ACGTTCTTGAGAACGTTCTTCAGTTCCTAGATTCAAGATGTGACCGTAACGCTGCTTCTT 348
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ACGTACTTGAGAACGTTCTTCAGTTCCTAGATTCAAGATGTGACCGTAACGCTGCTTCTC 363
Query 349 TAGTTTGCAAATCTTGGTGGCGTGTTGAAGCTTTGACTCGATCTGAGGTTTTTATTGGTA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TAGTTTGCAAATCTTGGTGGCGTGTTGAAGCTTTGACTCGATCTGAGGTTTTTATTGGTA 423
Query 409 ACTGTTACGCTCTTTCTCCGGCGAGGTTGACTCAGAGATTCAAGCGTGTTAGGTCACTTG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 424 ACTGTTACGCTCTTTCTCCGGCGAGGTTGACTCAGAGATTCAAGCGTGTTAGGTCTCTTG 483
Query 469 TGCTTAAAGGGAAACCTAGGTTTGCTGATTTCAATCTCATGCCTCCTGATTGGGGTGCTA 528
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TGCTGAAAGGGAAACCTAGGTTTGCTGATTTCAATCTCATGCCTCCTGATTGGGGTGCTA 543
Query 529 ATTTTGCTCCTTGGGTTTCTACTATGGCTAAAGCTTATCCTTGGCTTGAGAAAGTTGATT 588
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 544 ATTTTGCTCCTTGGGTTTCTACTATGGCTCAAGCTTATCCTTGTCTTGAGAAAGTTGATT 603
Query 589 TGAAAAGGATGTTTGTTACTGATGATGATTTAGCTCTTCTTGCTGACTCTTTTCCTGGGT 648
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TGAAGAGGATGTTTGTTACTGATGATGATTTAGCTCTTCTTGCTGACTCTTTTCCTGGGT 663
Query 649 TTAAAGAGCTTATCTTGGTTTGTTGTGAAGGTTTTGGTACTAGTGGTAT-TGCTATTGTT 707
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 664 TTAAAGAGCTTATCTTGGTTTGTTGTGAAGGTTTTGGTACTAGTGGTATCT-CTATTGTT 722
Query 708 ACCAATAAGTGCAGAAAGCTGAAAGTGCTTGATTTGATTGAGTCTGAGGTTACGGATGAT 767
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 723 GCCAACAAGTGCAGAAAGCTGAAAGTGCTTGATTTGATTGAGTCTGAGGTCACGGATGAT 782
Query 768 GAAGTGGATTGGATTTCTTGTTTCCCTGAGGATGTAACTAGTCTTGAA-TCTTTAGCTTT 826
|||||||||||||| |||||||||||||||||||||||| || ||| | |||||||||||
Sbjct 783 GAAGTGGATTGGATCTCTTGTTTCCCTGAGGATGTAACTTGT-TTGGAGTCTTTAGCTTT 841
Query 827 TGACTGTGTGGAAGCTCCTATCAATTTTAAGGCGCTTGAGGGTCTTGTTGCTAGGTCACC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TGACTGTGTGGAAGCTCCTATCAATTTTAAGGCGCTTGAGGGTCTTGTTGCTAGGTCACC 901
Query 887 GTTCTTGAAGAAACTTAGGCTGAACAGGTTTGTGTCCCTTGTGGAGCTACATCGTCTGCT 946
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 902 GTTCTTGAAGAAACTTAGGCTAAACAGGTTTGTGTCTCTTGTGGAGCTACATCGTCTGCT 961
Query 947 ACTTGGAGCTCCACAGCTTACTAGTCTTGGGACAGGTTCATTTAGCCATGATGAGGAACC 1006
