BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495067
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1875 0.0
AT5G50111.1 | Symbols: | Pseudogene of AT5G50120; transducin f... 427 1e-118
> AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20382615-20383874 REVERSE LENGTH=1260
Length=1260
Score = 1875 bits (1015), Expect = 0.0
Identities = 1179/1257 (94%), Gaps = 16/1257 (1%)
Strand=Plus/Plus
Query 1 TTTTTCTCTTTATATTACCTCTCC-AAGGTTTGCTCATTGG-TTCAATCTTCCTTCATAA 58
|||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 13 TTTTTCTCTTTATATTACATCTCCAAAGGTTTGCTCATTGGTTTCAATCTTCCTTCATAA 72
Query 59 G-AAACAATGATACGATTTCAAGAATCCGAAGAAGAGCCTGATTTTTCTCAAGAAGATCA 117
| ||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 73 GCAAA-AATGATACAATTTCAAGAATCCGAAGAAGAACCAGATTTTTCTCAAGAAGATCA 131
Query 118 TCTAACATCTTCTTGTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 177
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 TCTAACATCTTCTTCTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 191
Query 178 ATCCTACATTTCATCTCTAACCCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATCCTACATTTCATCTCTAACTCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 251
Query 238 AGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCGGAAGCATCAAGCAACGG 297
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 252 GGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCCGAAGCATCAAGCAACGG 311
Query 298 CGATGTAATAACAGGAGAGAGAGGAGGCGGAGGAGCAGTGAAATCTTTGGTAATAC-TGG 356
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 312 CGATGTAATAACAGGGGAGAGAGGAGGTGGAGGAGCAGTGAAATCTTTGGTAAT-CTTGG 370
Query 357 CTGATAAACTATTCACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 416
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGATAAACTCTTTACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 430
Query 417 TTGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATGTAGCGACGATGCCAACTATTA 476
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 431 TCGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATTTAGCGACGATGCCAACGATTA 490
Query 477 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGGACCAAGTTGAAATAAGGAGGCATAAGA 536
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 491 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGAACCAAGTTGAAATAAGGAGGCATAAGA 550
Query 537 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 610
Query 597 CGCTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGTACTTCCGATTTTA 656
| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 611 CACTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGAACCACCGATTTTA 670
Query 657 AATGCCTAGAGTCATTCACAAACGCCCATGATGATGCAATCAATGCGGTTGCATTATCCG 716
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 671 AATGCCTAGAGTCATTCACAAACGCCCACGATGATGCAATCAATGCGGTTGCATTATCCG 730
Query 717 AAAACGGAGATATATACACAGGATCTTCTGACCAGAGAATCAAAGTATGGAGGAAAAACA 776
|||| || |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 731 AAAATGGTGATATATATACAGGATCTTCTGACCAAAGAATCAAAGTGTGGAGGAAGAACA 790
Query 777 TCAATgaagagaatgagaagaagaagaagaagaagaaACATTCTTTGGTTGCAATATTGT 836
||||||||||||||| || | |||||||| | |||||||||||| |||||||||||||
Sbjct 791 TCAATGAAGAGAATGT-AA-A-GAAGAAGA-G--GAAACATTCTTTAGTTGCAATATTGT 844
Query 837 CGGAACATAATTCGGGTATCAACGCACTGGCATTGAGCGGTAATAACGGCACTCTTTTGC 896
| ||||||||||| ||||| |||||| ||||||||||||||| ||| ||| |||||||||
Sbjct 845 CAGAACATAATTCAGGTATTAACGCATTGGCATTGAGCGGTACTAATGGCTCTCTTTTGC 904
Query 897 ATTCGGGTGGATCTGACGGATCAATATTGGTGTGGGAAAGAGAAGAAGGTGGAGACATTG 956
|||| ||||||||||| ||||| ||||||||||||||| | || || |||||||||||||
Sbjct 905 ATTCCGGTGGATCTGATGGATCGATATTGGTGTGGGAACGTGACGATGGTGGAGACATTG 964
