BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495060
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50020.2 | Symbols: | DHHC-type zinc finger family protein ... 2202 0.0
AT4G24630.1 | Symbols: | DHHC-type zinc finger family protein ... 728 0.0
> AT5G50020.2 | Symbols: | DHHC-type zinc finger family protein
| chr5:20351160-20354317 FORWARD LENGTH=1578
Length=1578
Score = 2202 bits (1192), Expect = 0.0
Identities = 1397/1490 (94%), Gaps = 38/1490 (3%)
Strand=Plus/Plus
Query 124 AGAGAGTGTAGCGAGGAGTAGTCTCTGATCCGTTCGCTGATTCTAATGGC-GAGACGGGT 182
||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||
Sbjct 99 AGAGAGTGTAGCGAGGAGT-G--TCTGATCCGTTCGCTGATTCTAATGGCTG-GACGGGT 154
Query 183 CTTCGAAGCCTGGAAGGGAAGTAATAAGTTTTTATTTGGTGGGAGATTGATTTTTGGGCC 242
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 155 CTTCGAAGCCTGGAAGGGAAGTAATAAGTTTCTGTTTGGTGGGAGATTGATATTTGGGCC 214
Query 243 TGATGCTTGGTCTATTCCTTTTACCTTCCTGCTCATCATAACTCCAGTTTGTTTCTTTTC 302
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 215 AGATGCTTGGTCTATTCCTTTTACCTTCCTGCTCATCATAACTCCCGTTTGTTTCTTTTC 274
Query 303 TGTATTTGTTGCAACACATCTTCGCCGCGAGCTCTTACCAAACAATGCCGGACATGTGTT 362
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 275 TGTATTTGTTGCAACACATCTTCGCCGCGAGCTCTTACCAAACAATGCGGGACATGTGTT 334
Query 363 CTTAGTGGCAGGAGTCCTATTTACTGTCTTTGTACTGATCCTTCTCTTCCTCACTTCTGC 422
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CTTAGTGGCAGGAGTTCTATTTACTGTCTTTGTACTGATCCTTCTCTTCCTCACTTCTGC 394
Query 423 GCGGGATCCTGGAATCGTTCCAAGAAATTCACATCCGCCAGAGGAAGAACTATGCTATGA 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 395 GCGGGATCCTGGAATCGTTCCAAGAAATTCGCATCCGCCAGAGGAAGAACTATGCTATGA 454
Query 483 TACAACTGTATCAAGTGATGGAAGACAAACACCCACTGTTCAAATTCCTAGGACGAAGGA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TACAACTGTATCAAGTGATGGAAGACAAACACCCACTGTTCAAATTCCTAGGACGAAGGA 514
Query 543 AGTCATGGTTTATGGCGTTTCTGTTAGAGTTAAATATTGTGATACATGCATGCTTTATCG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AGTCATGGTTTATGGCGTTTCTGTTAGAGTTAAATATTGTGATACATGCATGCTTTATCG 574
Query 603 GCCTCCTCGTTGCTCCCATTGTTCCATTTGCAACAACTGTGTTGAGCGCTTTGATCATCA 662
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GCCTCCTCGATGCTCCCATTGTTCCATTTGCAACAACTGTGTTGAGCGCTTTGATCATCA 634
Query 663 -------T---T--GCC----C-TT---G-GAGAAACTATAGGTACTTCTTTATGTTTGT 701
| | ||| | || | ||||||||||||||||||||||||||||||
Sbjct 635 TTGCCCTTGGGTAGGCCAATGCATTGGAGTGAGAAACTATAGGTACTTCTTTATGTTTGT 694
Query 702 TTCTTCGGCAACTATTCTCTGCATCTACATTTTTTCGATGTCGGCATTATACATCAAGGT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TTCTTCGGCAACTATTCTCTGCATCTACATTTTTTCGATGTCGGCATTATACATCAAGGT 754
Query 762 TCTGATGGACAACCATCAAGGTACTGTGTGGAGGGCAATGCGAGAATCACCCTGGGCGGT 821
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TCTGATGGATAACCATCAAGGTACTGTGTGGAGGGCAATGCGAGAATCACCCTGGGCGGT 814
Query 822 TATGCTGATGATATATTGCTTTATTTCCCTTTGGTTTGTTGGAGGGCTTACTGGGTTTCA 881
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 815 TATGCTGATGATATATTGCTTTATTTCCCTGTGGTTTGTTGGAGGGCTTACTGGGTTTCA 874
