BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495062

Length=536
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50040.1 | Symbols:  | Plant invertase/pectin methylesterase...   686    0.0  


> AT5G50040.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:20357126-20358107 FORWARD 
LENGTH=528
Length=528

 Score =  686 bits (371),  Expect = 0.0
 Identities = 483/536 (90%), Gaps = 12/536 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTTCTTCCTCCTACTATTTTGGCCTAGTTTCTCTTGCAGTTCTGTCACCATTTCTC  60
            ||||||||| ||||| ||||||||  ||||||||||||||||||||||| ||||||||||
Sbjct  1    ATGGCTTCTCCCTCCAACTATTTTTTCCTAGTTTCTCTTGCAGTTCTGTTACCATTTCTC  60

Query  61   TTAATCTCTGCTTCGGCCACAAATTACATCGACGCCATATGTCAACGTGTTACCGACAAA  120
             |||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct  61   ATAATCTTTGCTTCGGCCACAACTTACATTGACGCCATATGTCAAAGTGTTACCGACAAA  120

Query  121  GCCTTCTGTGCCAAAACTTTGAACGCATACCCTGCCGCATACCCTGCCGCTGCTTCTGCC  180
            |||||||| ||||||||||||||||||||||||||||      | |  |  || ||||||
Sbjct  121  GCCTTCTGCGCCAAAACTTTGAACGCATACCCTGCCG------C-G--G--GC-TCTGCC  168

Query  181  ACCAGCCAGTTTCAAGCAGCTGTGGCCACCCTCAACCTAGCCATATCTTATGCCGATAAG  240
            |||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||
Sbjct  169  ACCAGCCAGTTTCAAGCAGCTACGGCCACGCTCAACCTAGCCATTTCTTATGCCGATAAG  228

Query  241  TGTGCGGGTTTCAGTGGAAATGCGGCAAAGGAAAATCCAAACTTGAAGACGCAGTTTGCG  300
            | |||||||||||  ||||||||||||||||| ||||||| |||||||||||| ||||| 
Sbjct  229  TCTGCGGGTTTCACCGGAAATGCGGCAAAGGAGAATCCAACCTTGAAGACGCAATTTGCA  288

Query  301  GCTAGCCAAGATGCCTTTGTGACCATTAGCAAGTCTGTCAAGAGCGCTGCCTCGGAACTC  360
            || || |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct  289  GCGAGTCAAGATGCCTTTGTGACCATTAGCAAGTCTCTCAAGAGTGCTGCTTCGGAACTC  348

Query  361  AAGGTATCGCCAGACACTGCCAACTATGACGTCATGGTTTGTAGTGATAGCATAGCGGTG  420
            ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||  |
Sbjct  349  AAGATATCGCCAGACACTGCCAACTATGATGTCATGGTTTGTAGTGACAGCATAGCGACG  408

Query  421  GTGAAGAATTCGGTAGGGAAAAATTCAGACAATGCGTCGAAGACTGTTATGACGATGACA  480
            |||||||||| ||||| ||||||| |||||||| |||| |||||||||||||||||||||
Sbjct  409  GTGAAGAATTTGGTAGAGAAAAATACAGACAATTCGTCAAAGACTGTTATGACGATGACA  468

Query  481  TTGATGATGGAGAAGCTTCTTGCTATCGCGGTTGGAGCCACTGTCGCTGTTGGCGG  536
            |||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||
Sbjct  469  TTGATGATGGAGAAACTTCTTACAATCGCCGTTGGAGCCACTGTCGCTGTTGGCGG  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25669649117


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5