Query 957 TACTTGTTGGAATGCT-ACGAGGTCACACAGAGTCTGTTCTATGCCTTGCGGTTGTGTCG 1015
|| ||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||
Sbjct 965 TAGTTGTTGGAATGCTTA-GAGGTCACACAGAGTCTGTTCTATGCCTCGCGGTTGTTTCG 1023
Query 1016 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGCTGTGGAAATGTTCAGGGACG 1075
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1024 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGTTGTGGAAATGTTCAGCCAAG 1083
Query 1076 GATTATTCGTGCTTGGCTATGTTGGAGGGACATATAGGACCGGTTAAGTGCTTGACCGGG 1135
|||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1084 GATTATTCATGCTTGGCTATGTTAGAGGGACATTTAGGACCGGTTAAGTGCTTGACAGGG 1143
Query 1136 GCAATTCGTCATTC-CGGTAAACCATCTGAGGCTTCTTATCATATTTATAGTGGAGGACT 1194
||| ||||| |||| || |||| || |||||||||||||||||||||||||||||||||
Sbjct 1144 GCATTTCGTGATTCGCG-TAAAGCAGATGAGGCTTCTTATCATATTTATAGTGGAGGACT 1202
Query 1195 TGACTCTCAAGTTAAGGTTTGGCAGATTTTGGTGCCGACCTAATAAAAGAGTTACTT 1251
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1203 AGACTCTCAAGTTAAGGTTTGGCAGGTTTTGGTGCCGGCCTAATAAAAGAGTTACTT 1259
> AT5G50111.1 | Symbols: | Pseudogene of AT5G50120; transducin
family protein / WD-40 repeat family protein | chr5:20376311-20376942
REVERSE LENGTH=632
Length=632
Score = 427 bits (231), Expect = 1e-118
Identities = 523/655 (80%), Gaps = 56/655 (9%)
Strand=Plus/Plus
Query 155 GCCACTCTTGTAT-GTCACACAGCATCCTACATTTCATCTCTAACCCTTGCAGGAAAG-A 212
||||||||||| | |||| | | |||||||||||||||||||||||||||| || | |
Sbjct 4 GCCACTCTTGT-TGGTCATTTATCCTCCTACATTTCATCTCTAACCCTTGCAG-AATGGA 61
Query 213 GACTTTACACAGGCTCCAACGACGGAGTTGTT-AGATTATGGAATGCAAACACGTTGGAA 271
||||||||||||||||||||||| ||||| || ||||| |||||||||| |||||| |||
Sbjct 62 GACTTTACACAGGCTCCAACGACAGAGTT-TTCAGATTGTGGAATGCAAGCACGTTTGAA 120
Query 272 ACATTAGCGGAAGCATCAAGCAACGGCGATGTAATAACAGGAGAGAG-AGGAGGCGGAG- 329
||| || | |||| |||||||| ||||| |||||| |||||| || |||||| |||
Sbjct 121 ACACTATCAGAAGTATCAAGCAGTGGCGACATAATAAAAGGAGA-AGGAGGAGGAGGAAC 179
Query 330 -GA-GCAGTGAAATCTTTGGTAATACT-GGCTGATAAACTATTCACAGCACACCAAGATC 386
|| ||||||||||||| |||||| || |||||| || || ||| |||| ||||||||||
Sbjct 180 AGAAGCAGTGAAATCTTGGGTAAT-CTAGGCTGAGAAGCTCTTCCCAGCGCACCAAGATC 238
Query 387 ATAAGATACGTGTGTGGAAGATAAACGACGT--T-GTTGAAGAAGACGTGGGTGGTAAAA 443
| |||||| ||||||||||||| || ||||| | ||||||||| | | |||||||| ||
Sbjct 239 AAAAGATATGTGTGTGGAAGATCAATGACGTCGTCGTTGAAGAAAAAGCGGGTGGTATAA 298
Query 444 AGTACATGCATGTAGCGACGATGCCAACTATTAGCGATCGTTTTGCAAAGTGTTTGATGC 503
||||||||||| | || | |||||||| ||||| || ||||| ||||||||||| ||||
Sbjct 299 AGTACATGCATTTGGCTATGATGCCAAAGATTAGTGACCGTTTAGCAAAGTGTTTAATGC 358
Query 504 C--AAAGGACCAAGTTGAAATAAGGAGGCATAAGAAAGCTTCATGGGTTCACCATGTAGA 561
| ||| ||||||| || ||| ||||||| | |||||||||||||
Sbjct 359 CTTAAAA-ACCAAGT-------------CA-AAG---GCTTCATTG-TTCACCATGTAGA 399
Query 562 CGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAACGCTACTCTACTCTGTCTCATGGGA 621
||||||||| |||| |||||||||||| |||||||| || ||||| ||||||||| | |
Sbjct 400 CGCGGTTTCAGGTTAAGCCTTATCAAGTGATGGAACACTCCTCTATTCTGTCTCACAGAA 459
Query 622 CAGGACG--C----TT----AAAATCTGGCGTACTTCCGATTTTAAATGCCTAGAGTC-A 670
| ||| | | || ||||| | ||| ||| || |||||||||||||| |||| |
Sbjct 460 CTGGATGTTCAAAATTGTTCAAAATATAGCGAACTACCCATTTTAAATGCCTATAGTCCA 519
Query 671 TTCACAAACGCCCATGATGATGCAATCAATGCGGTTGCATTATCCGAAAACGG-AGATAT 729
| ||||||| |||| ||||||| |||||||||||||| | ||||| || || | |
Sbjct 520 T-CACAAACACCCACGATGATGTAATCAATGCGGTTGAAGTATCC-AATT-GGTA-AGC- 574
Query 730 ATACACAGGATCTTCTGACCAGAGAATCAAAGTATGGAGGAAAAACAT-CAATga 783
||||| |||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 575 ATACATGGGATCTTCTGACCAGAGAATCAAAGTATCGAGGAAAAA-ATTCAATGA 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5