BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495070
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50130.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1694 0.0
> AT5G50130.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:20390015-20393263 FORWARD LENGTH=1281
Length=1281
Score = 1694 bits (917), Expect = 0.0
Identities = 1029/1084 (95%), Gaps = 3/1084 (0%)
Strand=Plus/Plus
Query 1 AGCTACAAAATCTTCTCATTCGATTATCTCTCTTTATTTCT-TCTCTAATGAAGGGAACT 59
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 4 AGCTACAAAATCTTCTCATTCGATTTTCTCTCTTTATTTCTCTCTCTAATGAAGGGAACT 63
Query 60 CTAAGATACTTAGCAGGAATAGCAGGGCCAAATGGGTTTGGCTCAAGATCCACAGCTGAA 119
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 64 CTAAGATACTTAGCAGGAATCGCTGGGCCAAATGGGTTTGGCTCAAGATCCACAGCTGAA 123
Query 120 CAAGTTACACAATATAGCTTTTTTCCTTGTTCAAATCTCACTGCCATAATCACTGGAGGA 179
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 124 CAAGTTACACAACATAGCTTTTTTCCTTGTTCACATCTCACTGCCATAATCACTGGAGGA 183
Query 180 ACGTCTGGGATCGGTGCGGAAACAGCGAGAGTCTTAGCAAAAAGAGGGGTGAGACTAGTG 239
||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 184 ACGTCTGGGATCGGTGCGGAAACTGCGAGAGTGTTAGCAAAAAGAGGGGTGAGAGTAGTG 243
Query 240 ATGGCAGTAAGAGATATGAAAAAAGCAGAAATGGTAAAGGAGAGAATATTGAGAGAGAAT 299
|||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||
Sbjct 244 ATGGCAGTAAGAGATATGAAGAAAGCAGAAATGGTGAAGGAGAGAATAATAAGAGAGAAT 303
Query 300 CCAGAAGCTGACATTAAATTGTTTGAGATTGATCTCAGCTCTCTCTCTTCCGTTGCAAGA 359
|||||||||||||||| ||| || ||||||||||| |||||||| ||||||||||| |||
Sbjct 304 CCAGAAGCTGACATTATATTATTCGAGATTGATCTGAGCTCTCTATCTTCCGTTGCCAGA 363
Query 360 TTCTGCTCTCAGTTTCTTTCCCAAGATCTTCCCCTCAACATTCTCATAAACAATGCAGGG 419
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 364 TTCTGCTCTCAATTTCTTTCCCAAGATCTTCCCCTCAACATACTCATAAACAACGCAGGA 423
Query 420 GTTTTCTCTCCAGATCTTGAATTTTCCGAAGAAAAGATTGAGCTGACATTTGCTACAAAC 479
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 424 GTTTTCTCTCCAAATCTTGAATTCTCCGAAGAAAAGATTGAGCTGACATTTGCTACAAAC 483
Query 480 TTTTTAGGACATTACTTATTAACAGAAATGCTGATAGAGAAAATGATAGACACCGCAGAG 539
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 484 TTTTTAGGACATTACTTATTAACAGAAATGCTGATAGAGAAAATGATAGATACGGCAGAG 543
Query 540 AAGAGTGGAATCGAAGGACGAATCATTAACCTTTCCTCAGTGATTCACAGTTGGGTCAAG 599
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 544 AAGAGTGGAATCGAAGGACGAATCATTAACCTTTCCTCTGTGATTCACAATTGGGTCAAG 603
Query 600 CCTGATTGTTTCTCCTTCCCTAAATTACTCCATCCCATTAGTAGGTATAACGGGACAAGG 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 604 CCTGATTGTTTCTCCTTCCCTAAATTGCTCCATCCCATTAGTAGGTATAACGGGACAAGG 663
Query 660 GCTTATGCTCACTCAAAGTTGGCCACAATTTTACATGCCAAAGCGTTGAGCAAGCAATTA 719
|| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 664 GCATATGCTCAGTCAAAGTTGGCTACAATTTTACATGCGAAAGCGTTGAGCAAGCAATTA 723
Query 720 AAGGACAGAAATGCAAATGTCACGATAAATGCGGTCCATCCAGGAATCGTTAAAACTGGA 779
|||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct 724 AAGGACAGGAATGCAAACGTGACGATAAATGCAGTCCATCCAGGAATTGTTAAAACTGGA 783
Query 780 ATTATCAGAGCACACAAGGGTCTTTTTACAGATTCTCTGTTTTTGATAGCTTCGAAGCTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ATTATCAGAGCACACAAGGGTCTTTTTACAGATTCTCTGTTTTTGATAGCTTCGAAGCTG 843
Query 840 CTAAAATCTATAAGCCAGGGCGCAGCTACAACATGTTATGTGGCATTGAGCAACGAAACC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CTAAAATCTATAAGCCAGGGCGCAGCTACAACATGTTATGTGGCATTGAGCAACGAAACC 903
Query 900 AAAGGGTTAAGTGGAAAGTATTTTGCAGACTGCAATGAGACCGAAA-GCTCAGATTTAGC 958
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 904 AAAGGGTTAAGTGGAAAGTATTTTGCAGACTGCAATGAGACC-AATTGCTCAGATTTAGC 962
Query 959 GAATGATGAGTCTGTGGCTTTCAAGCTATGCACCCACAGTCATGCCTTAATCCATGATTA 1018
||||||||||| ||||||| ||||||| |||||||| || | |||||||||||||||| |
Sbjct 963 GAATGATGAGTATGTGGCTCTCAAGCTCTGCACCCAAAGCCGTGCCTTAATCCATGATCA 1022
Query 1019 TTTGCATCAATCGCAAATACATTCCCTTCCTAATTTATGTCTTATGTAAATCATCTTAAT 1078
||||||| ||| ||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1023 TTTGCATGAATTTCAAATACATGCCCTTCCTAATTTATGTTTTTTGTAAATCATCTTAAT 1082
Query 1079 AATT 1082
||||
Sbjct 1083 AATT 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5