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 962 ACTTGGAGCTCCACAGCTTACTAGTCTTGGGACTGGTTCATTTAGCCATGATGAGGAACC 1021
Query 1007 TCGGAGTGAGCAAGAACCAGATTATGCTGCTGCATTTCGTGCTTGTAAATCTGTTGTTTG 1066
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1022 TCAGAGTGAGCAAGAACCAGATTATGCTGCTGCATTTCGTGCTTGTAAATCTGTAGTTTG 1081
Query 1067 CCTGTCAGGATTTAGGGAGTTGATGCCGGAGTATCTTCCAGCTATCTTTCCGGTGTGCGC 1126
| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CTTGTCAGGGTTTAGAGAGTTGATGCCGGAGTATCTTCCAGCTATCTTTCCGGTGTGCGC 1141
Query 1127 TAATCTCACTTCCTTGAACTTCAGTTATGCTAATATTTCTCCTGACATGTTTAAGCCCAT 1186
||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1142 TAATCTCACCTCCCTGAACTTCAGTTATGCTAACATTTCTCCTGACATGTTCAAGCCCAT 1201
Query 1187 CATACTCAATTGCCACAAACTCCAGGTGTTCTGGGCTCTTGACTCAATATGTGATGAAGG 1246
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1202 CATACTCAATTGCCACAAACTCCAGGTGTTCTGGGCCCTTGATTCAATATGTGATGAAGG 1261
Query 1247 ACTACAGGCAGTTGCTGCAACTTGCAAGGAACTCCGTGAACTCCGAATCTTCCCTTTTGA 1306
||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1262 ACTACAGGCAGTTGCAGCCACTTGCAAGGAACTCCGTGAACTCAGGATCTTCCCTTTTGA 1321
Query 1307 TCCTCGGGAAGACAGTGAAGGTCCCGTCTCTGAATTAGGCCTCCAAGCAATCTCTGAGGG 1366
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1322 TCCTCGGGAAGACAGTGAAGGTCCTGTCTCTGAATTAGGCCTCCAAGCAATCTCCGAGGG 1381
Query 1367 TTGTAGGAAACTAGAATCTATTCTCTACTTTTGCCAGCGCATGACTAATGCTGCCGTGAT 1426
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1382 TTGTAGGAAACTAGAATCTATTCTCTACTTTTGCCAGCGCATGACTAATGCCGCTGTGAT 1441
Query 1427 AGCCATGTCAGAAAACTGTCCTGAGCTTACTGTGTTTAGGCTGTGCATAATGGGTCGACA 1486
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1442 AGCCATGTCAGAGAACTGTCCAGAGCTTACTGTGTTTAGGCTGTGCATAATGGGTCGACA 1501
Query 1487 TAGGCCTGACCATGTGACAGGGAAGCCTATGGACGAGGGTTTTGGTGCTATTGTTAAAAA 1546
||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1502 TAGGCCTGACCATGTAACAGGAAAGCCTATGGACGAGGGATTTGGTGCCATTGTTAAAAA 1561
Query 1547 CTGCAAGAAGCTAACCCGACTTGCAGTGTCAGGCTTGCTGACAGATCAAGCTTTTAGGTA 1606
||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1562 CTGCAAGAAGCTAACTCGCCTTGCAGTGTCGGGATTGCTGACAGATCAAGCTTTTAGGTA 1621
Query 1607 TATGGGTGAGTATGGGAAATTGGTCCGTACGCTTTCAGTAGCTTTTGCTGGGGATAGTGA 1666
