BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495055
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49990.1 | Symbols: | Xanthine/uracil permease family prote... 3005 0.0
> AT5G49990.1 | Symbols: | Xanthine/uracil permease family protein
| chr5:20337641-20341881 REVERSE LENGTH=1935
Length=1935
Score = 3005 bits (1627), Expect = 0.0
Identities = 1838/1937 (95%), Gaps = 25/1937 (1%)
Strand=Plus/Plus
Query 1 ATAACGAAACGTAGACAACTGTCCCCTCTGCTCcttcctcttc-a----c-t-gc-t--- 49
||| |||||||||||||||||||||||||||||||||||| || | | | | |
Sbjct 1 ATAGCGAAACGTAGACAACTGTCCCCTCTGCTCCTTCCTCATCAAGCCTCTTCTCTTCAC 60
Query 50 t-cttcttcttcaagtttactct-catattttcttctgctgcttcttcttcaCAAGAGGT 107
| |||||||||| |||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 61 TGCTTCTTCTTCTAGTTTACTCTCCA-ATTTTCTTCTGCTGCTGCTTCTTCACAAGAGGT 119
Query 108 TGAAG-ATGTCAGCTCCTAAATCGGGTGGTGATCCACTGCCACATCCGCCGAAAGAACAG 166
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 TGAAGAATGTCAGCTCCGAAATCGGGTGGTGATCCACTACCACATCCGCCGAAAGAACAG 179
Query 167 CTTCCCGATATCTCTTACTGCATTACAAGCCCTCCTCCATGGCCTGAGGCTGTTCTACTT 226
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 180 CTTCCAGATATCTCTTACTGCATTACAAGTCCTCCTCCATGGCCTGAGGCTGTTCTGCTT 239
Query 227 GGGTTTCAACACTACCTTGTGATGCTTGGAACAACAGTTCTGATTCCTTCGGCTCTTGTT 286
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 GGGTTTCAACACTACCTTGTGATGCTTGGAACAACAGTTCTGATTCCATCGGCTCTTGTT 299
Query 287 CCACAAATGGGAGGTGGAAATGAAGAGAAGGCGAAGCTGATCCAGACAATACTGTTTGTA 346
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 300 CCACAAATGGGAGGTAGAAATGAAGAGAAGGCAAAGCTGATCCAGACAATATTGTTTGTA 359
Query 347 GCTGGATTGAACACGTTGCTCCAGACAGTGTTTGGAACTAGATTACCTGCTGTCATTGGA 406
|||||||||||||| ||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 360 GCTGGATTGAACACACTGCTCCAAACTGTGTTTGGAACTAGATTACCTGCTGTTATTGGA 419
Query 407 GCATCTTATACATATGTCCCAGTTACAATCTCAATCATGCTTTCTGGAAGATTCAATGAC 466
||||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 420 GCATCTTATACATTTGTCCCGGTTACTATCTCAATCATGCTTTCTGGGAGATTCAATGAC 479
Query 467 GTTGCAGATCCAGTTGAACGATTTAAGAGGATAATTCGGGCAACCCAAGGTGCT-TTAAT 525
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 480 GTTGCAGATCCAGTTGAGCGATTTAAGAGGATAATTCGGGCAACCCAAGGTGCTCTT-AT 538
Query 526 TGTTGCTTCAACTCTTCAAATGATCCTTGGCTTCAGTGGCCTCTGGCGCAATGTTGTAAG 585
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 539 TGTTGCTTCAACTCTTCAAATTATCCTTGGCTTCAGTGGCCTTTGGCGTAATGTTGTAAG 598
Query 586 GTTCTTAAGTCCTCTATCTGCTGCTCCTCTGGTTGGATTAGTTGGTTATGGCCTGTACGA 645
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 GTTCTTAAGTCCACTATCTGCTGCTCCTTTGGTTGGATTAGTTGGTTATGGCCTGTACGA 658
Query 646 GTTGGGTTTTCCTGGTGTTGCTAAGTGTATCGAGATTGGACTGCCGGGGCTTATAATTCT 705
||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 659 GTTAGGTTTTCCCGGTGTTGCTAAGTGTATTGAGATTGGACTGCCTGGGCTTATTATTCT 718
Query 706 TATACTAATATCACAGTACATGCCCCATGTTATAAAAGGAGGAAAACATGTGTTTGCTCG 765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CATACTAATATCACAGTACATGCCCCATGTTATAAAAGGAGGAAAACATGTGTTTGCTCG 778
Query 766 CTTTGCTGTCATATTTTCTGTGGCGATAGTATGGCTTTTTGCTTTCTTTCTTACACTTGG 825
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 CTTTGCTGTCATATTTTCTGTGGCGATAGTATGGCTTTATGCTTTCTTTCTTACACTTGG 838
Query 826 TGGTGCCTATAATGGTGTTGGGACAAATACTCAAAGAAGCTGTCGGACTGATCGTGCTGG 885
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 839 TGGTGCCTATAATGGTGTTGGGACAGATACTCAAAGAAGCTGTCGGACTGATCGCGCTGG 898
Query 886 GCTTATAAGTGCTGCTCCATGGATAAGAGTTCCATGGCCATTCCAATGGGGCGCACCATT 945
