BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495062 Length=536 Score E Sequences producing significant alignments: (Bits) Value AT5G50040.1 | Symbols: | Plant invertase/pectin methylesterase... 686 0.0 > AT5G50040.1 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:20357126-20358107 FORWARD LENGTH=528 Length=528 Score = 686 bits (371), Expect = 0.0 Identities = 483/536 (90%), Gaps = 12/536 (2%) Strand=Plus/Plus Query 1 ATGGCTTCTTCCTCCTACTATTTTGGCCTAGTTTCTCTTGCAGTTCTGTCACCATTTCTC 60 ||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1 ATGGCTTCTCCCTCCAACTATTTTTTCCTAGTTTCTCTTGCAGTTCTGTTACCATTTCTC 60 Query 61 TTAATCTCTGCTTCGGCCACAAATTACATCGACGCCATATGTCAACGTGTTACCGACAAA 120 |||||| |||||||||||||| |||||| ||||||||||||||| |||||||||||||| Sbjct 61 ATAATCTTTGCTTCGGCCACAACTTACATTGACGCCATATGTCAAAGTGTTACCGACAAA 120 Query 121 GCCTTCTGTGCCAAAACTTTGAACGCATACCCTGCCGCATACCCTGCCGCTGCTTCTGCC 180 |||||||| |||||||||||||||||||||||||||| | | | || |||||| Sbjct 121 GCCTTCTGCGCCAAAACTTTGAACGCATACCCTGCCG------C-G--G--GC-TCTGCC 168 Query 181 ACCAGCCAGTTTCAAGCAGCTGTGGCCACCCTCAACCTAGCCATATCTTATGCCGATAAG 240 ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| Sbjct 169 ACCAGCCAGTTTCAAGCAGCTACGGCCACGCTCAACCTAGCCATTTCTTATGCCGATAAG 228 Query 241 TGTGCGGGTTTCAGTGGAAATGCGGCAAAGGAAAATCCAAACTTGAAGACGCAGTTTGCG 300 | ||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 229 TCTGCGGGTTTCACCGGAAATGCGGCAAAGGAGAATCCAACCTTGAAGACGCAATTTGCA 288 Query 301 GCTAGCCAAGATGCCTTTGTGACCATTAGCAAGTCTGTCAAGAGCGCTGCCTCGGAACTC 360 || || |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| Sbjct 289 GCGAGTCAAGATGCCTTTGTGACCATTAGCAAGTCTCTCAAGAGTGCTGCTTCGGAACTC 348 Query 361 AAGGTATCGCCAGACACTGCCAACTATGACGTCATGGTTTGTAGTGATAGCATAGCGGTG 420 ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | Sbjct 349 AAGATATCGCCAGACACTGCCAACTATGATGTCATGGTTTGTAGTGACAGCATAGCGACG 408 Query 421 GTGAAGAATTCGGTAGGGAAAAATTCAGACAATGCGTCGAAGACTGTTATGACGATGACA 480 |||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||||||||| Sbjct 409 GTGAAGAATTTGGTAGAGAAAAATACAGACAATTCGTCAAAGACTGTTATGACGATGACA 468 Query 481 TTGATGATGGAGAAGCTTCTTGCTATCGCGGTTGGAGCCACTGTCGCTGTTGGCGG 536 |||||||||||||| |||||| | ||||| |||||||||||||||||||||||||| Sbjct 469 TTGATGATGGAGAAACTTCTTACAATCGCCGTTGGAGCCACTGTCGCTGTTGGCGG 524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25669649117 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5