BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495067 Length=1251 Score E Sequences producing significant alignments: (Bits) Value AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1875 0.0 AT5G50111.1 | Symbols: | Pseudogene of AT5G50120; transducin f... 427 1e-118 > AT5G50120.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20382615-20383874 REVERSE LENGTH=1260 Length=1260 Score = 1875 bits (1015), Expect = 0.0 Identities = 1179/1257 (94%), Gaps = 16/1257 (1%) Strand=Plus/Plus Query 1 TTTTTCTCTTTATATTACCTCTCC-AAGGTTTGCTCATTGG-TTCAATCTTCCTTCATAA 58 |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| Sbjct 13 TTTTTCTCTTTATATTACATCTCCAAAGGTTTGCTCATTGGTTTCAATCTTCCTTCATAA 72 Query 59 G-AAACAATGATACGATTTCAAGAATCCGAAGAAGAGCCTGATTTTTCTCAAGAAGATCA 117 | ||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||| Sbjct 73 GCAAA-AATGATACAATTTCAAGAATCCGAAGAAGAACCAGATTTTTCTCAAGAAGATCA 131 Query 118 TCTAACATCTTCTTGTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 177 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 TCTAACATCTTCTTCTCAACCACTTCATCAATGTATTGCCACTCTTGTATGTCACACAGC 191 Query 178 ATCCTACATTTCATCTCTAACCCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 237 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 192 ATCCTACATTTCATCTCTAACTCTTGCAGGAAAGAGACTTTACACAGGCTCCAACGACGG 251 Query 238 AGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCGGAAGCATCAAGCAACGG 297 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 252 GGTTGTTAGATTATGGAATGCAAACACGTTGGAAACATTAGCCGAAGCATCAAGCAACGG 311 Query 298 CGATGTAATAACAGGAGAGAGAGGAGGCGGAGGAGCAGTGAAATCTTTGGTAATAC-TGG 356 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 312 CGATGTAATAACAGGGGAGAGAGGAGGTGGAGGAGCAGTGAAATCTTTGGTAAT-CTTGG 370 Query 357 CTGATAAACTATTCACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 416 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 CTGATAAACTCTTTACAGCACACCAAGATCATAAGATACGTGTGTGGAAGATAAACGACG 430 Query 417 TTGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATGTAGCGACGATGCCAACTATTA 476 | |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 431 TCGTTGAAGAAGACGTGGGTGGTAAAAAGTACATGCATTTAGCGACGATGCCAACGATTA 490 Query 477 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGGACCAAGTTGAAATAAGGAGGCATAAGA 536 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 491 GCGATCGTTTTGCAAAGTGTTTGATGCCAAAGAACCAAGTTGAAATAAGGAGGCATAAGA 550 Query 537 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 551 AAGCTTCATGGGTTCACCATGTAGACGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAA 610 Query 597 CGCTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGTACTTCCGATTTTA 656 | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 611 CACTACTCTACTCTGTCTCATGGGACAGGACGCTTAAAATCTGGCGAACCACCGATTTTA 670 Query 657 AATGCCTAGAGTCATTCACAAACGCCCATGATGATGCAATCAATGCGGTTGCATTATCCG 716 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 671 AATGCCTAGAGTCATTCACAAACGCCCACGATGATGCAATCAATGCGGTTGCATTATCCG 730 Query 717 AAAACGGAGATATATACACAGGATCTTCTGACCAGAGAATCAAAGTATGGAGGAAAAACA 776 |||| || |||||||| ||||||||||||||||| ||||||||||| |||||||| |||| Sbjct 731 AAAATGGTGATATATATACAGGATCTTCTGACCAAAGAATCAAAGTGTGGAGGAAGAACA 790 Query 777 TCAATgaagagaatgagaagaagaagaagaagaagaaACATTCTTTGGTTGCAATATTGT 836 ||||||||||||||| || | |||||||| | |||||||||||| ||||||||||||| Sbjct 791 TCAATGAAGAGAATGT-AA-A-GAAGAAGA-G--GAAACATTCTTTAGTTGCAATATTGT 844 Query 837 CGGAACATAATTCGGGTATCAACGCACTGGCATTGAGCGGTAATAACGGCACTCTTTTGC 896 | ||||||||||| ||||| |||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 845 CAGAACATAATTCAGGTATTAACGCATTGGCATTGAGCGGTACTAATGGCTCTCTTTTGC 904 Query 897 ATTCGGGTGGATCTGACGGATCAATATTGGTGTGGGAAAGAGAAGAAGGTGGAGACATTG 956 |||| ||||||||||| ||||| ||||||||||||||| | || || ||||||||||||| Sbjct 905 