Query 882 CTTGTACCTCATTAGCACAAACCAGACGACCTATGAGAATTTCCGGTACAGATCAGACAA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CTTGTACCTCATTAGCACAAACCAGACGACCTATGAGAATTTCCGGTACAGATCAGACAA 934
Query 942 CAGAATCAACGTTTATAACCGTGGGTGTTCAAACAATTTTCTTGAGACATTTTGCTCAAA 1001
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 935 TAGAATCAACGTTTATAACCGTGGGTGTTCAAACAATTTTTTTGAGACATTTTGCTCAAA 994
Query 1002 AGTTAAACCCTCGAGGAATGACTTCAGAGCGTTCATCAAAGAAGAATCTCCAAGGAATAT 1061
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 995 AGTTAAACCCTCAAGGAATGACTTCAGAGCGTTCATCAAAGAAGAACCTCCAAGGAATAT 1054
Query 1062 TACATTGGCTACCACATGGGAACGACCGGAAGAAGCAGAGGAAGAAAATAGGGAGGAACG 1121
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1055 TACATTGGCTACCACATGGGAACGACCAGAAGAAGCAGATGAAGAAAACAGGGAGGAACG 1114
Query 1122 GCGTCAGAAGGTGGAAGACGATCTAGACATCGATGAAGATGTTTTGAAACTCCAGCACCG 1181
||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1115 GCGCCAGAAGGTGGAAGACGATCTAGACATCGATGAAGATGTTATGAAACTGCAGCAGCG 1174
Query 1182 TTTACATGTTGAAGAGGGCAGCGATACAGGGCATCACAAGATCGATATTGACCAAATGAG 1241
|||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1175 TTTAAATGACGAAGAGGGCAGCGATACAGCGCATCACAAGATCGATATTGACCAAATGAG 1234
Query 1242 AGTTGGGTCTAATGAGAGAGCACCAACAATTCAATCAGAAGCCAGGCACGGAAACTGGGA 1301
| | ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 1235 AATCGGGTCTAATGAGAGAGCGCCAACAATTCGATCAGAAGCCAGGCATGGAAACTGGGG 1294
Query 1302 AACAAGACGTAATGTACAAGAGGACGATGTAATTGCTGGTTCTTCAGTAAGGGAAAGTAG 1361
| ||||| | |||| ||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1295 AGCAAGAAGCAATGCACAGGAGGAGGACGTAATTGCTGGTTCTTCAGTAAGAGAAAGTAG 1354
Query 1362 AAGCTATGCAGCTGCAGAGGAGGGACGGTGATTGA-TGAACTATGGTAGTAAAGAGGGTA 1420
|||||||||||||||||||||||||||||||| || ||||| ||||||||| | || ||
Sbjct 1355 AAGCTATGCAGCTGCAGAGGAGGGACGGTGAT-GAGTGAACGATGGTAGTA--G-GG-TA 1409
Query 1421 ATTCTTATGAAGCTTTTCACTTTCTTACTAAGTTTT-ATTGTTTTCAATTTTTCATTATT 1479
||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1410 ATTATTTTGAAGCTTTTT-CTTTCTTACTAAGTTTTTATTGTTTTCAATTTTTCATTATT 1468
Query 1480 TTACGGGTATGGTTCGATTTGGGAGTTGTGAACACTATCTGTGAATAAGTTTAGTGTAAG 1539
|| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1469 TTGTGGGTTTGGTTTGATTTGGGAGTTGTGAACACTATTTGTGAATAAGTTTAGTGTAAG 1528
Query 1540 C--G--TAGGGGTCAAATTAAGTTTTAACTATTCAACGTTTTGAATGTTT 1585
| | ||| |||| ||||||||| ||| || ||||| ||||||||||||
Sbjct 1529 CTTGGGTAGAGGTCGAATTAAGTTATAAGTAATCAACTTTTTGAATGTTT 1578
> AT4G24630.1 | Symbols: | DHHC-type zinc finger family protein
| chr4:12714624-12717111 FORWARD LENGTH=1519
Length=1519
Score = 728 bits (394), Expect = 0.0
Identities = 820/1017 (81%), Gaps = 63/1017 (6%)
Strand=Plus/Plus
Query 177 ACGGGTCTTCGAAGCCTGGAAGGGAAGTAATAAGTTTTTATTTGGTGGGAGATTGATTTT 236
|||||| ||| ||| |||||| ||||| ||||| || | | |||||||||||||| ||
Sbjct 304 ACGGGTATTCCAAGTCTGGAAAGGAAGCAATAAATTCATCCTGGGTGGGAGATTGATATT 363
Query 237 TGGGCCTGATGCTTGGTCTA-TTCCTTTTACCTTCCTGCTCATCATAACTCCAGTTTG-T 294
||| || |||||| |||| | | ||| ||||||| || | |||||| ||| | ||| |
Sbjct 364 TGGACCAGATGCTAGGTC-ACTGCCTCTTACCTTGCTATTGATCATAGTTCC-GGTTGTT 421
Query 295 TTCTTTTCTGTATTTGTTGCAACACATCTTCGCCGCGAGCTCT-TACCAAACAATGCCGG 353