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1622 TATGGGTGAGTATGGGAAATTGGTCCGTACGCTTTCAGTAGCTTTTGCAGGGGACAGTGA 1681
Query 1667 CATGGCTCTGAGACATGTCCTTGAAGGTTGCCCTAGACTGCAAAAACTTGAGATAAGGGA 1726
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1682 CATGGCTCTGAGACATGTCCTAGAAGGTTGCCCTAGACTGCAGAAACTTGAGATAAGGGA 1741
Query 1727 CAGTCCGTTTGGAGATGTTGCGTTACGCTCTGGTATGCATCGTTATTACAACATGAGGTT 1786
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1742 CAGTCCCTTTGGAGATGTTGCATTACGGTCTGGTATGCATCGCTATTACAACATGAGGTT 1801
Query 1787 TGTTTGGATGTCGGCATGTAGCTTGTCAAAGGGATGCTGCAAGGATATTGCACGCGTGAT 1846
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 1802 TGTTTGGATGTCAGCATGTAGCTTGTCTAAGGGATGCTGCAAGGATATTGCACGAGCAAT 1861
Query 1847 GCCGAATCTAGTTGTGGAAGTAATTGGGTCAGATGATGATGACGACAATAGGGATTATGT 1906
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1862 GCCGAATCTAGTTGTGGAAGTAATTGGATCGGATGATGATGATGACAATAGGGATTATGT 1921
Query 1907 TGAGACTTTATACATGTATCGGTCTCTTGATGGTCCAAGAAATGATGCACCAAAGTTCGT 1966
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1922 CGAGACTTTATACATGTATCGGTCTCTTGATGGTCCAAGGAATGATGCACCAAAGTTCGT 1981
Query 1967 CACGATTTTATAGAACGAGGTGCATTTCCGTGTTACCGATTTTTAAGAAGGGGAGTGAAA 2026
|||||||||||||||||||| ||||||||||||| ||| ||||||||| ||| | |||||
Sbjct 1982 CACGATTTTATAGAACGAGGAGCATTTCCGTGTTTCCGTTTTTTAAGACGGGAA-TGAAA 2040
Query 2027 TGGGTAGGTGTAGGAGGCTCAAatgatgatgatgatgatggtgtcatcagaggcacacta 2086
|||||| |||||||| ||||| |||||||||| | ||||| ||||||||||||||||
Sbjct 2041 TGGGTAAGTGTAGGAAGCTCA---GATGATGATG--G-TGGTGGCATCAGAGGCACACTA 2094
Query 2087 catgattgttgttgatgatgtgatgatgatgatgG---TTGGGAGGAATGCAAGATTGTT 2143
||||||||||| |||||| ||||| || | ||| ||||||||||||||||||||||
Sbjct 2095 CATGATTGTTGATGATGAA-TGATGGTGGT--TGGGACTTGGGAGGAATGCAAGATTGTT 2151
Query 2144 GTATCATTAttttctttttt-atttttGGGTTTAAAAGATCTTATTTGGTTGGTTAGGTG 2202
|||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||
Sbjct 2152 GTATCATTATTTTCTTTTTTTATTTTTGGGTTCAAAAGATGTTATTTGGGTGGTTAGGTG 2211
Query 2203 GAACAATGGATGTATGTTTTGGGAGAAACAGTGTTAGTT-G---G-T---T-----CTAA 2249
||||| ||||||||||||||||||| | | ||||||||| | | | | ||||
Sbjct 2212 GAACAGTGGATGTATGTTTTGGGAGCATCGGTGTTAGTTAGACAGCTGAGTTGGTTCTAA 2271
Query 2250 TAAGCTGCACTTTTGGCTCTCTCTAGTTGTTGTTGTTGAGAAACTAATGAGACATTTCTC 2309