ATTCCGGTGGATCTGATGGATCGATATTGGTGTGGGAACGTGACGATGGTGGAGACATTG 964 Query 957 TACTTGTTGGAATGCT-ACGAGGTCACACAGAGTCTGTTCTATGCCTTGCGGTTGTGTCG 1015 || ||||||||||||| | |||||||||||||||||||||||||||| |||||||| ||| Sbjct 965 TAGTTGTTGGAATGCTTA-GAGGTCACACAGAGTCTGTTCTATGCCTCGCGGTTGTTTCG 1023 Query 1016 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGCTGTGGAAATGTTCAGGGACG 1075 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 1024 GACATACTTTGTAGTGGCTCAGCAGATAAGACAGTGAGGTTGTGGAAATGTTCAGCCAAG 1083 Query 1076 GATTATTCGTGCTTGGCTATGTTGGAGGGACATATAGGACCGGTTAAGTGCTTGACCGGG 1135 |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 1084 GATTATTCATGCTTGGCTATGTTAGAGGGACATTTAGGACCGGTTAAGTGCTTGACAGGG 1143 Query 1136 GCAATTCGTCATTC-CGGTAAACCATCTGAGGCTTCTTATCATATTTATAGTGGAGGACT 1194 ||| ||||| |||| || |||| || ||||||||||||||||||||||||||||||||| Sbjct 1144 GCATTTCGTGATTCGCG-TAAAGCAGATGAGGCTTCTTATCATATTTATAGTGGAGGACT 1202 Query 1195 TGACTCTCAAGTTAAGGTTTGGCAGATTTTGGTGCCGACCTAATAAAAGAGTTACTT 1251 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1203 AGACTCTCAAGTTAAGGTTTGGCAGGTTTTGGTGCCGGCCTAATAAAAGAGTTACTT 1259 > AT5G50111.1 | Symbols: | Pseudogene of AT5G50120; transducin family protein / WD-40 repeat family protein | chr5:20376311-20376942 REVERSE LENGTH=632 Length=632 Score = 427 bits (231), Expect = 1e-118 Identities = 523/655 (80%), Gaps = 56/655 (9%) Strand=Plus/Plus Query 155 GCCACTCTTGTAT-GTCACACAGCATCCTACATTTCATCTCTAACCCTTGCAGGAAAG-A 212 ||||||||||| | |||| | | |||||||||||||||||||||||||||| || | | Sbjct 4 GCCACTCTTGT-TGGTCATTTATCCTCCTACATTTCATCTCTAACCCTTGCAG-AATGGA 61 Query 213 GACTTTACACAGGCTCCAACGACGGAGTTGTT-AGATTATGGAATGCAAACACGTTGGAA 271 ||||||||||||||||||||||| ||||| || ||||| |||||||||| |||||| ||| Sbjct 62 GACTTTACACAGGCTCCAACGACAGAGTT-TTCAGATTGTGGAATGCAAGCACGTTTGAA 120 Query 272 ACATTAGCGGAAGCATCAAGCAACGGCGATGTAATAACAGGAGAGAG-AGGAGGCGGAG- 329 ||| || | |||| |||||||| ||||| |||||| |||||| || |||||| ||| Sbjct 121 ACACTATCAGAAGTATCAAGCAGTGGCGACATAATAAAAGGAGA-AGGAGGAGGAGGAAC 179 Query 330 -GA-GCAGTGAAATCTTTGGTAATACT-GGCTGATAAACTATTCACAGCACACCAAGATC 386 || ||||||||||||| |||||| || |||||| || || ||| |||| |||||||||| Sbjct 180 AGAAGCAGTGAAATCTTGGGTAAT-CTAGGCTGAGAAGCTCTTCCCAGCGCACCAAGATC 238 Query 387 ATAAGATACGTGTGTGGAAGATAAACGACGT--T-GTTGAAGAAGACGTGGGTGGTAAAA 443 | |||||| ||||||||||||| || ||||| | ||||||||| | | |||||||| || Sbjct 239 AAAAGATATGTGTGTGGAAGATCAATGACGTCGTCGTTGAAGAAAAAGCGGGTGGTATAA 298 Query 444 AGTACATGCATGTAGCGACGATGCCAACTATTAGCGATCGTTTTGCAAAGTGTTTGATGC 503 ||||||||||| | || | |||||||| ||||| || ||||| ||||||||||| |||| Sbjct 299 AGTACATGCATTTGGCTATGATGCCAAAGATTAGTGACCGTTTAGCAAAGTGTTTAATGC 358 Query 504 C--AAAGGACCAAGTTGAAATAAGGAGGCATAAGAAAGCTTCATGGGTTCACCATGTAGA 561 | ||| ||||||| || ||| ||||||| | ||||||||||||| Sbjct 359 CTTAAAA-ACCAAGT-------------CA-AAG---GCTTCATTG-TTCACCATGTAGA 399 Query 562 CGCGGTTTCGGGTTTAGCCTTATCAAGAGATGGAACGCTACTCTACTCTGTCTCATGGGA 621 ||||||||| |||| |||||||||||| |||||||| || ||||| ||||||||| | | Sbjct 400 CGCGGTTTCAGGTTAAGCCTTATCAAGTGATGGAACACTCCTCTATTCTGTCTCACAGAA 459 Query 622 CAGGACG--C----TT----AAAATCTGGCGTACTTCCGATTTTAAATGCCTAGAGTC-A 670 | ||| | | || ||||| | ||| ||| || |||||||||||||| |||| | Sbjct 460 CTGGATGTTCAAAATTGTTCAAAATATAGCGAACTACCCATTTTAAATGCCTATAGTCCA 519 Query 671 TTCACAAACGCCCATGATGATGCAATCAATGCGGTTGCATTATCCGAAAACGG-AGATAT 729 | ||||||| |||| ||||||| |||||||||||||| | ||||| || || | | Sbjct 520 T-CACAAACACCCACGATGATGTAATCAATGCGGTTGAAGTATCC-AATT-GGTA-AGC- 574 Query 730 ATACACAGGATCTTCTGACCAGAGAATCAAAGTATGGAGGAAAAACAT-CAATga 783 ||||| |||||||||||||||||||||||||||| ||||||||| || |||||| Sbjct 575 ATACATGGGATCTTCTGACCAGAGAATCAAAGTATCGAGGAAAAA-ATTCAATGA 628 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61495667625 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5