BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495065
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50080.1 | Symbols: ERF110 | ethylene response factor 110 |... 1242 0.0
> AT5G50080.1 | Symbols: ERF110 | ethylene response factor 110
| chr5:20365722-20366835 FORWARD LENGTH=889
Length=889
Score = 1242 bits (672), Expect = 0.0
Identities = 808/875 (92%), Gaps = 3/875 (0%)
Strand=Plus/Plus
Query 1 GACAACTTTGTTTCCATATATAAATTAGTCAAGCCTCTATAGATAGACTACATTCGGAAA 60
||||||||| |||||||||||||| |||||||||||||| ||| |||| |||||| | ||
Sbjct 1 GACAACTTTATTTCCATATATAAACTAGTCAAGCCTCTAAAGAGAGACCACATTCCG-AA 59
Query 61 AAATACTAGTTTATTGGTGTTATTTGTCGCTCCTCAAGGTGGCAAACCAAGGAGAACAAG 120
|| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 60 AAGTACTTGTTTATTGGTGTTATTCATCGCTGCTCAAGGTGGCAAACCAAGGAGAACAAG 119
Query 121 AAGAGTCCAGGGCCAATGAGCCTGAGGGTATCGAATCAGTGGTTGATGACGTCTACAATT 180
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||
Sbjct 120 AAGAGTCCAGGGCCAATGAGCCTGAGGGTATCAAATCAGTGATTGATGACATCTACATTT 179
Query 181 TTGAAGACGACCCTGTTGTTGATAGGTTCAATAGGTTCGGCACGGAGATGTCTGCCATGG 240
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 TTGAAGACGACCCTGTGGTTGATAGGTTCAATAGGTTTGGCACGGAGATGTCTGCCATGG 239
Query 241 TCTCGGCTTTGACACAGGTTGTTTCTGCTCGCTCTCAGACTGAGGCCGAAGGGGCTCACT 300
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 240 TCTCGGCCTTGACACAGGTGGTTTCTGCTCGCTCTCAGACTGAGGCTGAAGGTGCTCACT 299
Query 301 CTTCTTCCTCTTCGGCTGGACAGAAGAGAGGTTGGCTTGGAATCGATTCTG-TGCCTATT 359
|||||||||||||||||||||| || ||||| ||||||||||||||||||| | ||||||
Sbjct 300 CTTCTTCCTCTTCGGCTGGACATAAAAGAGGATGGCTTGGAATCGATTCTGCT-CCTATT 358
Query 360 CCCTCCCCATTTGCTCGAGTAGACTCTTCACTTAGTCCGATCGAAGAATCAACAAGCAAG 419
||||| |||||||||| ||||||||||||| || ||||||||||||||| | ||||||
Sbjct 359 CCCTCATCATTTGCTCGTGTAGACTCTTCACATAATCCGATCGAAGAATCCATGAGCAAG 418
Query 420 GCACTACCAGAGGAAGCAAGGGAGAAAAGAAGGAGATACAGGGGAGTAAGGCAAAGACCA 479
||| | |||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||
Sbjct 419 GCATTTCCAGAGGAAGCAAGGGAGAAAAAAAGGAGGTACAGAGGAGTAAGGCAGAGACCA 478
Query 480 TGGGGCAAATGGGCGGCTGAGATACGCGATCCACATAGAGCCGCTAGAGTTTGGCTCGGG 539
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 479 TGGGGCAAATGGGCAGCTGAGATACGTGATCCACATAGAGCCGCTAGGGTTTGGCTCGGG 538
Query 540 ACGTTTGATACAGCGGAAGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCAGGTTCCGT 599
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 ACGTTTGATACAGCGGAGGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCCGGTTCCGT 598
Query 600 GGAAATAAAGCAAAGCTTAATTTCCCAGAGGATGTAAGGAttcttcctcctcctcctcct 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 GGAAATAAAGCAAAGCTAAATTTCCCAGAGGATGTAAGGATTCTTCCTCCTCCCCCTCCT 658
Query 660 cttcttcctccACCAGCTGACACGGCGGCGAATAAAGCAGAAGAGGATCTGATAAATTAT 719
||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 CTTCTTCGTTCACCAGCTGACACGGTGGCGAATAAAGCAGAAGAGGATCTGATAAATTAT 718
Query 720 TGGAGTTATTCAAAGTTGTTGCAAAGTTCAGACCAACGGTTAATCCCCGAGCGAGGACAA 779
||||||||| ||||||||||||||||||||| |||||||| | | | |||||||||||||
Sbjct 719 TGGAGTTATACAAAGTTGTTGCAAAGTTCAGGCCAACGGTCATTTCTCGAGCGAGGACAA 778
Query 780 GAAGAGAGTACCAACATACTAGAACATTTACCAATGGAACAACCTTTGCCTCCTTCAAGT 839
|||||||||| |||||| | ||||||| |||||||||||||||| ||||||||||||||
Sbjct 779 GAAGAGAGTAGTAACATATTTGAACATTCACCAATGGAACAACCTCTGCCTCCTTCAAGT 838
Query 840 TCTGGTCCAAGTTCCTCTGATTTTTGTGGACCTTC 874
|||||||||||||||||| ||||| || ||||||
Sbjct 839 TCTGGTCCAAGTTCCTCTAATTTTCCTGCACCTTC 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42648790803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5