|| || | ||||||||| |||| || ||||||| ||| ||| | || ||||||| ||
Sbjct 422 TTGTTCTGTGTATTTGTAGCAAGGCACCTTCGCCATGAGTTCTCT-CCCTACAATGCGGG 480
Query 354 ACATGTGT-TCTTAGTGGCAGGAGTCCTATTT-ACTGTCTT-TGTACTGATCCTTCTCTT 410
| ||| | || | |||| || | | || ||| ||| | || |||| ||||||| |||||
Sbjct 481 ATATG-CTATCATGGTGGTAGCAATTCT-TTTCACTAT-TTATGTATTGATCCTCCTCTT 537
Query 411 CCTCACTTCTGCGCGGGATCCTGGAATCGTTCCAAGAAATTCACATCCGCCAGAGGAAGA 470
| |||| ||||| || |||||||| || ||||| ||||||| ||||| |||||||||||
Sbjct 538 CTTCACATCTGCACGAGATCCTGGTATTGTTCCTCGAAATTCGCATCCACCAGAGGAAGA 597
Query 471 ACTATGCTATGATACAACTGTATCAAG-TGATGGAAGACAAACACCCACTGTTCAAATTC 529
||| | ||||| ||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct 598 CCTACGTTATGAGACAACTGTATC-AGCTGATGGAAGACAAACACCGAGTGTTCAAATTC 656
Query 530 CTAGGACGAAGGAAGTCATGGTTTATGGCGTTTCTGTTAGAGTTAAATATTGTGATACAT 589
| |||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 657 CCAGGACGAAAGAAGTCATTGTTAATGGCGTTTCTGTTAGAGTGAAATACTGTGATACAT 716
Query 590 GCATGCTTTATC-GGCCTCCTCGTTGCTCCCATTGTTCCATTTGCAACAACTGTGTTGAG 648
|||||||||| | |||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 717 GCATGCTTTA-CAGGCCTCCTCGCTGCTCTCATTGCTCCATATGCAACAACTGTGTTGAG 775
Query 649 CGCTTTGATCATCATTGCCC-T---TGG-A----G-A----A---A----CTATAGGTAC 687
|||||||||||||||||||| | ||| | | | | | |||||||||
Sbjct 776 CGCTTTGATCATCATTGCCCATGGGTGGGACAATGCATTGGACTGAGAAACTATAGGTAT 835
Query 688 TTCTTTATGTTTGTTTCTTCGGCAACTA-TTCTCTGCATCTACATTTTTTCGATGTCGGC 746
||||||||||||||||||||| |||| | ||||||||||||| ||||| |||||||||||
Sbjct 836 TTCTTTATGTTTGTTTCTTCGTCAAC-ACTTCTCTGCATCTATATTTTCTCGATGTCGGC 894
Query 747 ATTATACATCAAGGTTCTGATGGA-CAACCATCAAGGTACTGTGTGGAGGGCAATGCGAG 805
||||||||||| |||||||||| || | | |||| |||||||||||||||||| ||
Sbjct 895 GGTATACATCAAGATTCTGATGGATCATCAA-CAAGCAACTGTGTGGAGGGCAATGAAAG 953
Query 806 AATCACCCTGGGCGGTTATGCTGATGATATATTGCTTTATTTCCCTTTGGTTTGTTGGAG 865
||||||| ||||| ||| || |||||||||||||||||||| |||| |||||||||||||
Sbjct 954 AATCACCTTGGGCTGTTGTGTTGATGATATATTGCTTTATTGCCCTGTGGTTTGTTGGAG 1013
Query 866 GGCTTACTGGGTTTCACTTGTACCTCATTAGCACAAACCAGACGACCTATGAGAATTTCC 925
|||| || | |||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 1014 GGCTCACAGCGTTTCACTTGTACCTCATAAGTACAAACCAGACAACCTATGAGAAACTCC 1073
Query 926 GGTACAGATCAG-ACA-A-CAGAATCAACGTTTATAACCGTGGGTGTTCAAACAATTTTC 982
||||||| ||| ||| | ||| | || || ||||||||||| ||| |||||||||| |
Sbjct 1074 GGTACAGGTCATCACACAGCAGGAGCATTGTCTATAACCGTGGCTGTCCAAACAATTTCC 1133
Query 983 TTGAGACATTTT-GCTCAAAAGTTAAACCCTCGAGGAATGACTTCAGAGCGTTCATCAAA 1041
| || | |||| ||||||| || || ||||||||||| |||| ||||| |||||| ||
Sbjct 1134 TGGA-AGTTTTTTGCTCAAAGGTGAAGCCCTCGAGGAACAACTTTAGAGCCTTCATCGAA 1192
Query 1042 GAAGAATCTCCAAGGAAT-ATTACAT-TGGCTA-C-C-AC-ATGGGAA-CGACCGGAAGA 1094
|||||| | ||||| | | ||||| | || ||| | | || | ||||| | | || ||
Sbjct 1193 GAAGAACCCCCAAG-AGTTATTAC-TCTGCCTAGCACCACCA-GGGAATC-AG-GG--GA 1245
Query 1095 AGCAGAGGAAGAAAATAGGGAGGAACGGCGTCAGAAGGTGGAAGACGATCTAGACAT 1151
|||||| || |||||| | || ||||| ||||| ||||||||||||||||||||
Sbjct 1246 AGCAGAAGACGAAAAT-GTGACC--CGGCGACAGAAAGTGGAAGACGATCTAGACAT 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5