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2272 TAAGCTGCACTTTTGGCTCTCTCTAGTTGTTGTTGTTGAGAAACTAATGAGACATCTCTC 2331
Query 2310 T 2310
|
Sbjct 2332 T 2332
> AT4G24390.2 | Symbols: | RNI-like superfamily protein | chr4:12613590-12616117
REVERSE LENGTH=2342
Length=2342
Score = 1456 bits (788), Expect = 0.0
Identities = 1439/1747 (82%), Gaps = 69/1747 (4%)
Strand=Plus/Plus
Query 276 CATGTTCTCGAAAACGTTCTT-GAGAACGTTCTTCAGTTCCTAGA-TTCAAGATGTGACC 333
||||| || || |||||| || |||||||| ||||||||||| | ||| ||||| || |
Sbjct 308 CATGTCCTTGAGAACGTT-TTAGAGAACGTGCTTCAGTTCCT-CACTTCCAGATGCGATC 365
Query 334 GTAACGCTGCT-TCTTTAGTTTGCAAATCTTGGTGGCGTGTTGAAGCTTTGACTCGATCT 392
| ||||| | | || || || |||| ||| |||| || || || ||| |||||||| |
Sbjct 366 GCAACGCAG-TCTCATTGGTCTGCAGATCGTGGTATCGCGTCGAGGCTCAGACTCGAT-T 423
Query 393 -GAGGTTTTTATTGGTAACTGTTACGCTCTTTCTCCGGCGAGG-TTGACTCAGAGATTCA 450
|||||||||||||| ||||||||| | || ||||| || || || | ||| | ||||
Sbjct 424 AGAGGTTTTTATTGGAAACTGTTACTCGCTCTCTCCTGCTCGGCTT-ATTCACCGGTTCA 482
Query 451 AGCGTGTTAGGTCACTTGTGCTTAAAGGGAAACCTAGGTTTGCTGATTTCAATCTCATGC 510
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 483 AGCGTGTTAGGTCTCTTGTGCTTAAAGGGAAACCTAGGTTTGCTGATTTTAATCTCATGC 542
Query 511 CTCCTGATTGGGGTGCT-AATTTTGCTCCTTGGGTTTCTACTATGGCTAAAGCTTATCCT 569
||||| ||||||| ||| |||| | ||||||||||| || ||| ||||| |||||||||
Sbjct 543 CTCCTAATTGGGGAGCTCAATTCT-CTCCTTGGGTTGCTGCTACAGCTAAGGCTTATCCT 601
Query 570 TGGCTTGAGAAAGTTGATTTGAAAAGGATGTTTGTTACTGATGATGATTTAGCTCTTCTT 629
||||| ||||| ||| ||||||| | ||||||||||| ||||||||||| |||||||||
Sbjct 602 TGGCTCGAGAAGGTTCATTTGAAGCGTATGTTTGTTACGGATGATGATTTGGCTCTTCTT 661
Query 630 GCTGACTCTTTTCCTGGGTTTAAAGAGCTTATC-TTGGTTTGTTGTGAAGGTTTTGGTAC 688
||||| || ||||||||||| |||||||||| | ||||| || |||||||||||||| ||
Sbjct 662 GCTGAGTCGTTTCCTGGGTTCAAAGAGCTTA-CTTTGGTCTGCTGTGAAGGTTTTGGGAC 720
Query 689 TAGTGGTATTGCTATTGTTACCAATAAGTGCAGAAAGCTGAAA-GTGCTTGATTTGATTG 747
||||||||||||||||||| | || || ||||| |||| ||| || ||||||||||| |
Sbjct 721 TAGTGGTATTGCTATTGTTGCTAACAAATGCAGGCAGCT-AAAGGTCCTTGATTTGATGG 779
Query 748 AGTCTGAGGTTACGGATGATGAAG-TGGATTGGATTTCTTGTTTCCCTGAGGATGTAACT 806
|||| || || || ||||||| || ||||||||||||||||||| ||||||| || ||||
Sbjct 780 AGTCAGAAGTCACAGATGATG-AGTTGGATTGGATTTCTTGTTTTCCTGAGGGTGAAACT 838