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 899 GCTTATAAGTGCTGCTCCATGGATAAGAGTTCCGTGGCCTTTCCAATGGGGAGCACCATT 958
Query 946 GTTTGATGCTGGTGAAGCCTTTGCCATGATGATGGCTTCTTTTGTTGCTCTTGTTGAGTC 1005
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTTTGATGCTGGTGAAGCATTTGCCATGATGATGGCTTCTTTTGTTGCTCTTGTTGAGTC 1018
Query 1006 CACAGGTGCTTTTATTGCTGTCTCAAGATATGCTAGTGCTACAATGCCGCCACCTTCTGT 1065
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 CACAGGTGCTTTTATTGCCGTCTCAAGATATGCTAGTGCCACAATGCCGCCACCTTCTGT 1078
Query 1066 TATCAGCCGTGGGGTTGGTTGGCAGGGAGTTGCAATTTTAATCTCAGGGTTGTTCGGAAC 1125
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TATCAGCCGCGGGGTTGGTTGGCAGGGAGTTGCAATTTTAATCTCAGGGTTGTTCGGAAC 1138
Query 1126 TGGTATAGGGTCTTCAGTTTCTGTCGAGAATGCGGGTCTACTGGCACTAACAAAAATTGG 1185
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 TGGTATAGGGTCTTCAGTTTCTGTCGAGAATGCGGGTCTGCTGGCACTAACAAAAATTGG 1198
Query 1186 TAGCAGGAGAGTTGTCCAAATATCTGCAGGCTTTATGATATTCTTCTCAATTCTTGGGAA 1245
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TAGCAGGAGAGTTGTTCAAATATCTGCAGGCTTTATGATATTCTTCTCAATTCTTGGGAA 1258
Query 1246 GTTTGGGGCAGTGTTTGCATCAATACCTGCTCCTATCATTGCCGCCTTGTACTGTCTCTT 1305
||| |||||||| |||||||| |||||| |||||||||| || |||||||||||||||||
Sbjct 1259 GTTCGGGGCAGTATTTGCATCCATACCTTCTCCTATCATAGCTGCCTTGTACTGTCTCTT 1318
Query 1306 CTTTGCGTATGTTGGTGCTGGAGGACTGAGTTTGCTGCAATTTTGCAATCTGAATAGCTT 1365
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1319 CTTTGCGTATGTAGGTGCTGGAGGACTGAGTTTGCTGCAATTCTGCAACCTGAATAGCTT 1378
Query 1366 CAGGACATTGTTCATATTGGGCTTCTCAATCTTCCTAGGCCTATCAATTCCACAATATTT 1425
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CAGGACATTATTCATACTGGGCTTCTCAATCTTCCTAGGCCTATCAATTCCACAATATTT 1438
Query 1426 CAACGAGCACACAGCCATCAAAGGCTATGGTCCAGTTCATACCGGGGCAAGATGGTTCAA 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CAACGAGCACACAGCCATCAAAGGCTATGGTCCAGTTCATACCGGGGCAAGATGGTTCAA 1498
Query 1486 CGACATGGTCAATGTGCCCTTCTCGTCCAAGGCGTTTGTGGGAGGATGTGTGGCTTACTT 1545
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1499 CGACATGGTCAATGTGCCCTTCTCGTCCAAGGCCTTTGTGGGAGGATGTGTGGCTTACTT 1558
Query 1546 GTTGGACACGACGCTCCACAAGAAAGATGGTTCGATCAGGAAAGACCGAGGTAAACACTG 1605
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GTTGGACACGACGCTTCACAAGAAAGATGGTTCGATCAGGAAAGACCGAGGTAAACACTG 1618
Query 1606 GTGGGACAGATTCTGGACTTTCAAGAACGACCCGAGAACCGAAGAGTTCTATGCTCTTCC 1665
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1619 GTGGGACAGATTCTGGACTTTCAAGAACGACCCGAGAACAGAAGAGTTCTATGCTCTTCC 1678
Query 1666 TTTCAATCTCAACAAATACTTCCCTTCTGTCTGAAAAA---TCCTTACAAACTTTTATGT 1722
||||| ||||||||||| ||||||||||||||||||| ||||| |||||||| |||
Sbjct 1679 GTTCAACCTCAACAAATATTTCCCTTCTGTCTGAAAAAAAATCCTTCCAAACTTT-ATGG 1737
Query 1723 AATGCTATTTTGCTAGTGTTGTGTCCCTTAGGAGGACACAGCTTATCTAGCTAGGTTT-A 1781
|||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1738 AATGCTGTTTTGCTAGTTTTGTGTCCCTTAGGAGGACACACCTTATCTAGCTAGGTTTTA 1797
Query 1782 TGTGCATATTCGGTGAGGAGACTCTAAA-CGCAACTAGATATTATAACCCAAAGTGTTTA 1840
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 1798 TGTGCATATTCGGTGAGGAGACTATAAAACGCAACTAGATATTATAACCCAAAGTGTTAA 1857
Query 1841 GTAACATTTTAGAAACATTACTGTGATGTTTGTTTCTTATGTTTAGATGTTTTGCATTAA 1900
||||||||||||||| |||| |||||||||| || || ||||||||||||||||||||||
Sbjct 1858 GTAACATTTTAGAAATATTAATGTGATGTTTCTT-CT-ATGTTTAGATGTTTTGCATTAA 1915
Query 1901 AGATGATACTCGTTTTG 1917
|||||||||||||||||
Sbjct 1916 AGATGATACTCGTTTTG 1932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94929230595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5