Query 807 -AGTCTTGAATCTTTAG-CTTTTGACTGTGTGGAAGCTCCTATCAATTTTAAGGCGCTT- 863
| ||| || ||||| | ||||||||||||| ||| | ||||||||||| ||||| ||
Sbjct 839 CA-TCTGGAGTCTTT-GTCTTTTGACTGTGTTGAATCCCCTATCAATTTCAAGGC-ATTG 895
Query 864 GAGG-GTCTTGTTGCTAGGTCACCGTTCTTGAAGAAACTTAG-GCTGAACAGGTTTGTGT 921
|||| | || || | ||||||||| ||||||||||||||||| | |||||||||||| |
Sbjct 896 GAGGAG-CTCGTGGTTAGGTCACCATTCTTGAAGAAACTTAGAAC-GAACAGGTTTGTTT 953
Query 922 CCCTTGTGGAGCTACATCGTCTGCTACTTGGAGCTCCACAGCTT-ACTAGTCTTGGGACA 980
|||||| ||||| ||||| || | || |||| || ||| || || |||||||||||
Sbjct 954 CCCTTGAAGAGCTGCATCGACTAATGGTTCGAGCGCCGCAG-TTAACGAGTCTTGGGACG 1012
Query 981 GGTTCATTTAG-CCATGATGAGGAACCTC-GGAGTGAGCAAGAACCAGATTATGCTGCTG 1038
|| |||||||| ||| || | | |||| || | || ||| |||| |||||||| ||||
Sbjct 1013 GGGTCATTTAGTCCA-GACAATGTGCCTCAGG-GAGAACAACAACCGGATTATGCAGCTG 1070
Query 1039 CATTTCGTGCTTGTAAATCTGTTGTTTGCCTGTCAGGATTTAGGGAGTTGATG-CCGGAG 1097
| ||||||||||||||||| | ||||| || |||||||| ||||| || | | |||||
Sbjct 1071 CTTTTCGTGCTTGTAAATCCATAGTTTGTCTCTCAGGATTCAGGGAATTTA-GACCGGAA 1129
Query 1098 TATCTTCC-AGCTATCT-TTCCGGTGTGCGCTAATCTCACTTC-CTTGAACTTCAGTTAT 1154
|| | ||| ||| |||| || | || || ||||||||||| || ||| ||||||||||||
Sbjct 1130 TA-CCTCCTAGCCATCTCTT-CAGTTTGTGCTAATCTCACCTCTCTT-AACTTCAGTTAT 1186
Query 1155 GCTAATATTTCTCCTGACATGTTTAAGCCCATCATACTCAATTGCCACAA-ACTCCAG-G 1212
||||| ||||||||| ||||| | |||||||||||| ||| || ||||| | ||| | |
Sbjct 1187 GCTAACATTTCTCCTCACATGCTCAAGCCCATCATAAGCAACTGTCACAATA-TCC-GAG 1244
Query 1213 TGTTCTGGGCTCTTGACTCAATATGTGATGAAGGACTACAGGCAGTTGCTGCAACTTGCA 1272
| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| || ||||
Sbjct 1245 TCTTCTGGGCTCTTGACTCGATACGTGATGAAGGACTACAGGCAGTGGCTGCCACATGCA 1304
Query 1273 AGGAACTCCGTGAACTCCGAATCTTCCCTTTTGATCCTCGGGAAGACAGTGAAGGTCCCG 1332
|||| |||||||| || || || ||||||||||||||||| ||||||||||||||||| |
Sbjct 1305 AGGAGCTCCGTGAGCTTCGGATTTTCCCTTTTGATCCTCGTGAAGACAGTGAAGGTCCTG 1364
Query 1333 TCTCTGAATTAGGCCTCCAAGCAATCTCTGAGGGTTGTAGGAAACTAGAATCTATTCTCT 1392
|||| | | |||||||||||||||| || ||||| ||||||||||| |||||||| || |
Sbjct 1365 TCTCGGGAGTAGGCCTCCAAGCAATTTCAGAGGGCTGTAGGAAACTGGAATCTATCCTGT 1424
Query 1393 ACTTTTGCCAGCGCATGACTAATGCTGCCGTGATAGCCATGTCAGAAAACTGTCCTG-AG 1451
||||||||||| ||||| |||| || |||| ||||||||| || ||||| || | ||
Sbjct 1425 ACTTTTGCCAGAATATGACCAATGGAGCTGTGACAGCCATGTCGGAGAACTG-CCCGCAG 1483
Query 1452 CTTACTGTGTTTAGGCTGTGCATAATGGGTCGACATAGGCCTGACCATGTGACAGGGAAG 1511
|||||||||||||| || |||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1484 CTTACTGTGTTTAGACTTTGCATAATGGGTCGCCATAGGCCTGACCACGTGACAGGAAAG 1543
Query 1512 CCTATGGACGAGGGTTTTGGTGCTATTGTTAAAAACTGCAAGAAGCTAACCCGACTTGCA 1571
|| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1544 CCAATGGACGATGGATTTGGTGCCATTGTTAAAAACTGCAAGAAGCTAACCCGACTTGCA 1603
Query 1572 GTGTCAGGCTTGCTGACAGATCAAGCTTTTAGGTATATGGGTGAGTATGGGAAATTGGTC 1631
|| ||||| || || |||||| |||||||||| ||||| || || |||||||||||| ||
Sbjct 1604 GTATCAGGGTTACTAACAGATGAAGCTTTTAGCTATATAGGAGAATATGGGAAATTGATC 1663
Query 1632 CGTACGCTTTCAGTAGCTTTTGCTGGGGATAGTGACATGGCTCTGAGACATGTCCTTGAA 1691
|||||||| || ||||| ||||||||| | ||||||| |||||||||| | || |||||
Sbjct 1664 CGTACGCTATCTGTAGCGTTTGCTGGGAACAGTGACAAGGCTCTGAGATACGTTCTTGAG 1723
Query 1692 GGTTGCCCTAGACTGCAAAAACTTGAGATAAGGGACAGTCCGTTTGGAGATGTTGCG-TT 1750
||||| |||| ||| ||||| |||||||| ||||||||||| ||||||||||||| | ||
Sbjct 1724 GGTTGTCCTAAACTACAAAAGCTTGAGATCAGGGACAGTCCCTTTGGAGATGTTG-GATT 1782
Query 1751 ACGCTCTGGTATGCATCGTTATTACAACATGAGGTTTGTTTGGATGTCGGCATGTAGCTT 1810
||||||||||||||||| |||| ||| ||||||||||||||| ||||| ||||| | |
Sbjct 1783 GCGCTCTGGTATGCATCGGTATTCCAATATGAGGTTTGTTTGGTTGTCGTCATGTCTCAT 1842
Query 1811 GTCAAAG-GGATGCTGCAAGGATATTGCAC--GCGTGATGCCGAATCTAGTTGTGGAAGT 1867
|| | ||| |||||| || | || | | || | |||| ||| |||| ||||||||
Sbjct 1843 ATCCC-GTGGAGGCTGCAGGGGTGTTTCTCATGC-TC-TGCCTAATGTAGTCGTGGAAGT 1899
Query 1868 AATTGG-GTC-A-GATGATGATGACGAC-A-A-T---A--GGG-ATTATGTTGAGACTTT 1915
| |||| | | | | |||||||||||| | | | | ||| ||||||||||||| ||
Sbjct 1900 ATTTGGAGCCGATGGTGATGATGACGAAGACACTGTCACTGGGGATTATGTTGAGACATT 1959
Query 1916 ATACATGTATCGGTCTCTTGATGGTCCAAGAAATGATGCACCAAAGTTCGTCACGATTTT 1975
||| ||||||| || |||||||| ||||| || ||||| |||||||| || || |||||
Sbjct 1960 GTACTTGTATCGATCCCTTGATGGCCCAAGGAAGGATGCTCCAAAGTTTGTAACAATTTT 2019
Query 1976 AT-AGAA 1981
|| ||||
Sbjct 2020 ATGAGAA 2026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114658044780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5